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pkgsrc/biology
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nia 4061210488 Switch packages using GLUT to FreeGLUT. 
Start building FreeGLUT with GLUT compatibility on.

- GLUT's maintainance state is much worse than FreeGLUT's, with no
  substanital commits since 2011.
- GLUT can no longer be consider a core component of Mesa or X11.
- Nobody except us seems to be using it...

Other vendors still shipping GLUT:
- GoboLinux, T2 SDE, PLD Linux

Revbump packages using GLUT or freeglut by default.
2019-08-30 17:01:32 +00:00
..
arka Add SHA512 digests for distfiles for biology category. 2015-11-02 18:42:20 +00:00
azara Switch packages using GLUT to FreeGLUT. 2019-08-30 17:01:32 +00:00
bcftools Bump PKGREVISIONs for perl 5.30.0 2019-08-11 13:17:48 +00:00
bioperl Bump PKGREVISIONs for perl 5.30.0 2019-08-11 13:17:48 +00:00
bodr Bump PKGREVISIONs for perl 5.30.0 2019-08-11 13:17:48 +00:00
bwa Bump PKGREVISIONs for perl 5.30.0 2019-08-11 13:17:48 +00:00
canu Recursive revbump from boost-1.71.0 2019-08-22 12:22:48 +00:00
cdhit Bump PKGREVISIONs for perl 5.30.0 2019-08-11 13:17:48 +00:00
chemical-mime-data chemical-mime-data: comment out dead sites 2017-12-24 09:42:12 +00:00
chemtool *: recursive bump for gdk-pixbuf2-2.38.1 2019-07-21 22:23:57 +00:00
clustalw Comment out some dead HOMEPAGEs. 2017-08-01 17:40:08 +00:00
coalesce Comment out some dead HOMEPAGEs. 2017-08-01 17:40:08 +00:00
fastDNAml Add SHA512 digests for distfiles for biology category. 2015-11-02 18:42:20 +00:00
fastp biology/fastp: import fastp-0.20.0 2019-05-04 16:15:25 +00:00
fluctuate Comment out some dead HOMEPAGEs. 2017-08-01 17:40:08 +00:00
gabedit *: recursive bump for gdk-pixbuf2-2.38.1 2019-07-21 22:23:57 +00:00
genesplicer Add SHA512 digests for distfiles for biology category. 2015-11-02 18:42:20 +00:00
glimmer Sort PLIST files. 2018-01-01 22:29:15 +00:00
gnome-chemistry-utils Bump PKGREVISIONs for perl 5.30.0 2019-08-11 13:17:48 +00:00
gp Add SHA512 digests for distfiles for biology category. 2015-11-02 18:42:20 +00:00
gromacs Bump PKGREVISIONs for perl 5.30.0 2019-08-11 13:17:48 +00:00
hisat2 Bump PKGREVISIONs for perl 5.30.0 2019-08-11 13:17:48 +00:00
hmmer Convert all occurrences (353 by my count) of 2017-01-19 18:52:01 +00:00
htslib Recursive revbump from boost-1.71.0 2019-08-22 12:22:48 +00:00
kallisto biology/kallisto: Switch from archivers/szip to archivers/libaec 2019-05-01 12:38:54 +00:00
lucy Add SHA512 digests for distfiles for biology category. 2015-11-02 18:42:20 +00:00
mopac Fix build. 2015-12-26 22:36:07 +00:00
mpqc Bump PKGREVISIONs for perl 5.30.0 2019-08-11 13:17:48 +00:00
mummer Bump PKGREVISIONs for perl 5.30.0 2019-08-11 13:17:48 +00:00
ncbi-blast+ Bump PKGREVISIONs for perl 5.30.0 2019-08-11 13:17:48 +00:00
nut Add SHA512 digests for distfiles for biology category. 2015-11-02 18:42:20 +00:00
openbabel *: recursive bump for gdk-pixbuf2-2.38.1 2019-07-21 22:23:57 +00:00
p5-Bio-ASN1-EntrezGene Bump PKGREVISIONs for perl 5.30.0 2019-08-11 13:17:48 +00:00
pdbalign Add SHA512 digests for distfiles for biology category. 2015-11-02 18:42:20 +00:00
phylip Add SHA512 digests for distfiles for biology category. 2015-11-02 18:42:20 +00:00
plink Multiple packages: Replace obsolete maintainer email 2019-01-13 22:06:42 +00:00
plinkseq Multiple packages: Replace obsolete maintainer email 2019-01-13 22:06:42 +00:00
primer3 Mark packages that require C++03 (or the GNU variants) if they fail with 2018-07-18 00:06:10 +00:00
profit Moved documentation to share/doc/${PKGBASE}. Bumped PKGREVISION. 2016-07-24 21:11:52 +00:00
puzzle Add SHA512 digests for distfiles for biology category. 2015-11-02 18:42:20 +00:00
py-biopython Add the biopython license to DEFAULT_ACCEPTABLE_LICENSES. 2019-08-14 18:12:00 +00:00
py-mol Switch packages using GLUT to FreeGLUT. 2019-08-30 17:01:32 +00:00
py-pydicom py-pydicom: Update to 1.2.1. 2018-12-05 10:09:09 +00:00
rasmol Add SHA512 digests for distfiles for biology category. 2015-11-02 18:42:20 +00:00
samtools Bump PKGREVISIONs for perl 5.30.0 2019-08-11 13:17:48 +00:00
sewer Sort PLIST files. 2018-01-01 22:29:15 +00:00
stacks Bump PKGREVISIONs for perl 5.30.0 2019-08-11 13:17:48 +00:00
stride Comment out dead sites. 2017-09-04 18:00:49 +00:00
trimmomatic biology/trimmomatic: import Trimmomatic-0.38 2018-07-25 15:14:32 +00:00
vsearch biology/vsearch: Upgrade to 2.13.4 2019-05-11 14:27:18 +00:00
xylem xylem: build fix 2018-09-29 12:49:55 +00:00
Makefile py-biopython: initial commit 2019-08-09 21:52:34 +00:00