The octave-forge package is the result of The GNU Octave Repositry project,
which is intended to be a central location for custom scripts, functions and
extensions for GNU Octave. contains the source for all the functions plus
build and install scripts.
Ruby/GSL is a Ruby extension library for GSL (GNU Scientific Library),
which provides a number of functions and methods for numerical
computing in Ruby.
WWW: https://rubygems.org/gems/rb-gsl
PR: 196994
Submitted by: Shin-ya MURAKAMI <murashin@gfd-dennou.org>
Approved by: mentor (implicit)
The Vowpal Wabbit (VW) project is a fast out-of-core learning system
sponsored by Microsoft Research and (previously) Yahoo! Research.
There are two ways to have a fast learning algorithm: (a) start with a slow
algorithm and speed it up, or (b) build an intrinsically fast learning
algorithm. This project is about approach (b), and it's reached a state
where it may be useful to others as a platform for research and experimentation.
There are several optimization algorithms available with the baseline
being sparse gradient descent (GD) on a loss function (several are available).
WWW: https://github.com/JohnLangford/vowpal_wabbit/wiki
The octave-forge package is the result of The GNU Octave Repositry project,
which is intended to be a central location for custom scripts, functions and
extensions for GNU Octave. contains the source for all the functions plus
build and install scripts.
This is optics.
to eliminate huge TeXLive dependency. Note that TeX terminal support is
still enabled by default because it works without them.
- Add Lua dependency to support TeX/Tikz terminal.
Approved by: glewis (maintainer)
Gnome 3.14.1 and Cinnamon 2.2.16 are supported on FreeBSD 9.3-RELEASE and up.
This commit removes the old GNOME 2 desktop, bindings and some ports that
can't be compiled. A few ports where updated to more recent versions to
allow them to compile with this update.
Apart from updating ports to newer versions
GDM is more integrated with gnome-shell now, and handles several things for
the GNOME desktop such as screen locking. If you want to use GNOME 3 via
startx, you will have to add your own lock screen/screensaver. For example xscreensaver
can be used for sessions started without GDM.
Shell Extensions can be installed via https://extensions.gnome.org/ , we have
ported a few that can't be installed via this way.
The old gnome-utils and gnome-games ports where split up into single ports
and where converted to meta-ports.
gnome-terminal requires a UTF-8 locale to run, gdm handles this already, but
if you use startx you need to do this yourself.
Upgrade instructions:
Delete the old and conflicting packages:
# pkg delete clutter gnome-utils gnome-panel gnome-keyring vala-vapigen \
guile gcalctool gnome-media libgnomekbd
# pkg delete gnome-screensaver gnome-applets bug-buddy evolution-exchange \
evolution-webcal gnome-system-tools seahorse-plugins gnome-control-center
For package users the following lines will be enough:
# pkg upgrade
# pkg install gnome3
For ports users should do the following:
# portmaster -a
# portmaster x11/gnome3
We are currently aware of two issues. The first issue is a bug in the
file monitoring code in the glib20 port. This bug causes glib programs
to crash when files in a monitored directory are added or removed.
Upstream is aware of the problem, but since the problem is quite complex
there is no solution yet. This problem isn't restricted to BSD.
The second issue is that on certain video cards totem will display a
purple/pink overlay on the video. It not clear yet where the issues
comes from.
Major thanks goes to Gustau Perez for being a driving force behind getting
GNOME 3 up to speed again. Also thanks to Antoine Brodin for running the exp-runs.
This update was also made possible by:
Joe Maloney
Kris Moore
Beeblebrox
Ryan Lortie
Antoine Jacoutot
and everyone I missed
2014-11-07 math/elmer-umfpack: Obsoleted by cad/elmerfem
2014-11-07 science/elmer-eio: Obsoleted by cad/elmerfem
2014-11-07 science/elmer-matc: Obsoleted by cad/elmerfem
2014-11-07 science/elmer-meshgen2d: Obsoleted by cad/elmerfem
2014-11-07 science/elmergrid: Obsoleted by cad/elmerfem
pyfst provides a Python interface to the excellent OpenFst library.
Most of the essential functionality of the library is exposed through a
simplified API, allowing quick prototyping of algorithms using finite-state
methods and easy visual debugging of the results obtained by applying
FST operations.
WWW: http://pyfst.github.io
- Create a slave port to build a package with this option
- Switch to an external plist, because many files are added.
PR: ports/193810
Submitted by: /me
Approved by: bf (maintainer, by private mail)
The octave-forge package is the result of The GNU Octave Repositry project,
which is intended to be a central location for custom scripts, functions and
extensions for GNU Octave. contains the source for all the functions plus
build and install scripts.
This is stk.
----------------------------------------------------------------------------
The STK is a (not so) Small Toolbox for Kriging. Its primary focus in on
the interpolation/regression technique known as kriging, which is very
closely related to Splines and Radial Basis Functions, and can be
interpreted as a non-parametric Bayesian method using a Gaussian Process
(GP) prior. The STK also provides tools for the sequential and
non-sequential design of experiments. Even though it is, currently, mostly
geared towards the Design and Analysis of Computer Experiments (DACE), the
STK can be useful for other applications areas (such as Geostatistics,
Machine Learning, Non-parametric Regression, etc.).
Moses is a statistical machine translation system that allows you to
automatically train translation models for any language pair. All you
need is a collection of translated texts (parallel corpus). Once you have a
trained model, an efficient search algorithm quickly finds the highest
probability translation among the exponential number of choices.
WWW: http://www.statmt.org/moses/
Ipopt (Interior Point OPTimizer, pronounced eye-pea-Opt) is a software
package for large-scale nonlinear optimization.
Ipopt is written in C++ and is released as open source code under the
Eclipse Public License (EPL). It is available from the COIN-OR
initiative. The code has been written by Carl Laird and Andreas Wächter,
who is the COIN project leader for Ipopt.
