- While here: move knobs to their expected location, remove useless check
for ${PORT_OPTIONS:MDOCS} when installing documentation, standardize
Makefile headers
- Blixem bug fix in sorting features, RT 473624
- Compilation of the seqtools in parallel, RT 467905
- Fix bug with sorting by similarity/identity to first sequence (RT:473624)
- Fix an error compiling with multiple threads (RT:467905)
downside to having this set is that portscout cannot find new releases
when the username changes (which happens often in large projects with
multiple maintainers).
BCFtools is a set of utilities that manipulate variant calls in the
Variant Call Format (VCF) and its binary counterpart BCF. All
commands work transparently with both VCFs and BCFs, both
uncompressed and BGZF-compressed.
WWW: http://www.htslib.org/
PR: 199747
Submitted by: cartwright@asu.edu
- Replace ${MASTER_SITE_FOO} with FOO.
- Merge MASTER_SITE_SUBDIR into MASTER_SITES when possible. (This means 99.9%
of the time.)
- Remove occurrences of MASTER_SITE_LOCAL when no subdirectory was present and
no hint of what it should be was present.
- Fix some logic.
- And generally, make things more simple and easy to understand.
While there, add magic values to the FESTIVAL, GENTOO, GIMP, GNUPG, QT and
SAMBA macros.
Also, replace some EXTRACT_SUFX occurences with USES=tar:*.
Checked by: make fetch-urlall-list
With hat: portmgr
Sponsored by: Absolight
When appropriate:
- Try to use DISTVERSION{SUF,PRE}FIX
- Replace PORTNAME-PORTVERSION by DISTNAME
- Convert MASTER_SITES to use macros
- Other light cleanup
With hat: portmgr
Sponsored by: Absolight
While here:
Regenerate p5-AcePerl's patches using makepatch.
Make p5-Bio-ASN1-EntrezGene depend on p5-bioperl, instead of the
other way around. Bump PORTREVISION on those two ports.
Blixem
- Added functionality to shift-select a range of coordinates,
and copy the reference/match sequence for that range.
- DNA search now highlights the resultant range of coordinates.
- Added a splitter bar to allow the variations track to be resized.
- Dotter
Fix a crash pressing Esc on an undocked alignment or greyramp tool.
- All
Code reorganisation: the codebase is now in C++ rather than C,
and a new module 'gbtools' has been created for generic
utility functions.
The distfile was rerolled but nobody knows why (not a good sign). The
maintainer has added a new MASTER_SITE with the original distfile in
order to unbreak fetch.
PR: 199474
Submitted by: maintainer (Jason Bacon)
The second MASTER_SITES entry worked fine, so this must have been a
transient fetch problem. I removed the first entry which is still
failing though.
Approved by: blanket
As noted by previous commit, upstream rerolls the same distfile
frequently. When FreeBSD cache was removed, the port broke. I'm fixing
it again with a new digest, but I'm also defining DIST_SUBDIR, which is
the correct thing to do with rerolls-by-policy.
Also I removed the bad backup MASTER_SITES and tested in poudriere.
While here, reset the port. The last time the maintainer was seen was
in 2005, when the port was created. Also, rewrap the package description
such that it keeps within 75 characters; also move the url so it won't
wrap across lines.
Simplify gnustep ports
Hook into the regular ports framework:
- LIB_DEPENDS for library dependencies
- Use regular USE_LDCONFIG
Reuse USES=objc (automatic)
USE_GNUSTEP is now a macro to set the dependencies and build feature needed.
Accepted arguments: back base build gui
Merge deskutils/preferencepanes into deskutils/systempreferences
