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ad2vcf
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biology/ad2vcf: Fix typo in DESCR
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2023-06-22 11:26:26 +00:00 |
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arka
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biology: Replace RMD160 checksums with BLAKE2s checksums
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2021-10-26 10:03:36 +00:00 |
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atac-seq
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*: restrict py-numpy users to 3.9+ in preparation for update
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2023-07-01 08:37:33 +00:00 |
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azara
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Bump all dependent packages of wayland (belatedly)
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2022-08-11 05:08:00 +00:00 |
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balance-tui
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biology/balance-tui: update to 0.1.2
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2023-06-06 19:25:14 +00:00 |
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bcftools
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biology/bcftools: Update to 1.17
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2023-02-25 13:56:33 +00:00 |
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beagle
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biology: Replace RMD160 checksums with BLAKE2s checksums
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2021-10-26 10:03:36 +00:00 |
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bedtools
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bedtools: SunOS needs libsocket.
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2023-06-26 17:21:15 +00:00 |
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biolibc
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biology/biolibc: Update to 0.2.4.3
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2023-06-14 18:41:24 +00:00 |
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biolibc-tools
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biology/biolibc-tools: Update to 0.1.4.6
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2023-06-14 18:43:33 +00:00 |
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bioperl
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*: recursive bump for perl 5.38
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2023-07-06 09:38:07 +00:00 |
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bodr
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revbump after textproc/icu update
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2023-04-19 08:08:03 +00:00 |
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bowtie2
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biology/bowtie2: Add support for aarch64 via devel/simde
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2023-05-18 14:16:27 +00:00 |
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bwa
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biology/bwa: Add support for aarch64 via devel/simde
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2023-05-18 14:05:15 +00:00 |
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canu
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*: recursive bump for perl 5.38
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2023-07-06 09:38:07 +00:00 |
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cdhit
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*: recursive bump for perl 5.36
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2022-06-28 11:30:51 +00:00 |
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chemical-mime-data
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Mass-change BUILD_DEPENDS to TOOL_DEPENDS outside mk/.
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2023-06-06 12:40:15 +00:00 |
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chemtool
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*: Recursive revbup from graphics/freetype2
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2023-01-29 21:14:22 +00:00 |
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chip-seq
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*: restrict py-numpy users to 3.9+ in preparation for update
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2023-07-01 08:37:33 +00:00 |
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clustalw
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biology: Replace RMD160 checksums with BLAKE2s checksums
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2021-10-26 10:03:36 +00:00 |
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coalesce
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biology: Replace RMD160 checksums with BLAKE2s checksums
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2021-10-26 10:03:36 +00:00 |
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coordgenlibs
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revbump for boost
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2023-04-23 14:26:05 +00:00 |
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fasda
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biology/fasda: Update to 0.1.3
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2023-06-14 18:45:12 +00:00 |
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fastDNAml
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biology: Replace RMD160 checksums with BLAKE2s checksums
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2021-10-26 10:03:36 +00:00 |
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fastp
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biology/fastp: Update to 0.22.0
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2023-06-01 13:03:53 +00:00 |
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fastq-trim
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Change MAINTAINER= to OWNER= on mission-critical packages
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2022-12-28 15:27:15 +00:00 |
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fastqc
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*: recursive bump for perl 5.36
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2022-06-28 11:30:51 +00:00 |
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fastx-toolkit
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*: recursive bump for perl 5.36
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2022-06-28 11:30:51 +00:00 |
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filter-fastq
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*: Revbump packages that use Python at runtime without a PKGNAME prefix
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2022-06-30 11:18:01 +00:00 |
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fluctuate
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biology: Replace RMD160 checksums with BLAKE2s checksums
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2021-10-26 10:03:36 +00:00 |
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gabedit
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*: Recursive revbup from graphics/freetype2
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2023-01-29 21:14:22 +00:00 |
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generand
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Change MAINTAINER= to OWNER= on mission-critical packages
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2022-12-28 15:27:15 +00:00 |
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genesplicer
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biology: Replace RMD160 checksums with BLAKE2s checksums
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2021-10-26 10:03:36 +00:00 |
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gffread
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biology/gffread: GFF/GTF format conversions, filtering, etc
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2022-11-06 23:01:17 +00:00 |
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glimmer
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biology: Replace RMD160 checksums with BLAKE2s checksums
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2021-10-26 10:03:36 +00:00 |
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gnome-chemistry-utils
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revbump after textproc/icu update
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2023-04-19 08:08:03 +00:00 |
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gp
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biology: Replace RMD160 checksums with BLAKE2s checksums
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2021-10-26 10:03:36 +00:00 |
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gromacs
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revbump after textproc/icu update
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2023-04-19 08:08:03 +00:00 |
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hisat2
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biology/hisat2: Add SIMDE support
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2023-05-17 21:55:34 +00:00 |
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hmmer
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biology: Replace RMD160 checksums with BLAKE2s checksums
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2021-10-26 10:03:36 +00:00 |
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htslib
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revbump after textproc/icu update
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2023-04-19 08:08:03 +00:00 |
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igv
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biology: Replace RMD160 checksums with BLAKE2s checksums
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2021-10-26 10:03:36 +00:00 |
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kallisto
