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Author SHA1 Message Date
Boris Samorodov
a4c819f709 . add license (GPLv2); 
. bump PORTREVISION;
. NOPORTDOCS -> PORT_OPTIONS:MDOCS;
. trim Makefile headers.
 2013-06-19 18:53:54 +00:00
Boris Samorodov
e4da7811ba . NOPORTDOCS -> PORT_OPTIONS:MDOCS; 
. use f instead of file for a variable (portlint warns against file);
. do not mute install commands;
. remove article from COMMENT;
. trim Makefile headers;
. pet portlint: use one space after WWW: at pkg-descr.
 2013-06-19 18:51:16 +00:00
Boris Samorodov
f257e1ad16 . remove pkg-plist (along with the previous commit). 2013-06-19 18:44:32 +00:00
Boris Samorodov
cb68e7ac4a . NOPORTDOCS -> PORT_OPTIONS:MDOCS; 
. use PORTDOCS and PORTDATA at makefile;
. mute mkdirs;
. add padding to PKGMESSAGE;
. remove article from COMMENT.
 2013-06-19 18:43:13 +00:00
Boris Samorodov
52d1606f7c . NOPORTEXAMPLES -> PORT_OPTIONS:MEXAMPLES; 
. use PORTEXAMPLES at Makefile;
. trim Makefile headers.
 2013-06-19 18:38:46 +00:00
Boris Samorodov
7ce5fafe53 . add license (GPLv2); 
. bump PORTREVISION;
. trim article from COMMENT;
. trim Makefile headers.
 2013-06-19 16:36:53 +00:00
Boris Samorodov
2f705dfa96 . pet portlint: add USE_LDCONFIG; 
. bump PORTREVISION.
 2013-06-19 15:43:56 +00:00
Boris Samorodov
0fe9c450a3 . trim Makefile headers; 
. remove the indefinite article from COMMENT.
 2013-06-19 15:39:18 +00:00
Boris Samorodov
3d4edf2fac . NOPORTDOCS -> PORT_OPTIONS:MDOCS; 
. use PLIST_FILES and PORTDOCS;
. remove pkg-plist (4 lines).
 2013-06-19 14:10:02 +00:00
Boris Samorodov
1eb6ad8592 . NOPORTDOCS -> PORT_OPTIONS:MDOCS; 
. remove LICENSE_FILE for a standard license (GPLv2);
. trim Makefile headers.
 2013-06-19 13:35:55 +00:00
Boris Samorodov
f0b8908924 Index: Makefile 
===================================================================
--- Makefile	(revision 321238)
+++ Makefile	(working copy)
@@ -1,9 +1,5 @@
-# New ports collection makefile for:	seqio
-# Date created:				17 August 2001
-# Whom:					Tony Maher
-#
+# Created by: Tony Maher
 # $FreeBSD$
-#

 PORTNAME=	seqio
 PORTVERSION=	1.2.2
@@ -13,38 +9,32 @@
 DISTNAME=	${PORTNAME}

 MAINTAINER=	ports@FreeBSD.org
-COMMENT=	A set of C functions which can read/write biological sequence files
+COMMENT=	Set of C functions which can read/write biological sequence files

 WRKSRC=		${WRKDIR}/${PORTNAME}-${PORTVERSION}

 EXAMPLES=	example1.c example2.c example3.c example4.c seqio.c \
 		seqio.h Makefile
 PROGRAMS=	fmtseq grepseq idxseq typeseq wcseq
+PLIST_FILES+=	${PROGRAMS:S,^,bin/,}
+PORTEXAMPLES=	*
+PORTDOCS=	*

