6cf03299f0
A system for writing hierarchical statistical models largely compatible with 'BUGS' and 'JAGS', writing nimbleFunctions to operate models and do basic R-style math, and compiling both models and nimbleFunctions via custom- generated C++. 'NIMBLE' includes default methods for MCMC, particle filtering, Monte Carlo Expectation Maximization, and some other tools. The nimbleFunction system makes it easy to do things like implement new MCMC samplers from R, customize the assignment of samplers to different parts of a model from R, and compile the new samplers automatically via C++ alongside the samplers 'NIMBLE' provides. 'NIMBLE' extends the 'BUGS'/'JAGS' language by making it extensible: New distributions and functions can be added, including as calls to external compiled code. Although most people think of MCMC as the main goal of the 'BUGS'/'JAGS' language for writing models, one can use 'NIMBLE' for writing arbitrary other kinds of model-generic algorithms as well. A full User Manual is available at <https://r-nimble.org>.
445 lines
8.6 KiB
Makefile
445 lines
8.6 KiB
Makefile
# $NetBSD: Makefile,v 1.474 2020/08/07 02:59:26 brook Exp $
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COMMENT= Mathematics
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SUBDIR+= R
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SUBDIR+= R-CGIwithR
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SUBDIR+= R-DAAG
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SUBDIR+= R-DBI
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SUBDIR+= R-DEoptimR
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SUBDIR+= R-FNN
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SUBDIR+= R-Formula
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SUBDIR+= R-GRASS
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SUBDIR+= R-ISLR
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SUBDIR+= R-ISwR
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SUBDIR+= R-LearnBayes
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SUBDIR+= R-MatrixModels
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SUBDIR+= R-PHYLOGR
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SUBDIR+= R-R2HTML
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SUBDIR+= R-RArcInfo
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SUBDIR+= R-RColorBrewer
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SUBDIR+= R-RNetCDF
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SUBDIR+= R-RPostgreSQL
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SUBDIR+= R-RandomFields
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SUBDIR+= R-RandomFieldsUtils
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SUBDIR+= R-Rcmdr
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SUBDIR+= R-RcmdrMisc
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SUBDIR+= R-RcppArmadillo
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SUBDIR+= R-RcppEigen
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SUBDIR+= R-SparseM
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SUBDIR+= R-VGAM
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SUBDIR+= R-XML
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SUBDIR+= R-abind
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SUBDIR+= R-acepack
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SUBDIR+= R-akima
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SUBDIR+= R-aplpack
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SUBDIR+= R-backports
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SUBDIR+= R-bbmle
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SUBDIR+= R-bitops
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SUBDIR+= R-car
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SUBDIR+= R-carData
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SUBDIR+= R-chron
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SUBDIR+= R-circular
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SUBDIR+= R-classInt
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SUBDIR+= R-clim.pact
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SUBDIR+= R-coda
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SUBDIR+= R-combinat
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SUBDIR+= R-compositions
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SUBDIR+= R-date
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SUBDIR+= R-dplyr
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SUBDIR+= R-e1071
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SUBDIR+= R-ellipsis
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SUBDIR+= R-emdbook
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SUBDIR+= R-energy
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SUBDIR+= R-estimability
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SUBDIR+= R-forcats
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SUBDIR+= R-forecast
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SUBDIR+= R-fracdiff
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SUBDIR+= R-gdata
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SUBDIR+= R-generics
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SUBDIR+= R-genetics
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SUBDIR+= R-geoR
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SUBDIR+= R-geoRglm
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SUBDIR+= R-goftest
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SUBDIR+= R-gss
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SUBDIR+= R-gstat
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SUBDIR+= R-gtable
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SUBDIR+= R-gtools
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SUBDIR+= R-httpRequest
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SUBDIR+= R-hwde
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SUBDIR+= R-igraph
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SUBDIR+= R-intervals
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SUBDIR+= R-lme4
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SUBDIR+= R-lmm
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SUBDIR+= R-lmtest
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SUBDIR+= R-mapproj
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SUBDIR+= R-maps
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SUBDIR+= R-minqa
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SUBDIR+= R-mitools
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SUBDIR+= R-mnormt
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SUBDIR+= R-moonsun
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SUBDIR+= R-mvtnorm
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SUBDIR+= R-ncdf
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SUBDIR+= R-nloptr
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SUBDIR+= R-nimble
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SUBDIR+= R-nortest
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SUBDIR+= R-numDeriv
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SUBDIR+= R-pbkrtest
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SUBDIR+= R-pixmap
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SUBDIR+= R-plyr
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SUBDIR+= R-poweRlaw
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SUBDIR+= R-prettyunits
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SUBDIR+= R-prob
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SUBDIR+= R-psych
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SUBDIR+= R-quadprog
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SUBDIR+= R-quantreg
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SUBDIR+= R-randomForest
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SUBDIR+= R-relimp
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SUBDIR+= R-reshape2
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SUBDIR+= R-robustbase
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SUBDIR+= R-rstudioapi
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SUBDIR+= R-sandwich
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SUBDIR+= R-sgeostat
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SUBDIR+= R-shapefiles