The Ipopt distribution can be used to generate a library that can be
linked to one's own C++, C, or Fortran code, as well as a solver
executable for the AMPL modeling environment. The package includes
interfaces to CUTEr optimization testing environment, as well as the
MATLAB and R programming environments. IPOPT can be used on Linux/UNIX,
Mac OS X and Windows platforms.
An excellent reference for this library can be found in:
Wächter and L. T. Biegler, On the Implementation of a Primal-Dual Interior
Point Filter Line Search Algorithm for Large-Scale Nonlinear Programming,
Mathematical Programming 106(1), pp. 25-57, 2006
WWW: https://projects.coin-or.org/Ipopt
PR: 168290
Submitted by: Pedro F. Giffuni <pfg@FreeBSD.org>
- Remove from devel/Makefile
- Add to math/Makefile
- Update CATEGORIES for both ports
- Add MOVED entries
While I'm here, sort MOVED entries causing MOVEDlint.awk error [1]
after r365599 [2]
[1] 6470: date going backwards from 2014-08-20 to 2014-08-15
[2] https://svnweb.freebsd.org/changeset/ports/365599
Suggested by: vsevolod
PDAL is a BSD licensed library for translating and manipulating
point cloud data of various formats. It is a library that is
analogous to the GDAL raster library. PDAL is focussed on reading,
writing, and translating point cloud data from the ever-growing
constellation of data formats that are being developed for working
with multi-dimensional emitted-pulse scanning systems. While PDAL is
not explicitly limited to working with LiDAR data formats, its
initial rollout is focused in that area.
WWW: http://www.pdal.io/
PR: 192329
Submitted by: coder@tuxfamily.org (maintainer)
MPIR is an open source multiprecision integer (bignum) library forked from the
GMP (GNU Multi Precision) project. It consists of much code from past GMP
releases, in combination with much original contributed code.
MPIR is constructed by a developer and vendor friendly community of
professional and amateur mathematicians, computer scientists and hobbyists.
WWW: http://www.mpir.org
The Helsinki Finite-State Transducer toolkit is intended for processing
natural language morphologies. The toolkit is demonstrated by wide-coverage
implementations of a number of languages of varying morphological complexity.
2014-06-22 www/phpbb-devel: Use www/phpbb3 instead
2014-06-22 math/polymake: Does not build with any supported version of Perl
2014-06-22 www/phpsysinfo-dev: Use www/phpsysinfo instead
This class covers most functionality of UNIDATA's UDUNITS Library, however,
with a more sophisticated handling of string expressions.
UDUNITS always decomposes units into the four base units and discards the
original string expressions. Therefore, 'hPa' always becomes '100
kg.m-1.sec-1', and 'day' always becomes '86400 sec'. On the other hand, this
library tries to keep the original expressions as much as possible by default,
while allowing partial to complete decompositions if needed.
WWW: http://www.gfd-dennou.org/arch/ruby/products/numru-units/
PR: ports/190202
Submitted by: Shin-ya MURAKAMI <murashin@gfd-dennou.org>
The primary motivation for adding why3 is to support the upcoming SPARK
2014 port. However, SPARK 2014 requires a custom version. In time the
customizations should make it upstream, but currently the stock version
cannot be used to build SPARK. They are also licensed differently (LGPL2
for stock, GPLv3 for SPARK version).
Rather than force people that find why3 useful on their own to accept a
custom version, both are offered although they currently conflict.
Why3 has optional dependencies on coq, isabelle, and frama-c, and all
three have issus:
* coq rebuilds its libraries in $LOCALBASE, could be issue with coq
* isabella currently has a broken dependency (sjsml) and only for i386
when it's not. Updating to 2013-2 version failed, as did trying to
build it with polyml instead of sjsml
* frama-c is fine, but the plugin code in why3 is still experimental
and upstream recommends that it not be used.
==============================================================
Why3 is a platform for deductive program verification. It provides a rich
language for specification and programming, called WhyML, and relies on
external theorem provers, both automated and interactive, to discharge
verification conditions. Why3 comes with a standard library of logical
theories (integer and real arithmetic, Boolean operations, sets and maps,
etc.) and basic programming data structures (arrays, queues, hash tables,
etc.). A user can write WhyML programs directly and get correct-by-
construction OCaml programs through an automated extraction mechanism.
WhyML is also used as an intermediate language for the verification of C,
Java, or Ada programs.
Why3 is a complete reimplementation of the former Why platform. Among the
new features are: numerous extensions to the input language, a new
architecture for calling external provers, and a well-designed API,
allowing to use Why3 as a software library. An important emphasis is put
on modularity and genericity, giving the end user a possibility to easily
reuse Why3 formalizations or to add support for a new external prover if
wanted.
This is a new requirement for the latest veersion of alt-ergo.
================================================================
The Zarith library implements arithmetic and logical operations over
arbitrary precision numbers. It uses GMP to efficiently implement
arithmetic over large numbers. Small integers are represented as Caml
unboxed integers for speed and space economy.
WWW: http://forge.ocamlcore.org/projects/zarith
Foma is a compiler, programming language, and C library for constructing
finite-state automata and transducers for various uses. It has specific
support for many natural language processing applications such as producing
morphological analyzers. Although NLP applications are probably the main use
of foma, it is sufficiently generic to use for a large number of purposes.