+OPTIONS_DEFINE=	DOCS EXAMPLES
+
+.include <bsd.port.options.mk>
+
 do-install:
-	cd ${WRKSRC}; \
-	for file in ${PROGRAMS}; do \
-		${INSTALL_PROGRAM} $$file ${PREFIX}/bin; \
-	done
-.if !defined(NOPORTEXAMPLES)
-	${MKDIR} ${EXAMPLESDIR}
-	cd ${WRKSRC}; \
-	for file in ${EXAMPLES}; do \
-		${INSTALL_DATA} $$file ${EXAMPLESDIR}; \
-	done
+	${INSTALL_PROGRAM} ${PROGRAMS:S,^,${WRKSRC}/,} ${PREFIX}/bin
+.if ${PORT_OPTIONS:MEXAMPLES}
+	@${MKDIR} ${EXAMPLESDIR}
+	${INSTALL_DATA} ${EXAMPLES:S,^,${WRKSRC}/,} ${EXAMPLESDIR}
 .endif
-.if !defined(NOPORTDOCS)
-	${MKDIR} ${DOCSDIR}
-	${MKDIR} ${DOCSDIR}/html
+.if ${PORT_OPTIONS:MDOCS}
+	@${MKDIR} ${DOCSDIR}/html
 	${INSTALL_DATA} ${WRKSRC}/bioseq.txt ${DOCSDIR}
-	cd ${WRKSRC}/doc; \
-	for file in *.doc; do \
-		${INSTALL_DATA} $$file ${DOCSDIR}; \
-	done
-	cd ${WRKSRC}/html; \
-	for file in *.html; do \
-		${INSTALL_DATA} $$file ${DOCSDIR}/html; \
-	done
+	${INSTALL_DATA} ${WRKSRC}/doc/*.doc ${DOCSDIR}
+	${INSTALL_DATA} ${WRKSRC}/html/*.html ${DOCSDIR}/html
 .endif

 .include <bsd.port.mk>
 2013-06-19 13:09:19 +00:00
Boris Samorodov
4392a3472d . NOPORTDOCS -> PORT_OPTIONS:MDOCS; 
. use PLIST_FILES and PORTDOCS;
. get rid of  pkg-plist;
. pet portlint: use one space after WWW: at pkg-descr;
. trim Makefile headers;
. remove the indefinite article from COMMENT.
 2013-06-19 12:43:28 +00:00
Andrej Zverev
b62e166e01 - Avoid of using SITE_PERL 
- Remove depend on DB_File.pm since it part of perl distribution

PR:		ports/178877
Submitted by:	az
Approved by:	matainer (timeout)
 2013-06-07 06:51:42 +00:00
Martin Wilke
db74061cad - Update to 3.6.9.5 
PR:		179224
Submitted by:	Ports Fury
 2013-06-04 10:02:30 +00:00
Martin Wilke
0ed7cc3196 - Fix build with clang 
PR:		179215
Submitted by:	Ports Fury
 2013-06-04 08:26:03 +00:00
Wen Heping
b3107f6cbf - Trim Makefile headers 2013-06-01 14:22:35 +00:00
Martin Wilke
727fa1d184 - Update to 6.2.05 
PR:		179061
Submitted by:	Ports Fury
 2013-05-29 05:25:49 +00:00
Wen Heping
e5c64e2888 - Update to 3.5.1 
- Trim Makefile headers
- Convert to optionsNG
- Update WWW, MASTER_SITES and COMMENT
 2013-05-26 07:49:47 +00:00
Martin Wilke
3781b13d04 - Update to 6.2.04 
PR:		178590
Submitted by:	Ports Fury
 2013-05-21 08:19:03 +00:00
Baptiste Daroussin
9f1de9b900 Convert USE_NCURSES by USES=ncurses 
Convert USE_READLINE by USES=readline
 2013-05-06 15:34:17 +00:00
Baptiste Daroussin
dc9dfec602 Fix build by adding an explicit dep on pkgconf 2013-05-03 20:48:34 +00:00
Frederic Culot
ec91efa233 - Update to 1.13.0 
- Improve COMMENT (remove leading article, add missing space)
- Remove unneeded BSD license file
- Trim Makefile's header
- Pet portlint (move LICENSE section earlier, change tab to space in WWW link)

Changes:	http://sourceforge.net/p/staden/news/2013/03/iolib-1130-released/
 2013-04-30 15:41:49 +00:00
Xin LI
59816216bc Workaround the way mopac installs executables. 
PR:		ports/171932
Reported by:	Jinsong Zhao <jszhao yeah net>
 2013-04-29 17:30:09 +00:00
Martin Wilke
3cf5f6199d - Update to 6.2.02 
PR:		178031
Submitted by:	Ports Fury
 2013-04-29 14:23:03 +00:00
Rene Ladan
59140a81a3 Use bsd.port.options.mk instead of bsd.port.{pre|post}.mk 2013-04-29 12:20:35 +00:00
Marcus von Appen
821843ca06 - Convert USE_ICONV=yes to USES=iconv 
- Change USE_GNOME=pkgconfig|gnomehack to USES=pathfix|pkgconfig while here