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SUBDIR+= R-sp
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SUBDIR+= R-spacetime
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SUBDIR+= R-splancs
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SUBDIR+= R-stabledist
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SUBDIR+= R-statmod
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SUBDIR+= R-stringdist
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SUBDIR+= R-survey
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SUBDIR+= R-tensor
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SUBDIR+= R-tensorA
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SUBDIR+= R-tibble
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SUBDIR+= R-tidyr
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SUBDIR+= R-urca
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SUBDIR+= R-vctrs
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SUBDIR+= R-wle
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SUBDIR+= R-xtable
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SUBDIR+= R-xts
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SUBDIR+= R-zeallot
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SUBDIR+= R-zoo
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SUBDIR+= TinySVM
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SUBDIR+= aamath
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SUBDIR+= abs
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SUBDIR+= admesh
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SUBDIR+= algae
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SUBDIR+= amath
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SUBDIR+= analitza
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SUBDIR+= antixls
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SUBDIR+= aribas
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SUBDIR+= arpack-ng
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SUBDIR+= bc
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SUBDIR+= bc-gh
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SUBDIR+= bcal
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SUBDIR+= blas
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SUBDIR+= blitz++
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SUBDIR+= boolstuff
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SUBDIR+= calc
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SUBDIR+= calcoo
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SUBDIR+= cantor
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SUBDIR+= capc-calc
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SUBDIR+= cgal
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SUBDIR+= classias
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SUBDIR+= clisp-pari
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SUBDIR+= cln
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SUBDIR+= cloog
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SUBDIR+= coinmp
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SUBDIR+= congen
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SUBDIR+= crfsuite
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SUBDIR+= dcdflib.c
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SUBDIR+= dcdflib.f
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SUBDIR+= dfftpack
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SUBDIR+= dieharder
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SUBDIR+= djbfft
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SUBDIR+= djbsort
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SUBDIR+= double-conversion
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SUBDIR+= eigen2
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SUBDIR+= eigen3
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SUBDIR+= eispack
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SUBDIR+= ess
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SUBDIR+= eukleides
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SUBDIR+= eukleides10
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SUBDIR+= euler
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SUBDIR+= fftpack
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SUBDIR+= ffts
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SUBDIR+= fftw
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SUBDIR+= fftw2
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SUBDIR+= fftwf
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SUBDIR+= fgmp
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SUBDIR+= fityk
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SUBDIR+= fplll
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SUBDIR+= fricas
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SUBDIR+= galculator
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SUBDIR+= gap
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SUBDIR+= gappa
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SUBDIR+= gcalctool
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SUBDIR+= geg
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SUBDIR+= genius
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SUBDIR+= glpk
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SUBDIR+= gnome-calculator
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SUBDIR+= gnumeric112
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SUBDIR+= go-stats
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SUBDIR+= go-units
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SUBDIR+= gp-autpgrp
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SUBDIR+= gp-factint
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SUBDIR+= gp-fplsa
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SUBDIR+= gp-grape
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SUBDIR+= gp-grpconst
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SUBDIR+= gp-lag
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SUBDIR+= grace
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SUBDIR+= graphopt
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SUBDIR+= grpn
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SUBDIR+= gsl
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SUBDIR+= gtklife
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SUBDIR+= harmbase2
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SUBDIR+= harmgen
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SUBDIR+= harminv
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SUBDIR+= heirloom-factor
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SUBDIR+= heirloom-units
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SUBDIR+= herisvm
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SUBDIR+= hs-bifunctors
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SUBDIR+= hs-comonad
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SUBDIR+= hs-contravariant
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SUBDIR+= hs-distributive
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SUBDIR+= hs-ieee754
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SUBDIR+= hs-integer-logarithms
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SUBDIR+= hs-math-functions
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SUBDIR+= hs-mwc-random
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SUBDIR+= hs-nats
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SUBDIR+= hs-profunctors
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SUBDIR+= hs-scientific
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SUBDIR+= hs-semigroupoids
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SUBDIR+= hs-semigroups
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SUBDIR+= ipopt
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SUBDIR+= isl
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SUBDIR+= itpp
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SUBDIR+= kalgebra
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SUBDIR+= kcalc
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SUBDIR+= lapack
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SUBDIR+= libffm
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SUBDIR+= libint
