3
5
Fork 0
mirror of git://git.savannah.gnu.org/guix.git synced 2023-12-14 03:33:07 +01:00
Commit graph

1883 commits

Author SHA1 Message Date
Ricardo Wurmus
c935b25a9e
gnu: r-biocpkgtools: Update to 1.10.2.
* gnu/packages/bioconductor.scm (r-biocpkgtools): Update to 1.10.2.
[propagated-inputs]: Remove r-rex.
2021-09-30 12:39:49 +02:00
Ricardo Wurmus
3683f7f0a8
gnu: r-timeseriesexperiment: Update to 1.10.1.
* gnu/packages/bioconductor.scm (r-timeseriesexperiment): Update to 1.10.1.
2021-09-30 12:39:48 +02:00
Ricardo Wurmus
74e2186731
gnu: r-gdsfmt: Update to 1.28.1.
* gnu/packages/bioconductor.scm (r-gdsfmt): Update to 1.28.1.
2021-09-30 12:39:48 +02:00
Ricardo Wurmus
494b7c4eca
gnu: r-cicero: Update to 1.10.1.
* gnu/packages/bioconductor.scm (r-cicero): Update to 1.10.1.
2021-09-30 12:39:48 +02:00
Ricardo Wurmus
3278daa726
gnu: r-zinbwave: Update to 1.14.2.
* gnu/packages/bioconductor.scm (r-zinbwave): Update to 1.14.2.
2021-09-30 12:39:48 +02:00
Ricardo Wurmus
a88e7abf2f
gnu: r-clusterprofiler: Update to 4.0.5.
* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 4.0.5.
[propagated-inputs]: Remove r-rvcheck; add r-yulab-utils.
2021-09-30 12:39:48 +02:00
Ricardo Wurmus
1359fc7fbd
gnu: r-ggtree: Update to 3.0.4.
* gnu/packages/bioconductor.scm (r-ggtree): Update to 3.0.4.
[propagated-inputs]: Remove r-rvcheck; add r-ggfun and r-yulab-utils.
2021-09-30 12:39:48 +02:00
Ricardo Wurmus
538618552b
gnu: r-matrixgenerics: Update to 1.4.3.
* gnu/packages/bioconductor.scm (r-matrixgenerics): Update to 1.4.3.
2021-09-30 12:39:48 +02:00
Ricardo Wurmus
ce23a074f0
gnu: r-chippeakanno: Update to 3.26.4.
* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.26.4.
2021-09-30 12:39:48 +02:00
Ricardo Wurmus
4fb187b79e
gnu: r-diffbind: Update to 3.2.7.
* gnu/packages/bioconductor.scm (r-diffbind): Update to 3.2.7.
2021-09-30 12:39:47 +02:00
Ricardo Wurmus
43ac163bdf
gnu: r-genomicfeatures: Update to 1.44.2.
* gnu/packages/bioconductor.scm (r-genomicfeatures): Update to 1.44.2.
2021-09-30 12:39:47 +02:00
Ricardo Wurmus
7c6046a6db
gnu: r-genomeinfodb: Update to 1.28.4.
* gnu/packages/bioconductor.scm (r-genomeinfodb): Update to 1.28.4.
2021-09-30 12:39:47 +02:00
Ricardo Wurmus
0ac7b8b6ad
gnu: r-edger: Update to 3.34.1.
* gnu/packages/bioconductor.scm (r-edger): Update to 3.34.1.
2021-09-30 12:39:47 +02:00
Ricardo Wurmus
77a5fdd51c
gnu: r-biocparallel: Update to 1.26.2.
* gnu/packages/bioconductor.scm (r-biocparallel): Update to 1.26.2.
2021-09-30 12:39:47 +02:00
Ricardo Wurmus
e8aab58d0c
gnu: r-affxparser: Update to 1.64.1.
* gnu/packages/bioconductor.scm (r-affxparser): Update to 1.64.1.