2014-04-12 net/pvm++: Unmaintained since 2001
2014-04-12 devel/ixlib: Unmaintained since 2001
2014-04-12 mail/althea: Unmaintained since 2001
2014-04-12 graphics/claraocr: Unmaintained since 2001
2014-04-12 graphics/qvplay: Unmaintained since 2001
2014-04-12 print/guitartex: Unmaintained since 2001
2014-04-12 print/pnm2ppa: Unmaintained since 2001
2014-04-12 graphics/opendis: Unmaintained since 2001
2014-04-12 net/gnome-mud: Unmaintained since 2001
2014-04-12 graphics/maverik: Unmaintained since 2001
2014-04-12 biology/rasmol: Unmaintained since 2001
2014-04-12 mail/mail2procmailrc: Unmaintained since 2001
2014-04-12 science/felt: Unmaintained since 2001
2014-04-12 textproc/pardiff: Unmaintained since 2001
2014-04-12 lang/klone: Unmaintained since 2001
2014-04-12 net/rmsg: Unmaintained since 2001
2014-04-12 net/sharity-light: Unmaintained since 2001
2014-04-12 biology/genpak: Unmaintained since 2001
2014-04-12 net/forg: Unmaintained since 2001
2014-04-12 misc/txt2regex: Unmaintained since 2001
2014-04-12 textproc/ipdf: Unmaintained since 2001
2014-04-12 graphics/plotmtv: Unmaintained since 2001
2014-04-12 devel/happydoc: Unmaintained since 2001
2014-04-12 print/cpp2latex: Unmaintained since 2001
2014-04-12 graphics/svg2swf: Unmaintained since 2001
2014-04-12 devel/flick: Unmaintained since 2001
2014-04-12 mail/smail: Unmaintained since 2001
2014-04-12 net/net-http: Unmaintained since 2001
2014-04-12 security/cfv: Unmaintained since 2001
2014-04-12 graphics/camediaplay: Unmaintained since 2001
2014-04-12 math/umatrix: Unmaintained since 2001
2014-03-10 www/p5-CGI-modules: No more public distfiles
2014-04-10 www/p5-WWW-Link: Depends on expired www/p5-CGI-modules
2014-03-10 www/sbox-dtc: No more public distfiles
2014-04-10 sysutils/dtc: Depends on expired www/sbox-dtc
2014-03-10 textproc/glimpse: No more public distfiles
2014-04-10 ftp/ftplocate: Depends on expired textproc/glimpse
2014-04-10 misc/tkman: Depends on expired textproc/glimpse
2014-04-09 devel/asl: Unmaintained since 1997
2014-04-09 net/pcnfsd: Unmaintained since 1997
2014-04-10 cad/chipmunk: Unmaintained since 1999
2014-04-10 graphics/comix: Insists on installing in /usr/local, and uses nautilus2 which is deprecated.
2014-04-10 www/mambo: Broken for more than 6 months
2014-04-10 devel/lua-rds-parser: Broken for more than 6 months
2014-04-10 editors/the: Unmaintained since 1999
2014-04-10 japanese/exmh2: Unmaintained since 1999
2014-04-10 net/freewais-sf: Unmaintained since 1999
2014-04-10 editors/elvis: Unmaintained since 1999
2014-04-10 japanese/sed: Unmaintained since 1999
2014-04-10 x11-fm/xfm: Unmaintained since 1999
2014-04-10 print/rtf2latex: Unmaintained since 1999
2014-04-10 graphics/fbm: Unmaintained since 1999
2014-04-11 devel/p5-Penguin-Easy: Unmaintained since 2000
2014-04-11 emulators/prodosemu: Unmaintained since 2000
2014-04-11 security/gtkportscan: Unmaintained since 2000
2014-04-11 graphics/xmfract: Unmaintained since 2000
2014-04-11 databases/xmbase-grok: Unmaintained since 2000
2014-04-11 emulators/svr4_base: Unmaintained since 2000
2014-04-11 math/freefem: Unmaintained since 2000
2014-04-11 graphics/tiff2png: Unmaintained since 2000
2014-04-11 math/wingz: Unmaintained since 2000
2014-04-11 lang/STk: Unmaintained since 2000
2014-04-11 graphics/kdc2tiff: Unmaintained since 2000
2014-04-11 math/xlispstat: Unmaintained since 2000
2014-04-11 databases/typhoon: Unmaintained since 2000
2014-04-11 graphics/dc20ctrl: Unmaintained since 2000
2014-04-11 www/fhttpd: Unmaintained since 2000
2014-04-11 graphics/xmorph: Unmaintained since 2000
2014-04-11 editors/axe: Unmaintained since 2000
2014-04-11 www/cgic: Unmaintained since 2000
2014-03-27 audio/pysol-sound-server: Broken, abondonware, use pysolfc
2014-03-27 games/pysol-cardsets: Broken, abondonware, use pysolfc
2014-03-27 games/pysol-music: Broken, abondonware, use pysolfc
2014-03-27 games/pysol: Broken, abondonware, use pysolfc
2014-03-28 devel/ros_tutorials: Depends on expiring devel/ros_comm
2014-03-28 math/ros-geometry: Depends on expiring devel/ros_comm
2014-03-28 devel/ros-nxt: Depends on expiring devel/ros_comm
2014-03-28 devel/ros-rx: Depends on expiring devel/ros_comm
2014-03-28 devel/R-cran-vcd: New port without proper maintainer
2014-03-28 devel/ros-documentation: Depends on expiring devel/ros_comm
2014-03-28 devel/ros-common_msgs: Depends on expiring devel/ros_comm
2014-03-28 devel/ros_comm: Broken for more than 6 months
1/2/4-byte Integer, single/double-precision Real/Complex, and Ruby Object. This
extension library incorporates fast calculation and easy manipulation of large
numerical arrays into the Ruby language. NArray has features similar to NumPy,
but NArray has vector and matrix subclasses.
WWW: http://narray.rubyforge.org/
PR: ports/187917
Submitted by: Shin-ya MURAKAMI <murashin@gfd-dennou.org>
The octave-forge package is the result of The GNU Octave Repositry project,
which is intended to be a central location for custom scripts, functions and
extensions for GNU Octave. contains the source for all the functions plus
build and install scripts.
