.. |
ariadne
|
6 ports categories: Remove $PTHREAD_LIBS
|
2015-03-24 16:01:21 +00:00 |
artemis
|
- Add empty directory to plist
|
2015-03-11 14:41:53 +00:00 |
avida
|
Cleanup plist
|
2014-12-20 17:27:08 +00:00 |
babel
|
Rename biology/ patch-xy patches to reflect the files they modify.
|
2014-07-28 14:22:16 +00:00 |
biococoa
|
MASTER_SITES cleanup.
|
2015-05-14 10:15:04 +00:00 |
biojava
|
- add stage support
|
2014-06-01 10:37:22 +00:00 |
blat
|
Update to upstream version 36
|
2015-01-01 18:17:53 +00:00 |
chemeq
|
|
|
clustalw
|
MASTER_SITES cleanup.
|
2015-05-14 10:15:04 +00:00 |
consed
|
${ENV} does not exist, it is called ${SETENV}.
|
2015-04-13 14:49:37 +00:00 |
crux
|
Cleanup plist
|
2014-10-20 07:10:48 +00:00 |
emboss
|
Fix packaging as a user (pkg already takes care of credentials)
|
2015-03-18 21:52:19 +00:00 |
fasta
|
|
|
fasta3
|
- Update to 36.3.7a
|
2015-05-07 02:33:57 +00:00 |
fastdnaml
|
Cleanup plist
|
2014-10-20 07:10:48 +00:00 |
fluctuate
|
|
|
garlic
|
Cleanup plist
|
2014-10-20 07:10:48 +00:00 |
gff2ps
|
|
|
gmap
|
Fix MASTER_SITES
|
2014-09-05 09:25:45 +00:00 |
gperiodic
|
|
|
grappa
|
|
|
hmmer
|
- Remove deprecated option
|
2015-04-02 15:41:31 +00:00 |
htslib
|
Update ports in the [bcd]* categories to not use GH_COMMIT.
|
2015-05-06 15:16:53 +00:00 |
iolib
|
- Update to 1.13.10
|
2015-03-04 13:17:46 +00:00 |
jalview
|
Cleanup plist
|
2014-10-20 07:10:48 +00:00 |
lagan
|
|
|
lamarc
|
|
|
libsbml
|
- Update to 5.11.4
|
2015-05-12 08:58:14 +00:00 |
linux-foldingathome
|
Cleanup plist
|
2014-12-20 17:27:08 +00:00 |
mafft
|
6 ports categories: Remove $PTHREAD_LIBS
|
2015-03-24 16:01:21 +00:00 |
mapm3
|
|
|
migrate
|
- Update to 3.6.9 and unbreak
|
2015-05-18 00:24:33 +00:00 |
molden
|
Update the default version of GCC in the Ports Collection from GCC 4.7.4
|
2014-09-10 20:50:31 +00:00 |
mopac
|
- Upadate biology/mopac to version 1.15
|
2014-12-16 22:10:23 +00:00 |
mrbayes
|
Fix build on -current by un-clobbering LDFLAGS. Also, don't
|
2014-08-15 16:37:37 +00:00 |
mummer
|
Cleanup plist
|
2014-10-20 07:10:48 +00:00 |
muscle
|
Update to 3.8.31.
|
2014-06-17 21:36:06 +00:00 |
ncbi-blast+
|
- Unbreak
|
2015-05-04 06:08:59 +00:00 |
ncbi-toolkit
|
Cleanup plist
|
2014-10-20 07:10:48 +00:00 |
njplot
|
Mark as broken unfetchable ports
|
2015-04-05 17:55:35 +00:00 |
ortep3
|
Mark as broken unfetchable ports
|
2015-04-05 17:55:35 +00:00 |
p5-AcePerl
|
Reassign biology/ perl modules to perl@.
|
2015-05-08 18:12:36 +00:00 |
p5-Bio-ASN1-EntrezGene
|
Reassign biology/ perl modules to perl@.
|
2015-05-08 18:12:36 +00:00 |
p5-Bio-Das
|
Change the way Perl modules are installed, update the default Perl to 5.18.
|
2014-11-26 13:08:24 +00:00 |
p5-Bio-Das-Lite
|
Remove TEST dependency on p5-Test-Simple when the version in core is
|
2015-02-26 16:54:41 +00:00 |
p5-Bio-GFF3
|
Change the way Perl modules are installed, update the default Perl to 5.18.
|
2014-11-26 13:08:24 +00:00 |
p5-Bio-Glite
|
Change the way Perl modules are installed, update the default Perl to 5.18.
|
2014-11-26 13:08:24 +00:00 |
p5-Bio-Graphics
|
Some OCD cleanups on some of the perl@ ports.
