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1424 commits

Author SHA1 Message Date
Ricardo Wurmus
dfeb135ef0
gnu: r-affyio: Update to 1.62.0. 
* gnu/packages/bioconductor.scm (r-affyio): Update to 1.62.0.
 2021-06-05 09:12:41 +02:00
Ricardo Wurmus
a9083169c6
gnu: r-affycoretools: Update to 1.64.0. 
* gnu/packages/bioconductor.scm (r-affycoretools): Update to 1.64.0.
 2021-06-05 09:12:41 +02:00
Ricardo Wurmus
3abb0b6523
gnu: r-affycontam: Update to 1.50.0. 
* gnu/packages/bioconductor.scm (r-affycontam): Update to 1.50.0.
 2021-06-05 09:12:41 +02:00
Ricardo Wurmus
bd17befeb1
gnu: r-affycompatible: Update to 1.52.0. 
* gnu/packages/bioconductor.scm (r-affycompatible): Update to 1.52.0.
 2021-06-05 09:12:41 +02:00
Ricardo Wurmus
b045bf2d6f
gnu: r-affycomp: Update to 1.68.0. 
* gnu/packages/bioconductor.scm (r-affycomp): Update to 1.68.0.
 2021-06-05 09:12:41 +02:00
Ricardo Wurmus
af04e2cc12
gnu: r-affy: Update to 1.70.0. 
* gnu/packages/bioconductor.scm (r-affy): Update to 1.70.0.
 2021-06-05 09:12:41 +02:00
Ricardo Wurmus
60b9546472
gnu: r-iranges: Update to 2.26.0. 
* gnu/packages/bioconductor.scm (r-iranges): Update to 2.26.0.
 2021-06-05 09:12:41 +02:00
Ricardo Wurmus
cfd4c05bd4
gnu: r-ideoviz: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-ideoviz): Update to 1.28.0.
 2021-06-05 09:12:40 +02:00
Ricardo Wurmus
4075ac7287
gnu: r-bluster: Update to 1.2.1. 
* gnu/packages/bioconductor.scm (r-bluster): Update to 1.2.1.
[propagated-inputs]: Add r-cluster.
 2021-06-05 09:12:40 +02:00
Ricardo Wurmus
8eb0c715e3
gnu: r-delayedarray: Update to 0.18.0. 
* gnu/packages/bioconductor.scm (r-delayedarray): Update to 0.18.0.
 2021-06-05 09:12:40 +02:00
Ricardo Wurmus
f0f839c124
gnu: r-deepsnv: Update to 1.38.0. 
* gnu/packages/bioconductor.scm (r-deepsnv): Update to 1.38.0.
[inputs]: Remove zlib.
[native-inputs]: Add r-knitr.
 2021-06-05 09:12:40 +02:00
Ricardo Wurmus
dec096f827
gnu: r-decipher: Update to 2.20.0. 
* gnu/packages/bioconductor.scm (r-decipher): Update to 2.20.0.
[propagated-inputs]: Add r-dbi, r-iranges, r-s4vectors, and r-xvector.
 2021-06-05 09:12:40 +02:00
Ricardo Wurmus
116df58449
gnu: r-cummerbund: Update to 2.34.0. 
* gnu/packages/bioconductor.scm (r-cummerbund): Update to 2.34.0.
 2021-06-05 09:12:40 +02:00
Ricardo Wurmus
e6c5d8ce2c
gnu: r-coverageview: Update to 1.30.0. 
* gnu/packages/bioconductor.scm (r-coverageview): Update to 1.30.0.
 2021-06-05 09:12:40 +02:00
Ricardo Wurmus
7bac473d06
gnu: r-biocgenerics: Update to 0.38.0. 
* gnu/packages/bioconductor.scm (r-biocgenerics): Update to 0.38.0.
 2021-06-05 09:12:40 +02:00
Ricardo Wurmus
b05761a5a9
gnu: r-biocversion: Update to 3.13.1. 
* gnu/packages/bioconductor.scm (r-biocversion): Update to 3.13.1.
 2021-06-05 09:12:40 +02:00
Ricardo Wurmus
405b386656
gnu: r-aneufinder: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-aneufinder): Update to 1.20.0.