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SUBDIR+= libixion
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SUBDIR+= liblbfgs
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SUBDIR+= liblinear
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SUBDIR+= libmatheval
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SUBDIR+= libnumbertext
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SUBDIR+= libshorttext
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SUBDIR+= libsvm
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SUBDIR+= linpack
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SUBDIR+= lp_solve
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SUBDIR+= ltm
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SUBDIR+= lua-cassowar
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SUBDIR+= lumina-calculator
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SUBDIR+= mapm
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SUBDIR+= mathomatic
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SUBDIR+= maxima
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SUBDIR+= mcsim
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SUBDIR+= meschach
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SUBDIR+= metis
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SUBDIR+= minisat
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SUBDIR+= minpack
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SUBDIR+= mpcomplex
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SUBDIR+= mpfi
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SUBDIR+= mpfr
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SUBDIR+= mprime-bin
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SUBDIR+= mtl
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SUBDIR+= muparser
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SUBDIR+= newmat
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SUBDIR+= nickle
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SUBDIR+= nlopt
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SUBDIR+= ntl
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SUBDIR+= ocaml-num
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SUBDIR+= ocaml-zarith
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SUBDIR+= octave
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SUBDIR+= odepack
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SUBDIR+= openaxiom
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SUBDIR+= openfst
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SUBDIR+= ordCalc
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SUBDIR+= otter
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SUBDIR+= p5-Algorithm-BloomFilter
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SUBDIR+= p5-Algorithm-Cluster
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SUBDIR+= p5-Algorithm-Munkres
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SUBDIR+= p5-Alien-GMP
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SUBDIR+= p5-Excel-Template
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SUBDIR+= p5-Excel-Template-Plus
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SUBDIR+= p5-Math-Base-Convert
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SUBDIR+= p5-Math-Base36
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SUBDIR+= p5-Math-Base85
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SUBDIR+= p5-Math-BaseCnv
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SUBDIR+= p5-Math-Bezier
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SUBDIR+= p5-Math-BigInt
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SUBDIR+= p5-Math-BigInt-GMP
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SUBDIR+= p5-Math-BigInt-Pari
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SUBDIR+= p5-Math-BigInteger
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SUBDIR+= p5-Math-Calc-Units
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SUBDIR+= p5-Math-Complex
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SUBDIR+= p5-Math-Derivative
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SUBDIR+= p5-Math-FFT
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SUBDIR+= p5-Math-GMP
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SUBDIR+= p5-Math-Int128
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SUBDIR+= p5-Math-Int64
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SUBDIR+= p5-Math-Interpolate
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SUBDIR+= p5-Math-Matrix
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SUBDIR+= p5-Math-MatrixReal
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SUBDIR+= p5-Math-Pari
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SUBDIR+= p5-Math-Permute-List
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SUBDIR+= p5-Math-Prime-Util
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SUBDIR+= p5-Math-Random
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SUBDIR+= p5-Math-Random-ISAAC
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SUBDIR+= p5-Math-Random-ISAAC-XS
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SUBDIR+= p5-Math-Random-MT
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SUBDIR+= p5-Math-Random-MT-Auto
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SUBDIR+= p5-Math-Random-MT-Perl
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SUBDIR+= p5-Math-Round
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SUBDIR+= p5-Math-Spline
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SUBDIR+= p5-Math-Systems
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SUBDIR+= p5-Math-Utils
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SUBDIR+= p5-Math-VecStat
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SUBDIR+= p5-Number-Compare
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SUBDIR+= p5-Number-Latin
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SUBDIR+= p5-Number-Range
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SUBDIR+= p5-Number-Tolerant
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SUBDIR+= p5-Number-WithError
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SUBDIR+= p5-Roman
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SUBDIR+= p5-Set-Crontab
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SUBDIR+= p5-Set-Infinite
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SUBDIR+= p5-Spreadsheet-ParseExcel
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SUBDIR+= p5-Spreadsheet-Read
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SUBDIR+= p5-Spreadsheet-ReadSXC
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SUBDIR+= p5-Spreadsheet-WriteExcel
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SUBDIR+= p5-Spreadsheet-XLSX
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SUBDIR+= p5-Statistics-CaseResampling
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SUBDIR+= p5-Statistics-Descriptive
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SUBDIR+= p5-Statistics-Distributions
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SUBDIR+= p5-Statistics-TTest
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SUBDIR+= p5-Test-Number-Delta
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SUBDIR+= pari
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SUBDIR+= pari-galdata
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SUBDIR+= pari23
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SUBDIR+= pcg
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SUBDIR+= pear-Math_BigInteger
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SUBDIR+= pear-Numbers_Roman
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SUBDIR+= pear-Numbers_Words
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SUBDIR+= php-bcmath
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SUBDIR+= php-stats
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SUBDIR+= ppl
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SUBDIR+= prng
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SUBDIR+= pspp
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SUBDIR+= py-Keras-Applications
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SUBDIR+= py-Keras-Preprocessing
