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Author SHA1 Message Date
Ricardo Wurmus
4b58ebd845
gnu: Add r-singler. 
* gnu/packages/bioconductor.scm (r-singler): New variable.
 2021-12-16 22:46:32 +01:00
Ricardo Wurmus
443110cd86
gnu: Add r-celldex. 
* gnu/packages/bioconductor.scm (r-celldex): New variable.
 2021-12-16 22:46:32 +01:00
Ricardo Wurmus
fa03268c89
gnu: Add r-maftools. 
* gnu/packages/bioconductor.scm (r-maftools): New variable.
 2021-12-14 17:38:16 +01:00
Ricardo Wurmus
9a1ab21b07
gnu: Add r-tcgabiolinks. 
* gnu/packages/bioconductor.scm (r-tcgabiolinks): New variable.
 2021-12-14 17:38:16 +01:00
Ricardo Wurmus
8b0adf9f7e
gnu: Add r-tcgabiolinksgui-data. 
* gnu/packages/bioconductor.scm (r-tcgabiolinksgui-data): New variable.
 2021-12-14 17:38:15 +01:00
Maxim Cournoyer
6dffced09e
Merge branch 'core-updates-frozen' into 'master'. 
At last!
 2021-12-13 16:29:21 -05:00
Ludovic Courtès
e3196755e6
gnu: Further simplify package inputs. 
This is the result of running:

  ./pre-inst-env guix style --input-simplification=safe

and manually undoing changes on a dozen of packages to reduce
rebuilds (derivations for emacs, icecat, and libreoffice are unchanged.)
 2021-12-13 22:15:07 +01:00
Ludovic Courtès
8394619bac
gnu: Simplify package inputs. 
This commit was obtained by running:

  ./pre-inst-env guix style

without any additional argument.
 2021-12-13 17:48:25 +01:00
Mădălin Ionel Patrașcu
5f32468acf
gnu: Add r-chromvarmotifs. 
* gnu/packages/bioconductor.scm (r-chromvarmotifs): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2021-12-13 13:38:27 +01:00
Ricardo Wurmus
cf2251b9f7
gnu: Add r-sanssouci. 
* gnu/packages/bioconductor.scm (r-sanssouci): New variable.
 2021-12-13 11:17:43 +01:00
Ricardo Wurmus
73d2fb94e3
gnu: Add r-isoformswitchanalyzer. 
* gnu/packages/bioconductor.scm (r-isoformswitchanalyzer): New variable.
 2021-12-13 10:54:16 +01:00
Ricardo Wurmus
495646aa73
gnu: Add r-drimseq. 
* gnu/packages/bioconductor.scm (r-drimseq): New variable.
 2021-12-13 10:54:05 +01:00
Marcel Schilling
531a69ecb6
gnu: Add r-dearseq. 
* gnu/packages/bioconductor.scm (r-dearseq): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2021-12-13 09:50:58 +01:00
Ricardo Wurmus
8fa7de386c
gnu: r-flowclust: Add gsl. 
* gnu/packages/bioconductor.scm (r-flowclust)[inputs]: Remove accidentally
committed comment character.
 2021-12-03 13:31:32 +01:00
Ricardo Wurmus
c2c63a00de
gnu: Add r-scdblfinder. 
* gnu/packages/bioconductor.scm (r-scdblfinder): New variable.
 2021-12-02 10:03:07 +01:00
Nicolas Vallet
d7477f09c3
gnu: Add r-phyloseq. 
* gnu/packages/cran.scm (r-phyloseq): New variable

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2021-12-01 09:29:26 +01:00
Ricardo Wurmus
3411f8d512
gnu: Add r-fmcsr. 
* gnu/packages/bioconductor.scm (r-fmcsr): New variable.
 2021-11-30 22:48:07 +01:00
Mădălin Ionel Patrașcu
60abbbf8c5
gnu: Add r-xmapbridge. 
* gnu/packages/bioconductor.scm (r-xmapbridge): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2021-11-27 10:46:01 +01:00
Mădălin Ionel Patrașcu
aa2aaa65ce
gnu: Add r-xina. 
* gnu/packages/bioconductor.scm (r-xina): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2021-11-27 10:36:27 +01:00
Mădălin Ionel Patrașcu
c96d8ce720
gnu: Add r-stringdb. 
* gnu/packages/bioconductor.scm (r-stringdb): New variable.