 2021-06-05 09:12:40 +02:00
Ricardo Wurmus
75817956c1
gnu: r-hdf5array: Update to 1.20.0. 
* gnu/packages/bioconductor.scm (r-hdf5array): Update to 1.20.0.
[arguments]: Remove.
[propagated-inputs]: Add r-rhdf5filters.
 2021-06-05 09:12:40 +02:00
Ricardo Wurmus
bfa23ec526
gnu: r-cytoml: Update to 2.4.0. 
* gnu/packages/bioconductor.scm (r-cytoml): Update to 2.4.0.
[arguments]: Remove.
 2021-06-05 09:12:40 +02:00
Ricardo Wurmus
764e2dba20
gnu: r-flowworkspace: Update to 4.4.0. 
* gnu/packages/bioconductor.scm (r-flowworkspace): Update to 4.4.0.
[arguments]: Remove.
[propagated-inputs]: Add r-delayedarray and r-s4vectors.
 2021-06-05 09:12:40 +02:00
Ricardo Wurmus
b9751b629c
gnu: r-ncdfflow: Update to 2.38.0. 
* gnu/packages/bioconductor.scm (r-ncdfflow): Update to 2.38.0.
[arguments]: Remove.
 2021-06-05 09:12:40 +02:00
Ricardo Wurmus
5c37a048bb
gnu: r-cytolib: Update to 2.4.0. 
* gnu/packages/bioconductor.scm (r-cytolib): Update to 2.4.0.
[arguments]: Remove.
[native-inputs]: Remove pkg-config.
 2021-06-05 09:12:40 +02:00
Ricardo Wurmus
782d27f77d
gnu: r-rhdf5: Update to 2.36.0. 
* gnu/packages/bioconductor.scm (r-rhdf5): Update to 2.36.0.
[arguments]: Remove.
 2021-06-05 09:12:40 +02:00
Ricardo Wurmus
87d06a725f
gnu: r-mzr: Update to 2.26.0. 
* gnu/packages/bioconductor.scm (r-mzr): Update to 2.26.0.
[arguments]: Remove obsolute substitution.
 2021-06-05 09:12:40 +02:00
Ricardo Wurmus
5d13aab6ca
gnu: r-msnid: Update to 1.26.0. 
* gnu/packages/bioconductor.scm (r-msnid): Update to 1.26.0.
[arguments]: Set HOME variable.
 2021-06-05 09:12:40 +02:00
Ricardo Wurmus
d0a7dc0cb6
gnu: r-bioccheck: Update to 1.28.0. 
* gnu/packages/bioconductor.scm (r-bioccheck): Update to 1.28.0.
[arguments]: Remove.
 2021-06-05 09:12:39 +02:00
Ricardo Wurmus
1b0338d76b
gnu: r-rhdf5lib: Update to 1.14.0. 
* gnu/packages/bioconductor.scm (r-rhdf5lib): Update to 1.14.0.
[source]: Update deletions.
[arguments]: Update substitutions.
[inputs]: Move zlib from here...
[propagated-inputs]: ...to here.
 2021-06-05 09:12:39 +02:00
Ricardo Wurmus
53ec97713a
gnu: Add r-metapod. 
* gnu/packages/bioconductor.scm (r-metapod): New variable.
 2021-06-05 09:12:39 +02:00
Ricardo Wurmus
8caab75883
gnu: Add r-ggtree. 
* gnu/packages/bioconductor.scm (r-ggtree): New variable.
 2021-06-05 09:12:39 +02:00
Ricardo Wurmus
ab4a91b252
gnu: Add r-treeio. 
* gnu/packages/bioconductor.scm (r-treeio): New variable.
 2021-06-05 09:12:39 +02:00
Ricardo Wurmus
fd4fa40ac4
gnu: Add r-scaledmatrix. 
* gnu/packages/bioconductor.scm (r-scaledmatrix): New variable.
 2021-06-05 09:12:39 +02:00
Ricardo Wurmus
efefb2be3a
gnu: Add r-trajectoryutils. 
* gnu/packages/bioconductor.scm (r-trajectoryutils): New variable.
 2021-06-05 09:12:39 +02:00
Ricardo Wurmus
ce99b4da63
gnu: Add r-restfulr. 
* gnu/packages/bioconductor.scm (r-restfulr): New variable.
