pkgsrc/biology
minskim 15e9128d89 Update hmmer to 2.3.2. Patch provided by David Price in PR pkg/28483.
While here, enable pkgviews installation.

Changes:
-:- hmmsearch intermittently failed on Swissprot searches, on some
    platforms (reports on AMD/Linux; Mac OS/X). (#h25)
-:- hmmpfam memory allocation strategy did not guarantee RAMLIMIT,
    and could explode to very large allocations when searching
    with large sequences. (#h26)
-:- technical improvements in handing dsq's (digitized sequences);
    "bug" has no visible effects, except when compiling on
    different platforms. (#h27)
-:- typo fix in P7Forward() recursion; typo may have had minor
    effect on calculated scores. (#h28)
-:- hmmalign now includes --outformat and --oneline option for
    specifying different output alignment formats than the default
    Stockholm.
2004-12-01 04:01:09 +00:00
..
bioperl Convert to buildlink3. 2004-04-11 03:50:56 +00:00
chemtool Libtool fix for PR pkg/26633, and other issues. Update libtool to 1.5.10 2004-10-03 00:12:51 +00:00
clustalw Update to clustalw 1.83. Changes since 1.8 include: 2004-08-16 23:34:58 +00:00
coalesce Convert to buildlink3. 2004-04-11 03:50:56 +00:00
fastDNAml Update fastDNAml to version 1.2.2. Notable changes include: 2004-08-16 23:45:59 +00:00
fluctuate Convert to buildlink3. 2004-04-11 03:50:56 +00:00
genesplicer Convert to buildlink3. 2004-04-11 03:50:56 +00:00
glimmer Update to glimmer-2.13, thanks to cngo@nmsu.edu. 2004-08-19 16:47:01 +00:00
gp Modify patch-aa to replace -e tests with -d tests, so install will work 2004-08-23 14:41:06 +00:00
hmmer Update hmmer to 2.3.2. Patch provided by David Price in PR pkg/28483. 2004-12-01 04:01:09 +00:00
mummer Convert to buildlink3. 2004-04-11 04:07:05 +00:00
nut Update to 10.2: 2004-08-18 11:22:36 +00:00
pdbalign Move WRKSRC definition away from the first paragraph in a Makefile. 2004-01-20 12:07:06 +00:00
phylip Update phylip to version 3.61. No ChangeLog included. However there is a 2004-08-16 23:58:35 +00:00
profit Add DIST_SUBDIR because contents changed while archive filename did not. 2004-08-17 02:48:04 +00:00
puzzle Add trailing / on HOMEPAGEs 2003-12-30 17:21:54 +00:00
rasmol Convert to buildlink3. 2004-04-11 04:07:05 +00:00
sewer Do not install files not specified in PLIST. 2004-02-18 21:13:48 +00:00
stride Update HOMEPAGE, addresses PR#26667 from Georg Schwarz. 2004-08-15 13:37:24 +00:00
xylem Convert to buildlink3. 2004-04-11 04:07:05 +00:00
Makefile Add/enable xylem 2003-10-04 19:16:29 +00:00