Signed-off-by: Ricardo Wurmus <rekado@elephly.net>
 2021-11-27 10:36:27 +01:00
zimoun
128fd2ab59
gnu: Add r-derfinderhelper. 
* gnu/packages/bioconductor.scm (r-derfinderhelper): New variable.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
 2021-11-26 13:51:00 +01:00
Ricardo Wurmus
651fc759d7
gnu: r-s4vectors: Update to 0.32.3. 
* gnu/packages/bioconductor.scm (r-s4vectors): Update to 0.32.3.
 2021-11-24 13:06:53 +01:00
Ricardo Wurmus
5e806fbaf4
gnu: r-mixomics: Update to 6.18.1. 
* gnu/packages/bioconductor.scm (r-mixomics): Update to 6.18.1.
 2021-11-24 13:06:53 +01:00
Ricardo Wurmus
5c6225b641
gnu: r-xcms: Update to 3.16.1. 
* gnu/packages/bioconductor.scm (r-xcms): Update to 3.16.1.
 2021-11-24 13:06:52 +01:00
Ricardo Wurmus
370bb5851a
gnu: r-dose: Update to 3.20.1. 
* gnu/packages/bioconductor.scm (r-dose): Update to 3.20.1.
 2021-11-24 13:06:52 +01:00
Ricardo Wurmus
010806f78a
gnu: r-genomicranges: Update to 1.46.1. 
* gnu/packages/bioconductor.scm (r-genomicranges): Update to 1.46.1.
 2021-11-24 13:06:52 +01:00
Ricardo Wurmus
cfeccf8e90
gnu: r-biocparallel: Update to 1.28.1. 
* gnu/packages/bioconductor.scm (r-biocparallel): Update to 1.28.1.
 2021-11-24 13:06:52 +01:00
Ricardo Wurmus
67de75778f
gnu: r-biomart: Update to 2.50.1. 
* gnu/packages/bioconductor.scm (r-biomart): Update to 2.50.1.
 2021-11-24 13:06:52 +01:00
Ricardo Wurmus
639bfeca2b
gnu: Add r-bsgenome-drerio-ucsc-danrer11. 
* gnu/packages/bioconductor.scm (r-bsgenome-drerio-ucsc-danrer11): New variable.
 2021-11-24 12:13:13 +01:00
Vagrant Cascadian
b23d7aa880
gnu: r-bgeecall: Fix typo. 
* gnu/packages/bioconductor.scm (r-bgeecall)[description]: Switch from "allows
  to generate" to "allows generating".
 2021-11-18 14:20:03 -08:00
Vagrant Cascadian
6fc80d9d4c
gnu: r-msfeatures: Fix typos. 
* gnu/packages/bioconductor.scm (r-msfeatures)[description]: Switch from
  "allows to" to "can be used" and from "allows to aggregate" to "allows
  aggregating".
 2021-11-18 14:19:54 -08:00
Ricardo Wurmus
93b2ce1197
gnu: r-tximeta: Update to 1.12.3. 
* gnu/packages/bioconductor.scm (r-tximeta): Update to 1.12.3.
 2021-11-18 13:18:01 +00:00
Ricardo Wurmus
6a5e5bb9e2
gnu: r-biodb: Update to 1.2.1. 
* gnu/packages/bioconductor.scm (r-biodb): Update to 1.2.1.
 2021-11-18 13:18:01 +00:00
Ricardo Wurmus
13f8140290
gnu: r-chromstar: Update to 1.20.2. 
* gnu/packages/bioconductor.scm (r-chromstar): Update to 1.20.2.
 2021-11-18 13:18:00 +00:00
Ricardo Wurmus
34d17d5f62
