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pkgsrc/biology
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rillig 9637f7852e all: migrate homepages from http to https 
pkglint -r --network --only "migrate"

As a side-effect of migrating the homepages, pkglint also fixed a few
indentations in unrelated lines. These and the new homepages have been
checked manually.
2020-01-26 17:30:40 +00:00
..
arka all: migrate homepages from http to https 2020-01-26 17:30:40 +00:00
azara Switch packages using GLUT to FreeGLUT. 2019-08-30 17:01:32 +00:00
bcftools all: migrate several HOMEPAGEs to https 2020-01-18 23:30:05 +00:00
bioperl biology: align variable assignments 2019-11-02 22:09:00 +00:00
bodr Bump PKGREVISIONs for perl 5.30.0 2019-08-11 13:17:48 +00:00
bwa all: migrate some SourceForge homepage URLs back from https to http 2020-01-26 05:26:08 +00:00
canu *: Recursive revbump from devel/boost-libs 2020-01-12 20:19:52 +00:00
cdhit Bump PKGREVISIONs for perl 5.30.0 2019-08-11 13:17:48 +00:00
chemical-mime-data chemical-mime-data: comment out dead sites 2017-12-24 09:42:12 +00:00
chemtool chemtool: Mark as PaX mprotect unsafe to prevent segfault 2020-01-11 04:04:41 +00:00
clustalw Comment out some dead HOMEPAGEs. 2017-08-01 17:40:08 +00:00
coalesce Comment out some dead HOMEPAGEs. 2017-08-01 17:40:08 +00:00
fastDNAml Add SHA512 digests for distfiles for biology category. 2015-11-02 18:42:20 +00:00
fastp biology/fastp: import fastp-0.20.0 2019-05-04 16:15:25 +00:00
fluctuate Comment out some dead HOMEPAGEs. 2017-08-01 17:40:08 +00:00
gabedit all: migrate some SourceForge homepage URLs back from https to http 2020-01-26 05:26:08 +00:00
genesplicer Add SHA512 digests for distfiles for biology category. 2015-11-02 18:42:20 +00:00
glimmer Sort PLIST files. 2018-01-01 22:29:15 +00:00
gnome-chemistry-utils all: migrate several HOMEPAGEs to https 2020-01-18 23:30:05 +00:00
gp all: migrate homepages from http to https 2020-01-26 17:30:40 +00:00
gromacs biology: align variable assignments 2019-11-02 22:09:00 +00:00
hisat2 Bump PKGREVISIONs for perl 5.30.0 2019-08-11 13:17:48 +00:00
hmmer Convert all occurrences (353 by my count) of 2017-01-19 18:52:01 +00:00
htslib all: migrate homepages from http to https 2020-01-26 17:30:40 +00:00
kallisto biology/kallisto: Switch from archivers/szip to archivers/libaec 2019-05-01 12:38:54 +00:00
lucy all: migrate some SourceForge homepage URLs back from https to http 2020-01-26 05:26:08 +00:00
mopac Fix build. 2015-12-26 22:36:07 +00:00
mpqc biology: align variable assignments 2019-11-02 22:09:00 +00:00
mummer all: migrate some SourceForge homepage URLs back from https to http 2020-01-26 05:26:08 +00:00
ncbi-blast+ biology: align variable assignments 2019-11-02 22:09:00 +00:00
nut all: migrate some SourceForge homepage URLs back from https to http 2020-01-26 05:26:08 +00:00
openbabel openbabel: Fix pkg-config .pc file 2019-11-20 18:07:55 +00:00
p5-Bio-ASN1-EntrezGene Bump PKGREVISIONs for perl 5.30.0 2019-08-11 13:17:48 +00:00
pdbalign Add SHA512 digests for distfiles for biology category. 2015-11-02 18:42:20 +00:00
phylip biology: align variable assignments 2019-11-02 22:09:00 +00:00
plink Multiple packages: Replace obsolete maintainer email 2019-01-13 22:06:42 +00:00
plinkseq Multiple packages: Replace obsolete maintainer email 2019-01-13 22:06:42 +00:00
primer3 all: migrate several HOMEPAGEs to https 2020-01-18 23:30:05 +00:00
profit Moved documentation to share/doc/${PKGBASE}. Bumped PKGREVISION. 2016-07-24 21:11:52 +00:00
puzzle biology: align variable assignments 2019-11-02 22:09:00 +00:00
py-biopython all: migrate homepages from http to https 2020-01-26 17:30:40 +00:00
py-mol Changed PYTHON_VERSIONS_INCOMPATIBLE to PYTHON_VERSIONS_ACCEPTED; needed for future Python 3.8 2019-09-02 13:19:35 +00:00
py-pydicom py-pydicom: Update to 1.3.0 2019-10-01 14:45:29 +00:00
rasmol Add SHA512 digests for distfiles for biology category. 2015-11-02 18:42:20 +00:00
samtools all: migrate homepages from http to https 2020-01-26 17:30:40 +00:00
sewer Sort PLIST files. 2018-01-01 22:29:15 +00:00
stacks Bump PKGREVISIONs for perl 5.30.0 2019-08-11 13:17:48 +00:00
stride Comment out dead sites. 2017-09-04 18:00:49 +00:00
trimmomatic biology/trimmomatic: import Trimmomatic-0.38 2018-07-25 15:14:32 +00:00
vsearch biology/vsearch: Upgrade to 2.13.4 2019-05-11 14:27:18 +00:00
xylem all: migrate homepages from http to https 2020-01-26 17:30:40 +00:00
Makefile py-biopython: initial commit 2019-08-09 21:52:34 +00:00