2021-09-30 12:39:47 +02:00
Tobias Geerinckx-Rice
708fe49523
gnu: r-simplifyenrichment: Fix typo in description.
* gnu/packages/bioconductor.scm (r-simplifyenrichment)[description]:
Fix ‘implemeted’ typo.
2021-09-28 22:00:48 +02:00
Ricardo Wurmus
ca962b5ba9
gnu: Add r-omnipathr.
* gnu/packages/bioconductor.scm (r-omnipathr): New variable.
2021-09-23 14:46:49 +02:00
zimoun
8e54aafa39
gnu: Add r-simplifyenrichment.
* gnu/packages/bioconductor.scm (r-simplifyenrichment): New variable.
2021-09-20 17:23:15 +02:00
Ricardo Wurmus
5cfe5ddece
gnu: Add r-biscuiteer.
* gnu/packages/bioconductor.scm (r-biscuiteer): New variable.
2021-09-07 14:47:57 +02:00
Ricardo Wurmus
f051f68ca2
gnu: Add r-dmrseq.
* gnu/packages/bioconductor.scm (r-dmrseq): New variable.
2021-09-07 14:47:57 +02:00
Ricardo Wurmus
0d1990b986
gnu: Add r-bsseq.
* gnu/packages/bioconductor.scm (r-bsseq): New variable.
2021-09-07 14:47:57 +02:00
Ricardo Wurmus
b63fb6a2e6
gnu: Add r-biotmle.
* gnu/packages/bioconductor.scm (r-biotmle): New variable.
2021-09-07 14:47:57 +02:00
Ricardo Wurmus
ccc1b9e5a1
gnu: Add r-biotip.
* gnu/packages/bioconductor.scm (r-biotip): New variable.
2021-09-07 14:47:57 +02:00
Ricardo Wurmus
32d8a7d3ba
gnu: Add r-bioqc.
* gnu/packages/bioconductor.scm (r-bioqc): New variable.
2021-09-07 14:47:56 +02:00
Ricardo Wurmus
d5f792ac10
gnu: Add r-bionetstat.
* gnu/packages/bioconductor.scm (r-bionetstat): New variable.
2021-09-07 14:47:56 +02:00
Ricardo Wurmus
35526b62a8
gnu: Add r-bionet.
* gnu/packages/bioconductor.scm (r-bionet): New variable.
2021-09-07 14:47:56 +02:00
Ricardo Wurmus
4f6b3821eb
gnu: Add r-bionero.
* gnu/packages/bioconductor.scm (r-bionero): New variable.
2021-09-07 14:47:56 +02:00
Ricardo Wurmus
2794024dc2
gnu: Add r-biomvrcns.
* gnu/packages/bioconductor.scm (r-biomvrcns): New variable.
2021-09-07 14:47:56 +02:00
Ricardo Wurmus
9cb08ead85
gnu: Add r-biomvcclass.
* gnu/packages/bioconductor.scm (r-biomvcclass): New variable.
2021-09-07 14:47:56 +02:00
Ricardo Wurmus
e10a3bc0ca
gnu: Add r-mvcclass.
* gnu/packages/bioconductor.scm (r-mvcclass): New variable.
2021-09-07 14:47:56 +02:00
Ricardo Wurmus
0780bcc0c0
gnu: Add r-biscuiteerdata.
* gnu/packages/bioconductor.scm (r-biscuiteerdata): New variable.
2021-09-07 14:47:56 +02:00
Ricardo Wurmus
bcbd8b7921
gnu: Add r-mus-musculus.
* gnu/packages/bioconductor.scm (r-mus-musculus): New variable.
2021-09-07 14:47:56 +02:00
Ricardo Wurmus
aed1504837
gnu: Add r-biomformat.
* gnu/packages/bioconductor.scm (r-biomformat): New variable.
2021-09-07 12:16:47 +02:00
Ricardo Wurmus
48e300bd3f
gnu: Add r-biodb.