Reviewed by:	bapt, kwm
 2013-04-27 08:50:46 +00:00
Bryan Drewery
6539776faf Remove unneeded escaping 2013-04-26 16:23:13 +00:00
Martin Wilke
ff0810582d - Update to 5.0.6 
PR:		178032
Submitted by:	Ports Fury
 2013-04-26 06:57:37 +00:00
Glen Barber
8b8bc02a97 Update MASTERSITES for my server to use https 
Approved by:	wen (maintainer, implicit)
 2013-04-26 04:03:54 +00:00
Alex Kozlov
e159824929 - Convert USE_GETTEXT to USES (part 3) 
Approved by:	portmgr (bapt)
 2013-04-24 18:10:30 +00:00
Baptiste Daroussin
992586fa08 Finish converting the whole ports tree to USES=pkgconfig 2013-04-23 14:20:25 +00:00
Eitan Adler
5190f14f8d For perl@ owned ports: 
- Fix COMMENT
- Trim header
 2013-03-29 00:44:53 +00:00
Martin Wilke
f811ff18d3 - Update to 4.4.1 
PR:		177257
Submitted by:	Ports Fury
 2013-03-26 01:08:40 +00:00
Martin Wilke
78d7633e69 - Mark broken checksum mismatch 
Reported by:	pointyhat http://pointyhat.freebsd.org/errorlogs/i386-errorlogs/a.8.20130324140101.pointyhat/dotter-20021204.log
 2013-03-25 01:41:31 +00:00
Martin Wilke
fbdc28e4dd - Update to 6.2.01 
PR:		177261
Submitted by:	ports fury
 2013-03-24 16:13:57 +00:00
Max Brazhnikov
ffd97a0193 - convert USE_CMAKE to USES 
- while here clean up some ports from CMAKE_VERBOSE, which is intended
  for users

Approved by:	portmgr (miwi)
 2013-03-22 20:06:14 +00:00
Vanilla I. Shu
42ef81ca40 Fix build with protobuf-2.5.0 
Obtained from:	miwi@
 2013-03-21 14:09:22 +00:00
Jason Helfman
82c28cbbf5 - adopt optionsNG 
- trim historical header
- tighten COMMENT

Approved by:	portmgr (miwi)
 2013-03-18 23:35:01 +00:00
Vanilla I. Shu
5e191b87d1 1: Upgrade protobuf to 2.5.0. 
2: bump revision.
3: document UPDATING.
 2013-03-18 15:14:27 +00:00
Jason Helfman
3005e8f2fc - adoption of optionsNG 
- trim historical header

Approved by:	portmgr (miwi)
 2013-03-18 06:55:42 +00:00
Jason Helfman
4153f3e96b - adoption of optionsNG 
- trim historical header
- fix mixture of DOCS/EXAMPLES -> EXAMPLES
- add shared description for GLUT to bodm

Approved by:	portmgr (miwi)
 2013-03-18 06:54:39 +00:00
Jason Helfman
21ff3eb3b7 - adoption of optionsNG 
- trim historical header
- tighten COMMENT

Approved by:	portmgr (miwi)
 2013-03-18 06:50:12 +00:00
Jason Helfman
aa6aea716d - adoption of optionsNG 
- trim historical header
- use tabs in favor of spaces

Approved by:	portmgr (miwi)
 2013-03-18 06:48:55 +00:00
Martin Wilke
1b607e2b11 - Update to 2012.06.20 
PR:		176544
Submitted by:	Ports Fury
 2013-03-14 05:27:58 +00:00
Baptiste Daroussin
9250d94365 Convert USE_BISON to USES= bison 
It brings bison as a build dependency in case it is set the following way:
USES= bison or USES= bison:build

it brings bison as a run dependency in case it is set the following way:
USES= bison:run

it brings bison both as a run and build dependency in case it the set the following way:
USES= bison:both