This is divand.
This is a powerful Computer-Algebra System written in it's own version of
LISP with quite a long history behind it.
PR: ports/186855
Submitted by: Pedro Giffuni <giffunip@tutopia.com>
base representation than normal. In base n arithmetic you have n
symbols which have a representation. I was going to call them
"glyphs", but being text strings they are not really. On Tye McQueen's
whimsical suggestion I settled on the name Math::Fleximal, the set of
text representations is called a "flex", and the representation of
individual digits are the "flecks". These names are somewhat
unofficial...
This allows you to do basic arithmetic using whatever digits you want,
and to convert from one to another.
WWW: http://search.cpan.org/dist/Math-Fleximal/
Submitted by: Matthew Seaman <matthew@FreeBSD.org>
It's dedicated to trading software developers requiring to perform technical
analysis of financial market data. Alongside many indicators like ADX, MACD,
RSI, Stochastic, TRIX the candlestick pattern recognition and several vector
arithmetic and algebraic functions are present.
WWW: http://pecl.php.net/package/trader/
PR: ports/186226
Submitted by: Jim Ohlstein <jim@ohlste.in>
adds support for MEX compilation, adds a man page, and improves the user
interface using auto-admin tools.
PR: ports/184607
Submitted by: Jason Bacon <jwbacon (at) tds.net>
The octave-forge package is the result of The GNU Octave Repositry project,
which is intended to be a central location for custom scripts, functions and
extensions for GNU Octave. contains the source for all the functions plus
build and install scripts.
This is image-acquisition.
This is a port of the new VTK 6.x series. It is an early effort which should
be used with care. Python support is present but commented out, pending some
more thorough test.
WWW: http://vtk.org/
The octave-forge package is the result of The GNU Octave Repositry project,
which is intended to be a central location for custom scripts, functions and
extensions for GNU Octave. contains the source for all the functions plus
build and install scripts.
OpenFst is a library for constructing, combining, optimizing, and
searching weighted finite-state transducers (FSTs). Weighted finite-state
transducers are automata where each transition has an input label, an
output label, and a weight. The more familiar finite-state acceptor
is represented as a transducer with each transition's input and output
label equal. Finite-state acceptors are used to represent sets of
strings (specifically, regular or rational sets); finite-state transducers
are used to represent binary relations between pairs of strings
(specifically, rational transductions). The weights can be used to represent
the cost of taking a particular transition.
- Support JIT compilation using Clang/LLVM 3.3.
- Add desktop entry.
- Remove math/freemat-mpi. It has been marked IGNORE for almost 7 years
since the removal of MPI support in FreeMat 3.0.
2013-12-22 devel/ruby-cvs: Broken for more than 6 month
2013-12-22 devel/hs-reactive: Broken for more than 6 month
2013-12-22 databases/rubygem-delayed_job_data_mapper: Broken for more than 6 month
2013-12-22 graphics/xmagv: Broken for more than 6 month
2013-12-22 lang/slib-gauche: Broken for more than 6 month
2013-12-22 graphics/f-spot: Broken for more than 6 month
2013-12-22 sysutils/linux-megamgr: Broken for more than 6 month
2013-12-22 games/linux-savage-samuraiwars: Broken for more than 6 month
2013-12-22 ftp/gftp: Broken for more than 6 month
2013-12-22 devel/hs-DeepArrow: Broken for more than 6 month
2013-12-22 converters/py-svglib: Broken for more than 6 month
2013-12-22 converters/p5-Unicode-Lite: Broken for more than 6 month
2013-12-22 mail/squirrelmail-calendar_sql_backend-plugin: Broken for more than 6 month
2013-12-22 finance/quantlib: Broken for more than 6 month
2013-12-22 games/xkobo: Broken for more than 6 month
2013-12-22 games/quake3-rq3: Broken for more than 6 month
2013-12-22 math/fbm: No new release since 2004, new supported upstream
Fastcluster provides Python functions for hierarchical clustering. It generates
hierarchical clusters from distance matrices or from vector data.
Part of this module is intended to replace the functions
linkage, single, complete, average, weighted, centroid, median, ward
in the module scipy.cluster.hierarchy with the same functionality but much
faster algorithms. Moreover, the function 'linkage_vector' provides
memory-efficient clustering for vector data.
The interface is very similar to MATLAB's Statistics Toolbox API to make code
easier to port from MATLAB to Python/Numpy. The core implementation of this
library is in C++ for efficiency.
WWW: http://danifold.net/fastcluster.html
PR: ports/184931
Submitted by: Johannes Jost Meixner <xmj chaot.net>
Mate is a lite desktop forked from gnome2.
Most of the work is done by Jeremy Messenger (mezz@). The only thing I did
was update a few ports to later 1.6 release and attempting to keep up with
ports infra changes. Resulting bugs are all mine.
Mate is a sort of replacement for Gnome 2. So people wanting to keep a
Gnome 2 like desktop should switch. Gnome 2 will be replaced by Gnome 3
in the near future. This switch will be announce with a transition time
so people have more time to switch if they haven't already.
This release was made possible by everyone that send friendly pokes to
keep mate on my mind.
Approved by: portmgr (bapt)
Statsmodels is a Python package that provides a complement to scipy for
statistical computations including descriptive statistics and estimation and
inference for statistical models.
Main Features:
* linear regression models: GLS (including WLS and LS aith AR errors) and OLS.
* glm: Generalized linear models with support for all of the one-parameter
exponential family distributions.
* discrete: regression with discrete dependent variables, including Logit,
Probit, MNLogit, Poisson, based on maximum likelihood estimators
* rlm: Robust linear models with support for several M-estimators.
