kpriv/pkgsrc
1
0
Fork 0
Code Issues Pull requests Projects Releases Packages Wiki Activity
pkgsrc/biology
History
brook ee6eb88eaa py-biopython: initial commit 
The Biopython package contains high-quality, reusable modules and
scripts written in Python to make it as easy as possible to use Python
for bioinformatics.  The Biopython includes the follwing: the ability
to parse bioinformatics files into python utilizable data structures,
including support for the formats such as Blast output, Clustalw,
FASTA, GenBank, PubMed and Medicine, various Expasy files, SCOP,
Rebase, UniGene, and SwissProt.
2019-08-09 21:52:34 +00:00
..
arka Add SHA512 digests for distfiles for biology category. 2015-11-02 18:42:20 +00:00
azara Comment out some dead HOMEPAGEs. 2017-08-01 17:40:08 +00:00
bcftools PKGREVISION bump for anything using python without a PYPKGPREFIX. 2019-04-25 07:32:34 +00:00
bioperl Recursive bump for perl5-5.28.0 2018-08-22 09:42:51 +00:00
bodr Recursive bump for perl5-5.28.0 2018-08-22 09:42:51 +00:00
bwa Recursive bump for perl5-5.28.0 2018-08-22 09:42:51 +00:00
canu Recursive revbump from boost-1.70.0 2019-07-01 04:07:44 +00:00
cdhit Multiple packages: Replace obsolete maintainer email 2019-01-13 22:06:42 +00:00
chemical-mime-data chemical-mime-data: comment out dead sites 2017-12-24 09:42:12 +00:00
chemtool *: recursive bump for gdk-pixbuf2-2.38.1 2019-07-21 22:23:57 +00:00
clustalw Comment out some dead HOMEPAGEs. 2017-08-01 17:40:08 +00:00
coalesce Comment out some dead HOMEPAGEs. 2017-08-01 17:40:08 +00:00
fastDNAml Add SHA512 digests for distfiles for biology category. 2015-11-02 18:42:20 +00:00
fastp biology/fastp: import fastp-0.20.0 2019-05-04 16:15:25 +00:00
fluctuate Comment out some dead HOMEPAGEs. 2017-08-01 17:40:08 +00:00
gabedit *: recursive bump for gdk-pixbuf2-2.38.1 2019-07-21 22:23:57 +00:00
genesplicer Add SHA512 digests for distfiles for biology category. 2015-11-02 18:42:20 +00:00
glimmer Sort PLIST files. 2018-01-01 22:29:15 +00:00
gnome-chemistry-utils *: recursive bump for gdk-pixbuf2-2.38.1 2019-07-21 22:23:57 +00:00
gp Add SHA512 digests for distfiles for biology category. 2015-11-02 18:42:20 +00:00
gromacs Recursive bump for perl5-5.28.0 2018-08-22 09:42:51 +00:00
hisat2 PKGREVISION bump for anything using python without a PYPKGPREFIX. 2019-04-25 07:32:34 +00:00
hmmer Convert all occurrences (353 by my count) of 2017-01-19 18:52:01 +00:00
htslib *: recursive bump for nettle 3.5.1 2019-07-20 22:45:58 +00:00
kallisto biology/kallisto: Switch from archivers/szip to archivers/libaec 2019-05-01 12:38:54 +00:00
lucy Add SHA512 digests for distfiles for biology category. 2015-11-02 18:42:20 +00:00
mopac Fix build. 2015-12-26 22:36:07 +00:00
mpqc Recursive bump for perl5-5.28.0 2018-08-22 09:42:51 +00:00
mummer Recursive bump for perl5-5.28.0 2018-08-22 09:42:51 +00:00
ncbi-blast+ *: recursive bump for nettle 3.5.1 2019-07-20 22:45:58 +00:00
nut Add SHA512 digests for distfiles for biology category. 2015-11-02 18:42:20 +00:00
openbabel *: recursive bump for gdk-pixbuf2-2.38.1 2019-07-21 22:23:57 +00:00
p5-Bio-ASN1-EntrezGene Update packages using a search.cpan.org HOMEPAGE to metacpan.org. 2019-06-30 20:14:13 +00:00
pdbalign Add SHA512 digests for distfiles for biology category. 2015-11-02 18:42:20 +00:00
phylip Add SHA512 digests for distfiles for biology category. 2015-11-02 18:42:20 +00:00
plink Multiple packages: Replace obsolete maintainer email 2019-01-13 22:06:42 +00:00
plinkseq Multiple packages: Replace obsolete maintainer email 2019-01-13 22:06:42 +00:00
primer3 Mark packages that require C++03 (or the GNU variants) if they fail with 2018-07-18 00:06:10 +00:00
profit Moved documentation to share/doc/${PKGBASE}. Bumped PKGREVISION. 2016-07-24 21:11:52 +00:00
puzzle Add SHA512 digests for distfiles for biology category. 2015-11-02 18:42:20 +00:00
py-biopython py-biopython: initial commit 2019-08-09 21:52:34 +00:00
py-mol Revbump after updating graphics/glew 2019-05-29 19:52:48 +00:00
py-pydicom py-pydicom: Update to 1.2.1. 2018-12-05 10:09:09 +00:00
rasmol Add SHA512 digests for distfiles for biology category. 2015-11-02 18:42:20 +00:00
samtools PKGREVISION bump for anything using python without a PYPKGPREFIX. 2019-04-25 07:32:34 +00:00
sewer Sort PLIST files. 2018-01-01 22:29:15 +00:00
stacks PKGREVISION bump for anything using python without a PYPKGPREFIX. 2019-04-25 07:32:34 +00:00
stride Comment out dead sites. 2017-09-04 18:00:49 +00:00
trimmomatic biology/trimmomatic: import Trimmomatic-0.38 2018-07-25 15:14:32 +00:00
vsearch biology/vsearch: Upgrade to 2.13.4 2019-05-11 14:27:18 +00:00
xylem xylem: build fix 2018-09-29 12:49:55 +00:00
Makefile py-biopython: initial commit 2019-08-09 21:52:34 +00:00