* gnu/packages/bioconductor.scm (r-biodb): New variable.
2021-09-07 12:16:41 +02:00
Ricardo Wurmus
2c8e3595e3
gnu: Add r-biocdockermanager.
* gnu/packages/bioconductor.scm (r-biocdockermanager): New variable.
2021-09-07 12:16:33 +02:00
Ricardo Wurmus
7ca0a0f0e7
gnu: Add r-biocthis.
* gnu/packages/bioconductor.scm (r-biocthis): New variable.
2021-09-07 12:08:17 +02:00
Ricardo Wurmus
fd5372e40f
gnu: Add r-basilisk.
* gnu/packages/bioconductor.scm (r-basilisk): New variable.
2021-09-07 12:08:13 +02:00
Ricardo Wurmus
dde984ca19
gnu: Add r-basilisk-utils.
* gnu/packages/bioconductor.scm (r-basilisk-utils): New variable.
2021-09-07 12:08:06 +02:00
Ricardo Wurmus
c9d545ab01
gnu: Add r-dir-expiry.
* gnu/packages/bioconductor.scm (r-dir-expiry): New variable.
2021-09-07 12:07:59 +02:00
Ricardo Wurmus
b76b47ebe4
gnu: Add r-genetclassifier.
* gnu/packages/bioconductor.scm (r-genetclassifier): New variable.
2021-09-07 12:01:25 +02:00
Ricardo Wurmus
e43c6d2e4a
gnu: Add r-minet.
* gnu/packages/bioconductor.scm (r-minet): New variable.
2021-09-07 12:01:16 +02:00
Ricardo Wurmus
5143f3852d
gnu: Add r-biobtreer.
* gnu/packages/bioconductor.scm (r-biobtreer): New variable.
2021-09-07 12:01:10 +02:00
Ricardo Wurmus
a59aee1330
gnu: Add r-bgeedb.
* gnu/packages/bioconductor.scm (r-bgeedb): New variable.
2021-09-07 12:01:03 +02:00
Ricardo Wurmus
26da032d5b
gnu: Add r-org-bt-eg-db.
* gnu/packages/bioconductor.scm (r-org-bt-eg-db): New variable.
2021-09-07 12:00:53 +02:00
Ricardo Wurmus
af81591375
gnu: Add r-bgeecall.
* gnu/packages/bioconductor.scm (r-bgeecall): New variable.
2021-09-07 11:44:33 +02:00
Ricardo Wurmus
62381dce86
gnu: Add r-beclear.
* gnu/packages/bioconductor.scm (r-beclear): New variable.
2021-09-07 11:44:33 +02:00
Ricardo Wurmus
816d52ba93
gnu: Add r-megadepth.
* gnu/packages/bioconductor.scm (r-megadepth): New variable.
2021-09-06 14:48:24 +02:00
Ricardo Wurmus
2f16659b40
gnu: Add r-ballgown.
* gnu/packages/bioconductor.scm (r-ballgown): New variable.
2021-08-25 12:30:33 +02:00
Ricardo Wurmus
68b22a8541
gnu: r-delayedmatrixstats: Update to 1.14.2.
* gnu/packages/bioconductor.scm (r-delayedmatrixstats): Update to 1.14.2.
2021-08-24 12:28:13 +02:00
Ricardo Wurmus
26d6db11f0
gnu: r-sparsematrixstats: Update to 1.4.2.
* gnu/packages/bioconductor.scm (r-sparsematrixstats): Update to 1.4.2.
2021-08-24 12:28:13 +02:00
Ricardo Wurmus
b2316605e2
gnu: r-scuttle: Update to 1.2.1.
* gnu/packages/bioconductor.scm (r-scuttle): Update to 1.2.1.
2021-08-24 12:28:13 +02:00
Ricardo Wurmus
2897ad3178
gnu: r-beachmat: Update to 2.8.1.