|
2015-03-12 23:00:02 +00:00 |
p5-Bio-MAGETAB
|
Some OCD cleanups on some of the perl@ ports.
|
2015-03-12 23:00:02 +00:00 |
p5-Bio-NEXUS
|
Change the way Perl modules are installed, update the default Perl to 5.18.
|
2014-11-26 13:08:24 +00:00 |
p5-Bio-Phylo
|
- Update to 0.58
|
2014-12-07 04:41:47 +00:00 |
p5-Bio-SCF
|
Change the way Perl modules are installed, update the default Perl to 5.18.
|
2014-11-26 13:08:24 +00:00 |
p5-bioperl
|
Reassign biology/ perl modules to perl@.
|
2015-05-08 18:12:36 +00:00 |
p5-bioperl-run
|
For the new USE_GITHUB with only GH_TAGNAME set default DISTNAME to
|
2015-03-20 20:07:50 +00:00 |
paml
|
Update biology/paml to 4.8a and unbreak.
|
2015-04-10 15:39:01 +00:00 |
phrap
|
- Fix various distinfo errors
|
2014-10-16 08:55:30 +00:00 |
phred
|
update ports:
|
2014-08-23 18:04:58 +00:00 |
phylip
|
- Update to version 3.696
|
2014-11-02 14:13:59 +00:00 |
phyml
|
Convert to USES=autoreconf
|
2014-12-28 19:14:13 +00:00 |
platon
|
biology/platon: Upgrade from 05 MAR 2015 => 30 MAR 2015 to unbreak
|
2015-04-11 15:41:22 +00:00 |
plink
|
Update the default version of GCC in the Ports Collection from GCC 4.7.4
|
2014-09-10 20:50:31 +00:00 |
plinkseq
|
- Update to 0.10
|
2014-10-12 03:16:10 +00:00 |
povchem
|
Mark as broken unfetchable ports
|
2015-04-05 17:55:35 +00:00 |
primer3
|
Quote ${CC} and similar variables in MAKE_ARGS.
|
2014-05-20 19:32:39 +00:00 |
protomol
|
Cleanup DIST* variables.
|
2015-05-11 18:34:57 +00:00 |
psi88
|
Update the default version of GCC in the Ports Collection from GCC 4.7.4
|
2014-09-10 20:50:31 +00:00 |
py-biopython
|
biology/py-biopython:
|
2015-01-19 20:21:12 +00:00 |
pycogent
|
- Convert ports from benchmarks/ and biology/ to new USES=python
|
2014-10-19 07:38:11 +00:00 |
pyfasta
|
- Convert ports from benchmarks/ and biology/ to new USES=python
|
2014-10-19 07:38:11 +00:00 |
python-nexus
|
- Convert ports from benchmarks/ and biology/ to new USES=python
|
2014-10-19 07:38:11 +00:00 |
recombine
|
|
|
ruby-bio
|
biology/ruby-bio: mark broken with ruby 2.2
|
2015-04-03 13:50:38 +00:00 |
samtools
|
Update ports in the [bcd]* categories to not use GH_COMMIT.
|
2015-05-06 15:16:53 +00:00 |
seaview
|
biology/seaview: Update version 4.5.4=>4.5.4.4
|
2015-05-22 11:09:23 +00:00 |
seqan
|
biology/segan: Limit GCC to 4.8 while waiting for update
|
2015-03-21 11:53:27 +00:00 |
seqio
|
|
|
seqtools
|
biology/seqtools: 4.33 -> 4.34.1
|
2015-05-06 20:30:53 +00:00 |
sim4
|
|
|
ssaha
|
Cleanup plist
|
2014-12-20 17:27:08 +00:00 |
t_coffee
|
MASTER_SITES cleanup.
|
2015-05-14 10:15:04 +00:00 |
tinker
|
- Update to 7.1.3
|
2015-05-18 01:27:46 +00:00 |
treepuzzle
|
|
|
treeviewx
|
Update the default version of GCC in the Ports Collection from GCC 4.7.4
|
2014-09-10 20:50:31 +00:00 |
tRNAscan-SE
|
Convert a bunch of EXTRACT_SUFX=... into USES=tar:...
|
2014-07-29 19:11:51 +00:00 |
ugene
|
- Update to version 1.16.1
|
2015-03-23 01:44:43 +00:00 |
velvet
|
Designatate 4 ports as unsafe for parallel building
|
2015-01-19 17:43:57 +00:00 |
wise
|
Cleanup plist
|
2014-12-20 17:27:08 +00:00 |
xmolwt
|
devel/glib12 x11-toolkits/gtk12:
|
2014-09-13 15:11:27 +00:00 |
Makefile
|
Remove expired ports:
|
2015-01-01 01:13:11 +00:00 |