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Change MAINTAINER= to OWNER= on mission-critical packages
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2022-12-28 15:27:15 +00:00 |
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lucy
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biology: Replace RMD160 checksums with BLAKE2s checksums
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2021-10-26 10:03:36 +00:00 |
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maeparser
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revbump for boost
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2023-04-23 14:26:05 +00:00 |
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miniasm
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miniasm: Honour LDFLAGS. Hopefully fixes build on platforms where zlib
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2023-07-09 08:31:06 +00:00 |
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minimap2
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minimap2: Honour CFLAGS/LDFLAGS. Hopefully fixes build on platforms
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2023-07-09 08:37:39 +00:00 |
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molsketch
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biology: Where possible, adjust packages to use USE_(CC|CXX)_FEATURES
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2023-07-18 12:57:52 +00:00 |
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mopac
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*: restrict py-numpy users to 3.9+ in preparation for update
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2023-07-01 08:37:33 +00:00 |
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mpqc
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*: recursive bump for perl 5.36
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2022-06-28 11:30:51 +00:00 |
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mummer
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*: recursive bump for perl 5.36
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2022-06-28 11:30:51 +00:00 |
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ncbi-blast+
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biology: Where possible, adjust packages to use USE_(CC|CXX)_FEATURES
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2023-07-18 12:57:52 +00:00 |
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nut
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biology: Replace RMD160 checksums with BLAKE2s checksums
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2021-10-26 10:03:36 +00:00 |
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openbabel
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openbabel: switch to wxGTK32
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2023-06-07 09:25:22 +00:00 |
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p5-Bio-ASN1-EntrezGene
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*: recursive bump for perl 5.38
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2023-07-06 09:38:07 +00:00 |
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pdbalign
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biology: Replace RMD160 checksums with BLAKE2s checksums
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2021-10-26 10:03:36 +00:00 |
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peak-classifier
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biology/peak-classifier: Update to 0.1.4.8
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2023-06-14 18:48:54 +00:00 |
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phylip
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biology: Replace RMD160 checksums with BLAKE2s checksums
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2021-10-26 10:03:36 +00:00 |
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plink
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biology: Replace RMD160 checksums with BLAKE2s checksums
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2021-10-26 10:03:36 +00:00 |
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plinkseq
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revbump for devel/protobuf
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2022-04-03 18:50:16 +00:00 |
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primer3
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biology: Replace RMD160 checksums with BLAKE2s checksums
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2021-10-26 10:03:36 +00:00 |
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profit
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biology: Replace RMD160 checksums with BLAKE2s checksums
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2021-10-26 10:03:36 +00:00 |
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puzzle
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biology: Replace RMD160 checksums with BLAKE2s checksums
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2021-10-26 10:03:36 +00:00 |
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py-biopython
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*: restrict py-numpy users to 3.9+ in preparation for update
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2023-07-01 08:37:33 +00:00 |
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py-cutadapt
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py-cutadapt: fix build with python 3.11
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2022-11-16 23:02:14 +00:00 |
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py-dnaio
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py-dnaio: update to 0.9.1.
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2022-11-14 10:39:40 +00:00 |
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py-macs2
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*: restrict py-numpy users to 3.9+ in preparation for update
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2023-07-01 08:37:33 +00:00 |
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py-pydicom
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py-pydicom: updated to 2.3.1
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2022-11-15 10:15:54 +00:00 |
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R-popbio
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biology: Replace RMD160 checksums with BLAKE2s checksums
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2021-10-26 10:03:36 +00:00 |
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racon
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*: remove pkg-config from tools where no buildlink3.mk file is included
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2022-07-25 11:12:18 +00:00 |
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rasmol
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*: Remove many GCC_REQD for particularly old GCCs
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2023-07-17 22:00:22 +00:00 |
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rna-seq
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biology/rna-seq: Add www/webbrowser dep to metapackage
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2023-01-23 21:41:53 +00:00 |
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samtools
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biology/samtools: Update to 1.17
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2023-02-25 13:52:39 +00:00 |
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seqtk
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seqtk: Add missing zlib dependency
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2023-07-09 08:41:40 +00:00 |
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sewer
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biology: Replace RMD160 checksums with BLAKE2s checksums
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2021-10-26 10:03:36 +00:00 |
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stacks
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*: Revbump packages that use Python at runtime without a PKGNAME prefix
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2022-06-30 11:18:01 +00:00 |
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stride
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biology: Replace RMD160 checksums with BLAKE2s checksums
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2021-10-26 10:03:36 +00:00 |
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trimmomatic
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biology: Replace RMD160 checksums with BLAKE2s checksums
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2021-10-26 10:03:36 +00:00 |
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vcf-split
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Change MAINTAINER= to OWNER= on mission-critical packages
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2022-12-28 15:27:15 +00:00 |
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vcf2hap
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Change MAINTAINER= to OWNER= on mission-critical packages
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2022-12-28 15:27:15 +00:00 |
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vsearch
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biology/vsearch: Update to 2.23.0
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2023-07-09 16:20:58 +00:00 |
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xmakemol
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biology/xmakemol: import package from wip.
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2022-12-30 18:17:48 +00:00 |
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xylem
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biology: Replace RMD160 checksums with BLAKE2s checksums
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2021-10-26 10:03:36 +00:00 |
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Makefile
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biology/Makefile: Add chip-seq
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2023-06-14 21:28:54 +00:00 |