* gnu/packages/bioconductor.scm (r-beachmat): Update to 2.8.1.
2021-08-24 12:28:13 +02:00
Ricardo Wurmus
da7e7c9de8
gnu: r-biocset: Update to 1.6.1.
* gnu/packages/bioconductor.scm (r-biocset): Update to 1.6.1.
2021-08-24 12:28:13 +02:00
Ricardo Wurmus
9ff9a4756d
gnu: r-universalmotif: Update to 1.10.2.
* gnu/packages/bioconductor.scm (r-universalmotif): Update to 1.10.2.
2021-08-24 12:28:13 +02:00
Ricardo Wurmus
0022f40462
gnu: r-clusterprofiler: Update to 4.0.4.
* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 4.0.4.
2021-08-24 12:28:13 +02:00
Ricardo Wurmus
5543456ae9
gnu: r-dose: Update to 3.18.2.
* gnu/packages/bioconductor.scm (r-dose): Update to 3.18.2.
2021-08-24 12:28:13 +02:00
Ricardo Wurmus
1c23b99a3c
gnu: r-batchelor: Update to 1.8.1.
* gnu/packages/bioconductor.scm (r-batchelor): Update to 1.8.1.
2021-08-24 12:28:12 +02:00
Ricardo Wurmus
82d6774757
gnu: r-ggtree: Update to 3.0.3.
* gnu/packages/bioconductor.scm (r-ggtree): Update to 3.0.3.
2021-08-24 12:28:12 +02:00
Ricardo Wurmus
e4ad91eb3e
gnu: r-treeio: Update to 1.16.2.
* gnu/packages/bioconductor.scm (r-treeio): Update to 1.16.2.
2021-08-24 12:28:12 +02:00
Ricardo Wurmus
917f0def66
gnu: r-matrixgenerics: Update to 1.4.2.
* gnu/packages/bioconductor.scm (r-matrixgenerics): Update to 1.4.2.
2021-08-24 12:28:12 +02:00
Ricardo Wurmus
3ef4c12a49
gnu: r-chippeakanno: Update to 3.26.3.
* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.26.3.
2021-08-24 12:28:12 +02:00
Ricardo Wurmus
33fedd371a
gnu: r-diffbind: Update to 3.2.5.
* gnu/packages/bioconductor.scm (r-diffbind): Update to 3.2.5.
2021-08-24 12:28:12 +02:00
Ricardo Wurmus
514454cc8f
gnu: r-structuralvariantannotation: Update to 1.8.2.
* gnu/packages/bioconductor.scm (r-structuralvariantannotation): Update to 1.8.2.
[propagated-inputs]: Add r-genomeinfodb, r-iranges, r-s4vectors, and
r-summarizedexperiment.
2021-08-24 12:28:12 +02:00
Ricardo Wurmus
1920e567a7
gnu: r-rtracklayer: Update to 1.52.1.
* gnu/packages/bioconductor.scm (r-rtracklayer): Update to 1.52.1.
2021-08-24 12:28:12 +02:00
Ricardo Wurmus
495c50c68d
gnu: r-limma: Update to 3.48.3.
* gnu/packages/bioconductor.scm (r-limma): Update to 3.48.3.
2021-08-24 12:28:12 +02:00
Ricardo Wurmus
3277c4e749
gnu: r-genomicfeatures: Update to 1.44.1.
* gnu/packages/bioconductor.scm (r-genomicfeatures): Update to 1.44.1.
2021-08-24 12:28:12 +02:00
Ricardo Wurmus
8df84bedf7
gnu: r-ensembldb: Update to 2.16.4.
* gnu/packages/bioconductor.scm (r-ensembldb): Update to 2.16.4.
2021-08-24 12:28:12 +02:00
Ricardo Wurmus
e46cf457bb
gnu: r-biostrings: Update to 2.60.2.
* gnu/packages/bioconductor.scm (r-biostrings): Update to 2.60.2.