* tsa: models for time series analysis - univariate: AR, ARIMA; multivariate:
VAR and structural VAR
* nonparametric: (Univariate) kernel density estimators
* datasets: Datasets to be distributed and used for examples and in testing.
* stats: a wide range of statistical tests, diagnostics and specification tests
* iolib: Tools for reading Stata .dta files into numpy arrays, printing table
output to ascii, latex, and html
* miscellaneous models
* sandbox: statsmodels contains a sandbox folder with code in various stages of
* developement and testing which is not considered "production ready", including
Mixed models, GARCH and GMM estimators, kernel regression, panel data models.
WWW: https://www.github.com/statsmodels/statsmodels
PR: ports/183932
Submitted by: Johannes Jost Meixner <xmj chaot.net>
Patsy is a Python library for describing statistical models (especially linear
models, or models that have a linear component) and building design matrices.
Patsy brings the convenience of R "formulas" to Python.
WWW: https://www.github.com/pydata/patsy
PR: ports/183870
Submitted by: Johannes Jost Meixner <xmj chaot.net>
linear models (state space models).
Includes functions for Kalman filtering and smoothing.
Estimation of variance matrices can be performed using
the EM algorithm in case of Gaussian models.
WWW: http://cran.r-project.org/web/packages/sspir/
The octave-forge package is the result of The GNU Octave Repositry project,
which is intended to be a central location for custom scripts, functions and
extensions for GNU Octave. contains the source for all the functions plus
build and install scripts.
This is ltfat.
The Large Time/Frequency Analysis Toolbox (LTFAT) is a Matlab/Octave toolbox
for working with time-frequency analysis, wavelets and signal processing. It
is intended both as an educational and a computational tool. The toolbox
provides a large number of linear transforms including Gabor and wavelet
transforms along with routines for constructing windows (filter prototypes)
and routines for manipulating coefficients.
2013-08-27 lang/ldc-devel: Broken for more than 6 month
2013-08-27 www/mod_smooth_streaming: Broken for more than 6 month
2013-08-27 www/p5-Apache2-Scoreboard: Broken for more than 6 month
2013-08-27 sysutils/avfs: Broken for more than 6 month
2013-08-27 multimedia/mp4split: Broken for more than 6 month
2013-08-27 net-mgmt/noc: Broken for more than 6 month
2013-08-27 sysutils/empower: Broken for more than 6 month
2013-08-27 emulators/xgngeo: Broken for more than 6 month
2013-08-27 graphics/geglmm: Broken for more than 6 month
2013-08-27 sysutils/libumberlog: Broken for more than 6 month
2013-08-27 net/wizd: Broken for more than 6 month
2013-08-27 net-p2p/nicotine-plus: Broken for more than 6 month
2013-08-27 palm/barry: Broken for more than 6 month
2013-08-27 x11-themes/kde-icons-noia-warm: Broken for more than 6 month
2013-08-27 news/lottanzb: Broken for more than 6 month
2013-08-27 textproc/xaira: Broken for more than 6 month
2013-08-27 graphics/f90gl: Broken for more than 6 month
2013-08-27 multimedia/linux-gspca-kmod: Broken for more than 6 month
2013-08-27 x11/cl-clx-sbcl: Broken for more than 6 month
2013-08-27 math/dislin: Broken for more than 6 month
2013-08-27 irc/smuxi: Broken for more than 6 month
The octave-forge package is the result of The GNU Octave Repositry project,
which is intended to be a central location for custom scripts, functions and
extensions for GNU Octave. contains the source for all the functions plus
build and install scripts.
This is netcdf: A MATLAB compatible NetCDF interface for Octave.
GKmap is a free K-Map disclosure software, which is developed to solve
the Digital Electronics design problems. Along with design it also helps
in analysis of information flow in the digital circuits.
WWW: http://sourceforge.net/projects/gkmap/
PR: ports/180981
Submitted by: Javad Kouhi <javad.kouhi gmail.com>
ent applies various tests to sequences of bytes stored in files and reports the
results of those tests. The program is useful for evaluating pseudorandom
number generators for encryption and statistical sampling applications,
compression algorithms, and other applications where the information density of
a file is of interest.
WWW: http://www.fourmilab.ch/random/
PR: ports/180899
Submitted by: Horia Racoviceanu <horia@racoviceanu.com>
Unfortunately, this also affects some ports using QT3 as a GUI toolkit.
Changes to infrastructure files:
- bsd.kde.mk : obsolete, remove
- bsd.qt.mk : note that a CONFLICTS_BUILD line can probably go after a while
- CHANGES : document the removals from bsd.port.mk
- KNOBS : remove KDE and QT (KDE4 and QT4 should be used instead)
- MOVED : add the removed ports
PR: ports/180745
Submitted by: rene
Approved by: portmgr (bapt)
Exp-run by: bapt
Z-polyhedra. That is, it finds a code (e.g. in C, FORTRAN...) that
reaches each integral point of one or more parameterized polyhedra.
CLooG has been originally written to solve the code generation problem
for optimizing compilers based on the polytope model.
WWW: http://www.cloog.org/
PR: ports/177418
Submitted by: Danielo Egea Gondolfo <danilogondolfo@gmail.com>
and an installer script matlab-2012a-installer, which automates the somewhat
tricky process of installing Linux Matlab.
It requires installation media and a license file from Mathworks, Inc.
PR: ports/177724
Submitted by: Jason Bacon
Maximum likelihood estimation of the parameters of a fractionally
differenced ARIMA(p,d,q) model (Haslett and Raftery, Appl.Statistics,
1989).
WWW: http://cran.r-project.org/web/packages/fracdiff/
Methods and tools for displaying and analysing univariate time
series forecasts including exponential smoothing via state space
models and automatic ARIMA modelling.