While here trim some headers
Convert some USE_GNOME= gnomehack to USES= pathfix
 2013-03-08 11:32:11 +00:00
Rene Ladan
a155d81752 Remove compatibility with FreeBSD 7.X 
While here pet Makefile headers.
 2013-03-06 23:31:58 +00:00
Eitan Adler
0a035043de Add missing item to pkg-plist reported by QAT but not reported by poudriere. 2013-03-03 15:22:43 +00:00
Eitan Adler
0bf06bbddc Update to 2.33 2013-03-03 01:45:00 +00:00
Martin Wilke
ac8c5f4481 - Update to 2.4.1 
PR:		176552
Submitted by:	Ports Fury
 2013-03-02 14:50:25 +00:00
Alexey Dokuchaev
bb8c521c72 Unbreak on 7.X and i386 systems. 
Reported by:	QAT
 2013-02-25 13:00:15 +00:00
Alexey Dokuchaev
53bda2f119 Add Unipro UGENE, a free open-source crowss-platform bioinformatics software. 
PR:		ports/173387
Submitted by:	Hannes Hauswedell
 2013-02-23 04:50:48 +00:00
Frederic Culot
417a7b673b - Update to 0.52 [1] 
- Capitalize names (Perl) in COMMENT

PR:		ports/176003 [1]
Submitted by:	Gea-Suan Lin <gslin@gslin.org>
 2013-02-16 14:58:51 +00:00
Ruslan Makhmatkhanov
a699fc1724 - remove empty files 2013-02-15 08:57:19 +00:00
Martin Wilke
c23a507726 - Fix build with clang 
PR:		175034
Submitted by:	Ports Fury
 2013-02-10 07:55:45 +00:00
Philippe Audeoud
9b5140c936 - Update to 1.27 
- Changelog: http://cpansearch.perl.org/src/TFRAYNER/Bio-MAGETAB-1.27/Changes
 2013-02-05 14:45:14 +00:00
Marcelo Araujo
6faa1b7774 - Update to 20121109. 
PR:		ports/175014
Submitted by:	KATO Tsuguru <tkato432@yahoo.com>
 2013-02-04 10:07:30 +00:00
Thomas Abthorpe
49626f567a - Strip header at request of original creator 
Submitted by:	trevor
With hat:	portmgr
 2013-01-27 05:55:20 +00:00
Philippe Audeoud
fad40cef87 - Update to 2.32 
- Changelog: http://cpansearch.perl.org/src/LDS/Bio-Graphics-2.32/Changes
 2013-01-24 14:36:55 +00:00
Max Brazhnikov
81c27c891a Bump PORTREVISION after DESKTOP_ENTRIES update 2013-01-23 15:00:18 +00:00
Marcelo Araujo
05e78fe84a - Update to 9.03. 
PR:		ports/172499
Submitted by:	KATO Tsuguru <tkato432@yahoo.com>
 2013-01-14 08:04:38 +00:00
Max Brazhnikov
5dd37213f5 - Update DESKTOP_ENTRIES: 
* rephrase Comment field or use port ${COMMENT} if appropriate
  * adjust Icon field according to the Desktop Entry Specification
  * update Categories field: remove deprecated category Application;
    set main category, if missing
- Remove indefinite article and/or rephrase COMMENT
- Trim Makefile header
- Other minor changes
 2013-01-07 02:07:26 +00:00
Rene Ladan
b29162eed1 Take over maintainership. 
Approved by:	pav (previous maintainer)
 2012-12-28 21:59:42 +00:00
Rene Ladan
b06829187f Use the new project URL to let the application attach coorectly to the 
project, and some cleanups:
- use optionsNG
- update commands in pkg-install.in
- improve %%AMD64%% comment handling
- convert Makefile header
- remove unused variable SIMAP_URL