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SUBDIR+= py-Numeric
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SUBDIR+= py-Scientific
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SUBDIR+= py-Scientific-doc
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SUBDIR+= py-Theano
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SUBDIR+= py-abcpmc
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SUBDIR+= py-almost
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SUBDIR+= py-arviz
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SUBDIR+= py-asteval
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SUBDIR+= py-autograd
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SUBDIR+= py-bottleneck
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SUBDIR+= py-cdecimal
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SUBDIR+= py-claripy
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SUBDIR+= py-ephem
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SUBDIR+= py-fftw
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SUBDIR+= py-fpconst
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SUBDIR+= py-gmpy
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SUBDIR+= py-infinity
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SUBDIR+= py-intervals
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SUBDIR+= py-kiwisolver
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SUBDIR+= py-libixion
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SUBDIR+= py-lmfit
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SUBDIR+= py-mpmath
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SUBDIR+= py-munkres
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SUBDIR+= py-netCDF4
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SUBDIR+= py-networkx
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SUBDIR+= py-noise
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SUBDIR+= py-numarray
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SUBDIR+= py-numba
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SUBDIR+= py-numexpr
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SUBDIR+= py-numpy
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SUBDIR+= py-numpy16
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SUBDIR+= py-pandas
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SUBDIR+= py-pandas-datareader
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SUBDIR+= py-patsy
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SUBDIR+= py-powerlaw
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SUBDIR+= py-pymc3
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SUBDIR+= py-pywavelets
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SUBDIR+= py-quadprog
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SUBDIR+= py-roman
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SUBDIR+= py-rpy
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SUBDIR+= py-scikit-image
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SUBDIR+= py-scikit-learn
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SUBDIR+= py-scipy
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SUBDIR+= py-scipy12
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SUBDIR+= py-simpleeval
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SUBDIR+= py-sklearn-pandas
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SUBDIR+= py-statsmodels
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SUBDIR+= py-sympy
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SUBDIR+= py-tables
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SUBDIR+= py-tensorboard
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SUBDIR+= py-uncertainties
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SUBDIR+= py-xarray
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SUBDIR+= py-z3
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SUBDIR+= py-z3solver
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SUBDIR+= qalculate
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SUBDIR+= qalculate-gtk
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SUBDIR+= qhull
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SUBDIR+= quadpack
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SUBDIR+= randlib
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SUBDIR+= ranger
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SUBDIR+= ruby-gsl
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SUBDIR+= ruby-narray
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SUBDIR+= ruby-roo
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SUBDIR+= ruby-spreadsheet
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SUBDIR+= sc
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SUBDIR+= sc-im
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SUBDIR+= scilab
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SUBDIR+= slatec
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SUBDIR+= snns
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SUBDIR+= sollya
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SUBDIR+= speedcrunch
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SUBDIR+= stan-math
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SUBDIR+= statist
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SUBDIR+= sundials
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SUBDIR+= superlu
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SUBDIR+= svmlin
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SUBDIR+= tasp-vsipl
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SUBDIR+= teapot
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SUBDIR+= tex-apnum
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SUBDIR+= tex-apnum-doc
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SUBDIR+= tex-fp
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SUBDIR+= tex-fp-doc
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SUBDIR+= tex-kastrup
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SUBDIR+= tex-kastrup-doc
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SUBDIR+= tex-mathpartir
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SUBDIR+= tex-mathpartir-doc
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SUBDIR+= tex-mathspec
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SUBDIR+= tex-mathspec-doc
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SUBDIR+= tex-minifp
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SUBDIR+= tex-minifp-doc
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SUBDIR+= tex-unicode-math
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SUBDIR+= tex-unicode-math-doc
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SUBDIR+= texdrive
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SUBDIR+= tochnog
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SUBDIR+= udunits
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SUBDIR+= units
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SUBDIR+= vista
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SUBDIR+= volk
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SUBDIR+= vowpal_wabbit
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SUBDIR+= wxmaxima
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SUBDIR+= xeukleides10
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SUBDIR+= xfractint
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SUBDIR+= xgap
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SUBDIR+= xldlas
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SUBDIR+= xlife
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SUBDIR+= xlispstat
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SUBDIR+= xmgr
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SUBDIR+= xyconvert
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SUBDIR+= xylib
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SUBDIR+= yacas
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SUBDIR+= yices2
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SUBDIR+= yorick
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SUBDIR+= z3
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.include "../mk/misc/category.mk"
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