WWW: http://cran.r-project.org/web/packages/forecast/
There is an existing port (finance/gss) with possible distfile conflict however
upstream is not actively maintained and CRAN packages have a slightly different
naming scheme making a future distfiles conflict unlikely.
Approved by: eadler,bdrewery (mentors, implicit)
good balance between speed and ease of use. The syntax is deliberately
similar to Matlab.
Integer, floating point and complex numbers are supported, as well as a
subset of trigonometric and statistics functions. Various matrix
decompositions are provided through optional integration with LAPACK, or
one of its high performance drop-in replacements (such as the
multi-threaded MKL or ACML libraries).
A delayed evaluation approach is employed (at compile-time) to combine
several operations into one and reduce (or eliminate) the need for
temporaries. This is accomplished through recursive templates and template
meta-programming.
Useful for conversion of research code into production environments, or if
C++ has been decided as the language of choice, due to speed and/or
integration capabilities.
WWW: http://arma.sourceforge.net/
PR: ports/177166
Submitted by: Pedro Giffuni <giffunip@tutopia.com>
This port contains data and baseline images for VTK regression testing
and other VTK examples. The Data directory are data files of various
types. This includes polygonal data, images, volumes, structured grids,
rectilinear grids, and multi-variate data.
The Baseline are the testing images. These are used in testing to compare
a valid image against a generated image. If a difference between the two
images is found, then the test is considered to have failed.
WWW: http://www.vtk.org/
union, difference and xor) on polygons in 2D space. There are no
restrictions on either the number nor the type of polygon that can be
clipped. They can have holes, be self-intersecting and even have coincident
edges. The library also performs polygon offsetting
WWW: http://www.angusj.com/delphi/clipper.php
PR: ports/175845
Submitted by: Martin Dieringer <martin.dieringer@gmx.de>
graphics/py-visual||2013-02-06|Has expired: Depends on the expired x11-toolkits/gtkglarea [1]
math/gnuplot+||2013-02-06|Upstream says: This package is obsolete. The author does not recommend to use it
science/vis5d+||2013-02-06|No new release since 2001, depends on expired x11-toolkits/gtkglarea [2]
Approved by: stephen [1],
nivit [2]
The octave-forge package is the result of The GNU Octave Repositry project,
which is intended to be a central location for custom scripts, functions and
extensions for GNU Octave. contains the source for all the functions plus
build and install scripts.
This is database: interface to SQL databases, currently only postgresql using
libpq.
A collection and description of functions to compute density,
distribution and quantile function and to generate random variates
of the stable distribution.
WWW: http://cran.r-project.org/web/packages/stabledist/
PR: ports/172298 (based on)
Submitted by: David Naylor <naylor.b.david_AT_gmail_DOT_com>
This routine implements the dual method of Goldfarb and Idnani
(1982, 1983) for solving quadratic programming problems of the form
min(?dT b + 1/2bT Db) with the constraints AT b >= b0.
WWW: http://cran.r-project.org/web/packages/quadprog/
PR: ports/172298 (based on)
Submitted by: David Naylor <naylor.b.david_AT_gmail_DOT_com>
Simulations and estimations of discrete, univariate or multivariate
gaussian, mixture of univariate or multivariate gaussian hidden
Markov models.
WWW: http://r-forge.r-project.org/projects/rhmm/
Feature safe: yes
2012-11-26 games/stepbill: No more public distfiles
2012-11-26 deskutils/ktagebuch: No more public distfiles
2012-11-26 games/jetpack: No more public distfiles
2012-11-26 games/tremor: No more public distfiles
2012-11-26 graphics/jpeg2pdf: No more public distfiles
2012-11-26 java/westhawksnmp: No more public distfiles
2012-11-26 japanese/tcl76: No more public distfiles
2012-11-26 math/stepulator: No more public distfiles
2012-11-26 editors/jedit-devel: Stable version is more recent than devel
2012-11-26 www/trac-wikirename: Functionality of this plugin is included in the Trac core since 0.12
Feature safe: yes
2012-11-27 devel/jakarta-commons-chain: Depends on the expired devel/portlet-api
2012-11-27 math/p5-Math-LinearCombination: Depends on the expired p5-Class-Field
2012-11-26 x11/padkey: No more public distfiles
2012-11-26 japanese/gicq: No more public distfiles and development ceased
2012-11-26 www/momspider: No more public distfiles
2012-11-26 japanese/perl5: Recent perl supports correctly japanese, consider using them
2012-11-26 sysutils/fuser: No more public distfiles
2012-11-26 textproc/ascii2pdf: No more public distfiles
Feature safe: yes
LearnBayes contains a collection of functions helpful in learning
the basic tenets of Bayesian statistical inference. It contains
functions for summarizing basic one and two parameter posterior
distributions and predictive distributions. It contains MCMC
algorithms for summarizing posterior distributions defined by the
user. It also contains functions for regression models, hierarchical
models, Bayesian tests, and illustrations of Gibbs sampling.
WWW: http://cran.r-project.org/web/packages/LearnBayes/
Feature safe: yes
The octave-forge package is the result of The GNU Octave Repositry project,
which is intended to be a central location for custom scripts, functions
and extensions for GNU Octave. contains the source for all the functions
plus build and install scripts.
This is cgi, which provides a common gatway interface for Octave.
Feature safe: yes
This package contains functions to perform Bayesian inference using
posterior simulation for a number of statistical models. Most
simulation is done in compiled C++ written in the Scythe Statistical
Library Version 1.0.3. All models return coda mcmc objects that can
then be summarized using the coda package. MCMCpack also contains
some useful utility functions, including some additional density
functions and pseudo-random number generators for statistical
distributions, a general purpose Metropolis sampling algorithm, and
tools for visualization.