gnu: r-scran: Update to 1.22.1. 
* gnu/packages/bioconductor.scm (r-scran): Update to 1.22.1.
 2021-11-18 13:18:00 +00:00
Ricardo Wurmus
0f72bdada5
gnu: r-hdf5array: Update to 1.22.1. 
* gnu/packages/bioconductor.scm (r-hdf5array): Update to 1.22.1.
 2021-11-18 13:18:00 +00:00
Ricardo Wurmus
ddb9d228b4
gnu: r-s4vectors: Update to 0.32.2. 
* gnu/packages/bioconductor.scm (r-s4vectors): Update to 0.32.2.
 2021-11-18 13:18:00 +00:00
Ricardo Wurmus
ef5bbc3416
gnu: r-biocset: Update to 1.8.1. 
* gnu/packages/bioconductor.scm (r-biocset): Update to 1.8.1.
 2021-11-18 13:18:00 +00:00
Ricardo Wurmus
3cfeeace83
gnu: r-biocpkgtools: Update to 1.12.2. 
* gnu/packages/bioconductor.scm (r-biocpkgtools): Update to 1.12.2.
 2021-11-18 13:17:59 +00:00
Ricardo Wurmus
6350413325
gnu: r-mixomics: Update to 6.18.0. 
* gnu/packages/bioconductor.scm (r-mixomics): Update to 6.18.0.
 2021-11-18 13:17:59 +00:00
Ricardo Wurmus
a03c84244d
gnu: r-rsubread: Update to 2.8.1. 
* gnu/packages/bioconductor.scm (r-rsubread): Update to 2.8.1.
 2021-11-18 13:17:59 +00:00
Ricardo Wurmus
d30d9c6001
gnu: r-geoquery: Update to 2.62.1. 
* gnu/packages/bioconductor.scm (r-geoquery): Update to 2.62.1.
[propagated-inputs]: Add r-r-utils.
 2021-11-18 13:17:59 +00:00
Ricardo Wurmus
f4b108d872
gnu: r-icobra: Update to 1.22.1. 
* gnu/packages/bioconductor.scm (r-icobra): Update to 1.22.1.
 2021-11-18 13:17:58 +00:00
Ricardo Wurmus
7e9a13d789
gnu: r-ggtree: Update to 3.2.1. 
* gnu/packages/bioconductor.scm (r-ggtree): Update to 3.2.1.
 2021-11-18 13:17:58 +00:00
Ricardo Wurmus
e52eb93765
gnu: r-treeio: Update to 1.18.1. 
* gnu/packages/bioconductor.scm (r-treeio): Update to 1.18.1.
 2021-11-18 13:17:58 +00:00
Ricardo Wurmus
34ba8b256b
gnu: r-systempiper: Update to 2.0.1. 
* gnu/packages/bioconductor.scm (r-systempiper): Update to 2.0.1.
 2021-11-18 13:17:58 +00:00
Ricardo Wurmus
6b1375d3af
gnu: r-msnbase: Update to 2.20.1. 
* gnu/packages/bioconductor.scm (r-msnbase): Update to 2.20.1.
 2021-11-18 13:17:58 +00:00
Ricardo Wurmus
f917fa4e50
gnu: r-ensembldb: Update to 2.18.2. 
* gnu/packages/bioconductor.scm (r-ensembldb): Update to 2.18.2.
 2021-11-18 13:17:57 +00:00
Ricardo Wurmus
30038c5738
gnu: r-chipseeker: Update to 1.30.2. 
* gnu/packages/bioconductor.scm (r-chipseeker): Update to 1.30.2.
 2021-11-18 13:17:57 +00:00
Ricardo Wurmus
443ed83bc3
gnu: r-annotationdbi: Update to 1.56.2. 
* gnu/packages/bioconductor.scm (r-annotationdbi): Update to 1.56.2.
 2021-11-18 13:17:57 +00:00