 2021-06-05 09:12:39 +02:00
Ricardo Wurmus
8cc146b24a
gnu: r-bisquerna: Update to 1.0.5. 
* gnu/packages/bioconductor.scm (r-bisquerna): Update to 1.0.5.
[native-inputs]: Add r-knitr.
 2021-06-02 17:27:07 +02:00
Ricardo Wurmus
ec543ba672
gnu: r-chipseeker: Move out of experiment section. 
* gnu/packages/bioconductor.scm (r-chipseeker): Move the package from the
"experiment" section to the section for regular Bioconductor packages.
 2021-05-31 15:54:41 +02:00
Ricardo Wurmus
a6e7afd4d5
gnu: r-spp: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-spp): Move from here...
* gnu/packages/bioconductor.scm (r-spp): ...to here.
 2021-05-31 15:53:20 +02:00
Ricardo Wurmus
1a6108ce2b
gnu: r-geneoverlap: Move out of experiment section. 
* gnu/packages/bioconductor.scm (r-geneoverlap): Move the package definition
out of the "experiment" section into the section for regular Bioconductor
packages.
 2021-05-31 15:53:09 +02:00
zimoun
c294c0d782
gnu: r-methylkit: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-methylkit): Move from here...
* gnu/packages/bioconductor.scm (r-methylkit): ...to here.
 2021-05-31 15:39:49 +02:00
zimoun
7ab44aeed6
gnu: r-copywriter: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-copywriter): Move from here...
* gnu/packages/bioconductor.scm (r-copywriter): ...to here.
 2021-05-31 15:39:49 +02:00
zimoun
36cb01066c
gnu: r-copyhelper: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-copyhelper): Move from here...
* gnu/packages/bioconductor.scm (r-copyhelper): ...to here.
[source]: Repalce 'string-append' by 'bioconductor-uri' with 'experiment.
 2021-05-31 15:39:47 +02:00
zimoun
31e50e1f48
gnu: r-chipseq: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-chipseq): Move from here...
* gnu/packages/bioconductor.scm (r-chipseq): ...to here.
 2021-05-31 15:39:00 +02:00
zimoun
0eaa75c811
gnu: r-rhdf5: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-rhdf5): Move from here...
* gnu/packages/bioconductor.scm (r-rhdf5): ...to here.
 2021-05-31 15:39:00 +02:00
zimoun
cc1dbea883
gnu: r-annotationfilter: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-annotationfilter): Move from here...
* gnu/packages/bioconductor.scm (r-annotationfilter): ...to here.
 2021-05-31 15:39:00 +02:00
zimoun
67e99369c1
gnu: r-rhdf5filters: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-rhdf5filters): Move from here...
* gnu/packages/bioconductor.scm (r-rhdf5filters): ...to here.
 2021-05-31 15:39:00 +02:00
zimoun
b6e84d30eb
gnu: r-tximport: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-tximport): Move from here...
* gnu/packages/bioconductor.scm (r-tximport): ...to here.
 2021-05-31 15:39:00 +02:00
zimoun
bf8f502956
gnu: r-mutationalpatterns: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-mutationalpatterns): Move from here...
* gnu/packages/bioconductor.scm (r-mutationalpatterns): ...to here.
 2021-05-31 15:39:00 +02:00
zimoun
7360dea624
gnu: r-rcas: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-rcas): Move from here...
* gnu/packages/bioconductor.scm (r-rcas): ...to here.
 2021-05-31 15:39:00 +02:00
zimoun
45b6db4fb4
gnu: r-bamsignals: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-bamsignals): Move from here...
* gnu/packages/bioconductor.scm (r-bamsignals): ...to here.
 2021-05-31 15:38:59 +02:00
zimoun
043c309d15
gnu: r-rhtslib: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-rhtslib): Move from here...
* gnu/packages/bioconductor.scm (r-rhtslib): ...to here.
 2021-05-31 15:38:59 +02:00
zimoun
e0c81584ea
gnu: r-zlibbioc: Move to (gnu packages bioconductor). 
* gnu/packages/bioinformatics.scm (r-zlibbioc): Move from here...
* gnu/packages/bioconductor.scm (r-zlibbioc): ...to here.
 2021-05-31 15:38:58 +02:00