WWW: http://cran.r-project.org/web/packages/MCMCpack/
Feature safe: yes
OpenBLAS is an optimized BLAS library based on GotoBLAS2 1.13 BSD version.
OpenBLAS is an open source project supported by
Lab of Parallel Software and Computational Science, ISCAS.
NOTE: If you want to specify your CPU microarchitecture manually,
please use TARGET_CPU_ARCH knob, e.g., "make TARGET_CPU_ARCH=NEHALEM".
This value is set TARGET build flag.
WWW: https://github.com/xianyi/OpenBLAS
PR: 165684
Submitted by: Eijiro Shibusawa <phd_kimberlite@yahoo.co.jp>
The octave-forge package is the result of The GNU Octave Repositry project,
which is intended to be a central location for custom scripts, functions and
extensions for GNU Octave. contains the source for all the functions plus
build and install scripts.
This is lssa.
A package implementing tools to compute spectral decompositions of
irregularly-spaced time series. Currently includes functions based off the
Lomb-Scargle periodogram and Adolf Mathias' implementation for R and C (see
http://www.jstatsoft.org/v11/i02).
WWW: http://octave.sourceforge.net/
graphics software based on the OpenGL Shading Language (GLSL) specification.
GLM provides classes and functions designed and implemented with the same
naming conventions and functionalities than GLSL so that when a programmer
knows GLSL, he knows GLM as well which makes it really easy to use.
modelling, fitting, analysis and forecasting of Generalized Dynamic Linear
Models (DLMs). It includes functions to name and extract individual components
of a DLM, build classical seasonal time-series models (monthly, quarterly,
yearly, etc. with calendar adjustments) and provides a unified interface
compatible with other state-space packages including: dlm, FKF and KFAS.
WWW: http://cran.r-project.org/web/packages/dlmodeler/
PR: 170069
Submitted by: Cyrille Szymanski <cnszym@gmail.com>
The octave-forge package is the result of The GNU Octave Repositry project,
which is intended to be a central location for custom scripts, functions and
extensions for GNU Octave. contains the source for all the functions plus
build and install scripts.
This is ncarray.
Access a single or a collection of NetCDF files as a multi-dimensional array.
CONFLICTS, LATEST_LINK, and PORTSCOUT; adjust dependent ports; explicitly
note the restrictive license of the metis ports (while here, append the MPI port to
*DEPENDS in math/parmetis, rather than using an assignment)
PR: 169578
Math::GMPz is a bignum module utilising the GNU MP (GMP) library. Basically this
module simply wraps all of the mpz integer functions provided by that library.
See the Math::GMPz test suite for some examples of usage.
WWW: http://search.cpan.org/dist/Math-GMPz/
Math::GMPq is a bigrational module utilising the GNU MP (GMP) library. Basically
this module simply wraps all of the mpq rational functions provided by that
library. See the Math::GMPq test suite for some examples of usage.
IMPORTANT:
If your perl was built with '-Duse64bitint' you need to assign all integers
larger than 52-bit in a 'use integer;' block. Failure to do so can result in the
creation of the variable as an NV (rather than an IV) - with a resultant loss of
precision.
WWW: http://search.cpan.org/dist/Math-GMPq/
Math::GMPf is a bigfloat module utilising the GNU MP (GMP) library. Basically
this module simply wraps all of the mpf floating point functions provided by
that library. See the Math::GMPf test suite for some examples of usage.
WWW: http://search.cpan.org/dist/Math-GMPf/
The octave-forge package is the result of The GNU Octave Repositry project,
which is intended to be a central location for custom scripts, functions and
extensions for GNU Octave. contains the source for all the functions plus
build and install scripts.
This is java, and provides a Java interface with OO-like Java objects
manipulation.
Please note that port revision for all the Haskell ports without version changes
are also bumped. Other per-port updates are coming soon (in separate commits)!
In addition to that, separate -docs ports are no longer needed so they are
now removed.
Thanks ashish@ for the assistance.
Obtained from: FreeBSD Haskell
statistics components addressing the most common problems not available in the
Java programming language or Commons Lang.
WWW: http://jakarta.apache.org/commons/math/
PR: ports/166398
Submitted by: Muhammad Moinur Rahmanh <5u623l20@gmail.com>
2012-05-10 archivers/php4-zlib: php4 is EOLed
2012-05-10 converters/php4-iconv: php4 is EOLed
2012-05-10 converters/php4-mbstring: php4 is EOLed
2012-05-10 converters/php4-recode: php4 is EOLed
2012-05-10 databases/php4-dba: php4 is EOLed
2012-05-10 databases/php4-dbase: php4 is EOLed
2012-05-10 databases/php4-dbx: php4 is EOLed
2012-05-10 databases/php4-filepro: php4 is EOLed
2012-05-10 databases/php4-interbase: php4 is EOLed
2012-05-10 databases/php4-mssql: php4 is EOLed
2012-05-10 databases/php4-mysql: php4 is EOLed
2012-05-10 databases/php4-odbc: php4 is EOLed
2012-05-10 databases/php4-oracle: php4 is EOLed
2012-05-10 databases/php4-pgsql: php4 is EOLed
databases/php4-rrdtool: php4 is EOLed
2012-05-10 databases/php4-sybase_ct: php4 is EOLed
2012-05-10 devel/php4-dio: php4 is EOLed
2012-05-10 devel/php4-gettext: php4 is EOLed