2021-08-24 12:28:12 +02:00
Ricardo Wurmus
227579e84a
gnu: r-biomart: Update to 2.48.3.
* gnu/packages/bioconductor.scm (r-biomart): Update to 2.48.3.
2021-08-24 12:28:12 +02:00
Ricardo Wurmus
1aceb93a6f
gnu: r-ldblock: Update to 1.22.1.
* gnu/packages/bioconductor.scm (r-ldblock): Update to 1.22.1.
2021-08-04 16:21:17 +02:00
Ricardo Wurmus
5909dd9e8e
gnu: r-roc: Update to 1.68.1.
* gnu/packages/bioconductor.scm (r-roc): Update to 1.68.1.
2021-08-04 16:21:16 +02:00
Ricardo Wurmus
b94c750e01
gnu: r-mixomics: Update to 6.16.3.
* gnu/packages/bioconductor.scm (r-mixomics): Update to 6.16.3.
2021-08-04 16:21:16 +02:00
Ricardo Wurmus
6da8e99c9c
gnu: r-gosemsim: Update to 2.18.1.
* gnu/packages/bioconductor.scm (r-gosemsim): Update to 2.18.1.
2021-08-04 16:21:12 +02:00
Ricardo Wurmus
75ec0fa243
gnu: Add r-tximeta.
* gnu/packages/bioconductor.scm (r-tximeta): New variable.
2021-08-04 13:04:04 +02:00
Ricardo Wurmus
ffb381856d
gnu: r-xcms: Update to 3.14.1.
* gnu/packages/bioconductor.scm (r-xcms): Update to 3.14.1.
2021-07-29 20:20:18 +02:00
Ricardo Wurmus
e06beb503c
gnu: r-reportingtools: Update to 2.32.1.
* gnu/packages/bioconductor.scm (r-reportingtools): Update to 2.32.1.
2021-07-29 20:20:15 +02:00
Ricardo Wurmus
a32241fcda
gnu: r-catalyst: Update to 1.16.2.
* gnu/packages/bioconductor.scm (r-catalyst): Update to 1.16.2.
2021-07-28 22:26:56 +02:00
Ricardo Wurmus
9d7eb480f8
gnu: r-mixomics: Update to 6.16.2.
* gnu/packages/bioconductor.scm (r-mixomics): Update to 6.16.2.
2021-07-28 22:26:56 +02:00
Ricardo Wurmus
d0d3637c92
gnu: r-rsubread: Update to 2.6.4.
* gnu/packages/bioconductor.scm (r-rsubread): Update to 2.6.4.
2021-07-28 22:26:56 +02:00
Ricardo Wurmus
8d9626dd7d
gnu: r-annotatr: Update to 1.18.1.
* gnu/packages/bioconductor.scm (r-annotatr): Update to 1.18.1.
2021-07-28 22:26:56 +02:00
Ricardo Wurmus
73fa220b43
gnu: r-motifbreakr: Update to 2.6.1.
* gnu/packages/bioconductor.scm (r-motifbreakr): Update to 2.6.1.
2021-07-28 22:26:55 +02:00
Ricardo Wurmus
336b110f69
gnu: r-scone: Update to 1.16.1.
* gnu/packages/bioconductor.scm (r-scone): Update to 1.16.1.
2021-07-28 22:26:55 +02:00
Ricardo Wurmus
fd0851ee97
gnu: r-chippeakanno: Update to 3.26.2.
* gnu/packages/bioconductor.scm (r-chippeakanno): Update to 3.26.2.
2021-07-28 22:26:55 +02:00
Ricardo Wurmus
acc62073be
gnu: r-ensembldb: Update to 2.16.3.
* gnu/packages/bioconductor.scm (r-ensembldb): Update to 2.16.3.
2021-07-28 22:26:55 +02:00
Tobias Geerinckx-Rice
5079aa2afd
gnu: r-structuralvariantannotation: Update to 1.8.1.