Bump PORTREVISION

PR:		ports/174748
Submitted by:	myself
Approved by:	maintainer (pav@)
 2012-12-27 20:12:06 +00:00
Andrej Zverev
14d750125f Cleanup supporting perl version 5.8 and 5.10, 
lang/perl5.8 and lang/5.10 will be removed from ports tree soon.
 2012-12-17 15:39:36 +00:00
Wen Heping
b7e651129e - Update to 1.5 
Changes: http://cpansearch.perl.org/src/RBUELS/Bio-GFF3-1.5/Changes
 2012-12-16 04:22:15 +00:00
Eitan Adler
1c155b4991 Update to 5.0.4 2012-12-14 17:47:16 +00:00
Max Brazhnikov
4beaa15d30 - Mark conflict with science/openbabel 
- Trim Makefile header
 2012-12-11 14:24:51 +00:00
Max Brazhnikov
5bf9bfc399 science/openbabel: 
- Update openbabel to 2.3.2
- Switch to CMake build system
- Add PYTHON and CAIRO options
- Don't rename babel binary, mark conflict with ancient biology/babel

science/py-openbabel:
- Merge py-openbabel to openbabel

other:
- chase openbabel update
 2012-12-11 14:19:54 +00:00
Baptiste Daroussin
db767ee750 Remove hardcoded extract dependency on diablo-jdk16, directly use USE_ZIP 
instead given that jar files are just zip files, remove hardcoded do extract
target.

Reported by:	linimon, matthew
 2012-12-11 07:26:38 +00:00
Baptiste Daroussin
7c354b1913 Decommissioning java 1.5 (EOLed since October 2009): 
suppress any reference to JAVA_VERSION=	1.5+ (part2)
 2012-12-10 13:18:28 +00:00
Baptiste Daroussin
580b0c7423 Decommissioning java 1.5 (EOLed since October 2009): 
suppress any reference to USE_JAVA=	1.5+ (part1)
 2012-12-10 11:25:27 +00:00
Pawel Pekala
e8c48e4d84 - Support CC properly 
- Switch to PLIST_FILES
- Add option for GTK2 support

PR:		ports/174174
Submitted by:	KATO Tsuguru <tkato432@yahoo.com>
Feature safe:	yes
 2012-12-07 22:22:06 +00:00
Anton Berezin
c25a46dd74 Update to 2.31. 
Changes: http://search.cpan.org/dist/Bio-Graphics/Changes

Feature safe:	yes
 2012-12-07 13:49:15 +00:00
Ryan Steinmetz
33a2019014 - Reset MAINTAINER due to unrecoverable email bounce 
Reported by:	portscout
Feature safe:	yes
 2012-12-04 20:28:16 +00:00
Pietro Cerutti
a6f872f2b0 - Fix build with clang 
Feature safe:	yes
 2012-12-03 11:27:47 +00:00
Armin Pirkovitsch
2b222ce70c - Update to version 6.1.01 
- Add MAKE_JOBS_SAFE
- Convert to optionsng
- Trim Makefile header

PR:           ports/171971
Submitted by: KATO Tsuguru <tkato432 _at_ yahoo.com>
Approved by:  beat (mentor)
Feature safe: yes
 2012-12-01 00:00:43 +00:00
Armin Pirkovitsch
f50819ce60 - Update to version 5.0.2 
- Add MAKE_JOBS_UNSAFE
- Convert to optionsng

PR:           ports/171970
Submitted by: KATO Tsuguru <tkato432 _at_ yahoo.com>
Approved by:  beat (mentor)
Feature safe: yes
 2012-11-30 23:51:49 +00:00
Baptiste Daroussin
18210032c9 2012-11-26 benchmarks/gsbench: No more public distfiles 
2012-11-26 benchmarks/xengine: No more public distfiles
2012-11-26 biology/belvu: No more public distfiles
2012-11-26 multimedia/kaffeine-mozilla: No more public distfiles
2012-11-26 www/gnustep-ticker: Abandonware
2012-11-26 net/tryst-examples: Abandonware
2012-11-26 net/tryst: Abandonware

Feature safe:	yes
 2012-11-28 09:05:54 +00:00
Wen Heping
2a3cdaf773 - Update to version 2.0 
- Update pkg-descr

PR:		172497
Submitted by:	KATO Tsuguru <tkato432@yahoo.com>

Feature safe:	yes
 2012-11-15 07:04:29 +00:00
Pawel Pekala
ff942cf270 - Update to version 4.4.0 
- Mark MAKE_JOBS_SAFE
- Make dependency on print/pdflib optional
- Switch to PLIST_FILES