2012-05-10 devel/php4-mcve: php4 is EOLed
2012-05-10 devel/php4-ncurses: php4 is EOLed
2012-05-10 devel/php4-pcntl: php4 is EOLed
2012-05-10 devel/php4-pcre: php4 is EOLed
2012-05-10 devel/php4-readline: php4 is EOLed
2012-05-10 devel/php4-shmop: php4 is EOLed
2012-05-10 devel/php4-sysvmsg: php4 is EOLed
2012-05-10 devel/php4-sysvsem: php4 is EOLed
2012-05-10 devel/php4-sysvshm: php4 is EOLed
2012-05-10 devel/php4-tokenizer: php4 is EOLed
2012-05-10 finance/php4-pfpro: php4 is EOLed
2012-05-10 ftp/php4-curl: php4 is EOLed
2012-05-10 ftp/php4-ftp: php4 is EOLed
2012-05-10 graphics/php4-chartdirector: php4 is EOLed
2012-05-10 graphics/php4-exif: php4 is EOLed
2012-05-10 graphics/php4-gd: php4 is EOLed
lang/php4: php4 is EOLed
2012-05-10 lang/php4-extensions: php4 is EOLed
2012-05-10 lang/php4-overload: php4 is EOLed
2012-05-10 mail/php4-imap: php4 is EOLed
2012-05-10 math/php4-bcmath: php4 is EOLed
2012-05-10 math/php4-gmp: php4 is EOLed
2012-05-10 misc/php4-calendar: php4 is EOLed
2012-05-10 misc/php4-mcal: php4 is EOLed
2012-05-10 net/php4-ldap: php4 is EOLed
2012-05-10 net/php4-sockets: php4 is EOLed
2012-05-10 net/php4-xmlrpc: php4 is EOLed
2012-05-10 net/php4-yp: php4 is EOLed
2012-05-10 net-mgmt/php4-snmp: php4 is EOLed
2012-05-10 security/php4-crack: php4 is EOLed
2012-05-10 security/php4-mcrypt: php4 is EOLed
2012-05-10 security/php4-mhash: php4 is EOLed
2012-05-10 security/php4-openssl: php4 is EOLed
2012-05-10 sysutils/php4-posix: php4 is EOLed
2012-05-10 textproc/php4-ctype: php4 is EOLed
2012-05-10 textproc/php4-domxml: php4 is EOLed
2012-05-10 textproc/php4-pspell: php4 is EOLed
2012-05-10 textproc/php4-wddx: php4 is EOLed
2012-05-10 textproc/php4-xml: php4 is EOLed
2012-05-10 textproc/php4-xslt: php4 is EOLed
2012-05-10 www/php4-session: php4 is EOLed
2012-05-10 archivers/pecl-zip: php4 is EOLed
2012-05-10 databases/pecl-sqlite: php4 is EOLed
2012-05-11 devel/pear-XML_XPath: php4 is EOLed
2012-05-11 devel/pecl-json: php4 is EOLed
2012-05-10 www/pecl-tidy: php4 is EOLed
2012-05-10 www/php-dyn: php4 is EOLed
2012-05-11 security/pecl-hash: php4 is EOLed
2012-05-11 net/phpldapadmin098: php4 is EOLed
graphics/jpgraph: php4 is EOLed
Implements a number of axis labeling schemes, including those
compared in An Extension of Wilkinson's Algorithm for Positioning
Tick Labels on Axes by Talbot, Lin, and Hanrahan, InfoVis 2010.
WWW: http://cran.r-project.org/web/packages/labeling/
Viper is a minimalistic scientific plotter and run-time visualization module.
Viper has support for visualizing meshes and solutions in DOLFIN.
WWW: https://launchpad.net/fenics-viper
PR: ports/166913
Submitted by: jwbacon@tds.net
The Unified Form Language (UFL) is a domain specific language for declaration
of finite element discretizations of variational forms.
WWW: https://launchpad.net/ufl
PR: ports/166911
Submitted by: jwbacon@tds.net
The FInite element Automatic Tabulator FIAT supports generation of arbitrary
order instances of the Lagrange elements on lines, triangles, and tetrahedra.
WWW: https://launchpad.net/fiat
PR: ports/166910
Submitted by: jwbacon@tds.net
the evaluation of a multilinear form given in mathematical notation.
WWW: https://launchpad.net/ffc
PR: 166700
Submitted by: Jason Bacon <jwbacon@tds.net>
gnuplot to produce fig output and then mangle it to fill in the bars. Any number
of clustered datasets are supported, as well as automatic averaging and other
features.
WWW: http://www.burningcutlery.com/derek/bargraph/
PR: ports/166410
Submitted by: Dereckson <dereckson@gmail.com>
Approved by: wen@ (co-mentor)
Feature safe: yes
- add and update URLs of MASTER_SITES
- update author's email address
- use @dirrmtry
- change port category from math to science.
- Completes repo copy from math/ruby-netcdf -> science/ruby-netcdf
PR: ports/165314
Submitted by: Shin-ya Murakami <murashin@gfd-dennou.org>
Carve is a C++ library designed to perform boolean operations between two
arbitrary polygonal meshes. The standard union and intersection operations
are supported, as are symmetric and asymmetric difference. It is also
possible to implement custom operations using Carve, allowing results to be
formed from any combination of inputs.
Carve supports a variety of inputs, including both closed and open surfaces,
faces with arbitrary edge counts and datasets with multiple disjoint,
embedded or touching surfaces. Carve can also interpolate arbitrary values
across faces, meaning that CSG operations need not discard colour, texture
coordinates or other data.
WWW: http://code.google.com/p/carve/
Package KFAS provides funchtions for Kalman filtering, state,
disturbance and simulation smoothing, forecasting and simulation
of state space models. All functions can use exact diffuse
initialisation when distributions of some or all elements of initial
state vector are unknown. Filtering, state smoothing and simulation
functions use sequential processing algorithm, which is faster than
standard approach, and it also allows singularity of prediction
error variance matrix. KFAS also contains function for computing
the likelihood of exponential family state space models and function
for state smoothing of exponential family state space models.
WWW: http://cran.r-project.org/web/packages/KFAS/