The previous 1.8.0 source tarball has vanished.

* gnu/packages/bioconductor.scm (r-structuralvariantannotation):
Update to 1.8.1.
[propagated-inputs]: Add r-genomicfeatures.
2021-07-25 19:39:11 +02:00
Ricardo Wurmus
4140b66837
gnu: r-gviz: Update to 1.36.2.
* gnu/packages/bioconductor.scm (r-gviz): Update to 1.36.2.
2021-07-10 21:35:29 +02:00
Ricardo Wurmus
564142d25e
gnu: r-catalyst: Update to 1.16.1.
* gnu/packages/bioconductor.scm (r-catalyst): Update to 1.16.1.
2021-07-10 21:35:29 +02:00
Ricardo Wurmus
c4ffceb0c2
gnu: r-rhdf5lib: Update to 1.14.2.
* gnu/packages/bioconductor.scm (r-rhdf5lib): Update to 1.14.2.
2021-07-10 21:35:29 +02:00
Ricardo Wurmus
e957d6c93b
gnu: r-bioconcotk: Update to 1.12.1.
* gnu/packages/bioconductor.scm (r-bioconcotk): Update to 1.12.1.
2021-07-10 21:35:29 +02:00
Ricardo Wurmus
1cbcf54204
gnu: r-biocstyle: Update to 2.20.2.
* gnu/packages/bioconductor.scm (r-biocstyle): Update to 2.20.2.
2021-07-10 21:35:29 +02:00
Ricardo Wurmus
23abd7b6b6
gnu: r-mixomics: Update to 6.16.1.
* gnu/packages/bioconductor.scm (r-mixomics): Update to 6.16.1.
2021-07-10 21:35:29 +02:00
Ricardo Wurmus
3d539883ca
gnu: r-rsubread: Update to 2.6.3.
* gnu/packages/bioconductor.scm (r-rsubread): Update to 2.6.3.
2021-07-10 21:35:29 +02:00
Ricardo Wurmus
a94d1e3b4c
gnu: r-annaffy: Update to 1.64.2.
* gnu/packages/bioconductor.scm (r-annaffy): Update to 1.64.2.
2021-07-10 21:35:29 +02:00
Ricardo Wurmus
344c901a4c
gnu: r-clusterprofiler: Update to 4.0.2.
* gnu/packages/bioconductor.scm (r-clusterprofiler): Update to 4.0.2.
2021-07-10 21:35:29 +02:00
Ricardo Wurmus
a5e6826020
gnu: r-enrichplot: Update to 1.12.2.
* gnu/packages/bioconductor.scm (r-enrichplot): Update to 1.12.2.
2021-07-10 21:35:29 +02:00
Ricardo Wurmus
209642912d
gnu: r-dose: Update to 3.18.1.
* gnu/packages/bioconductor.scm (r-dose): Update to 3.18.1.
2021-07-10 21:35:29 +02:00
Ricardo Wurmus
072533f579
gnu: r-diffbind: Update to 3.2.4.
* gnu/packages/bioconductor.scm (r-diffbind): Update to 3.2.4.
2021-07-10 21:35:28 +02:00
Ricardo Wurmus
9496f34e23
gnu: r-systempiper: Update to 1.26.3.
* gnu/packages/bioconductor.scm (r-systempiper): Update to 1.26.3.
[propagated-inputs]: Add r-crayon and r-s4vectors.
2021-07-10 21:35:28 +02:00
Ricardo Wurmus
ea52ad7d4f
gnu: r-mzr: Update to 2.26.1.
* gnu/packages/bioconductor.scm (r-mzr): Update to 2.26.1.
2021-07-10 21:35:28 +02:00
Ricardo Wurmus
8936e45327
gnu: r-limma: Update to 3.48.1.
* gnu/packages/bioconductor.scm (r-limma): Update to 3.48.1.
2021-07-10 21:35:28 +02:00