While here:
- Add missing deps
- Add desktop entry

PR:		ports/172498
Submitted by:	KATO Tsuguru <tkato432@yahoo.com>
Feature safe:	yes
 2012-10-30 20:31:14 +00:00
Pawel Pekala
987bb3de6b Update to version 2.12.4 
PR:		ports/172218
Submitted by:	KATO Tsuguru <tkato432@yahoo.com>
Feature safe:	yes
 2012-10-30 17:53:39 +00:00
Wen Heping
cb1e050008 - Reset maintainer to perl@ 
Feature safe:	yes
 2012-10-30 02:03:29 +00:00
Wen Heping
68d3450c97 - Update to 1.4 
Changes: http://cpansearch.perl.org/src/RBUELS/Bio-GFF3-1.4/Changes
- Trim Makefile headers

Feature safe:	yes
 2012-10-30 01:59:37 +00:00
Wen Heping
a2845e428a - Trim Makefile headers 
- Reset maintainer to perl@

Feature safe:	yes
 2012-10-30 01:47:15 +00:00
Baptiste Daroussin
da6c3af5fc Deprecate a bunch of ports that are either abandonware and/or for which no more 
public distfiles are available, or for which are -devel version with a more
recent stable version for long

Feature safe:	yes
 2012-10-26 14:57:50 +00:00
Baptiste Daroussin
3db2e90933 2012-10-20 chinese/wangttf: No more public distfiles 
2012-10-20 chinese/stardict-dict-zh_TW: No more public distfiles
2012-10-20 chinese/stardict-dict-zh_CN: No more public distfiles
2012-10-20 chinese/mingunittf: No more public distfiles
2012-10-20 chinese/dfsongsd: No more public distfiles
2012-10-20 biology/dna-qc: No more public distfiles

Feature safe:	yes
 2012-10-25 23:05:56 +00:00
Wen Heping
5c73d4b55d - Update to 1.26 
Changes: http://cpansearch.perl.org/src/TFRAYNER/Bio-MAGETAB-1.26/Changes

Feature safe:	yes
 2012-10-25 00:18:32 +00:00
Dirk Meyer
851945b1eb - cleanup comments 
Feature safe: yes
 2012-10-13 13:39:56 +00:00
Wen Heping
27c347dbdd - Update to 1.5.3 
- Trim Makefile headers
 2012-10-08 03:17:02 +00:00
Wen Heping
baa9b66158 - Take maintainership 2012-10-01 14:55:55 +00:00
Thomas Abthorpe
d46aafc64e - Reassign to the heap at maintainer's request 2012-10-01 14:45:16 +00:00
Max Brazhnikov
ecd280d820 Add new ports biology/plink [1] and biology/plinkseq [2]: 
PLINK is a free, open-source whole genome association analysis toolset.
PLINK/SEQ is an open-source C/C++ library for working with human
genetic variation data.

PR:		ports/171918 [1]
PR:		ports/171922 [2]
Submitted by:	Jason Bacon <jwbacon at tds.net>
 2012-09-27 09:59:25 +00:00
Ruslan Makhmatkhanov
9f67b5e7f1 - update to 1.60 
while here:
- convert Makefile header into two-line format
- update COMMENT (indefinite article removed)
- change USE_PYTHON to just -2.7
- remove py-reportlab from BUILD_DEPENDS and kick PYTHON_SITELIBDIR from there
- tab -> space change in pkg-descr:WWW

PR:		171115
Submitted by:	wen
Approved by:	Mauricio Herrera Cuadra <mauricio at arareko dot net> (maintainer)
 2012-09-25 08:06:42 +00:00
Alexey Dokuchaev
bd4927ffa4 Mea culpa, s/Whom/Created by/ 2012-09-23 15:40:58 +00:00
Alexey Dokuchaev
e6bc1ecae5 - Adjust "Created by" tag to include more complete submitter's information 
- Mute MKDIRs, remove trailing dot from RESTRICTED, drop leading indefinite
  article from COMMENT where appropriate
 2012-09-23 15:38:58 +00:00
Thomas Abthorpe
f48ef480ea - Reassign to the heap at maintainer's request 2012-09-22 15:34:16 +00:00
Baptiste Daroussin
6b968aca1e Deprecated a bunch a ports with nor more public distfiles (thanks ehaupt's 
distilator
 2012-09-20 22:26:26 +00:00
Mark Linimon
3fd15ea0ae Mark as broken on sparc64: depends on thread-local storage, which is not 
available on sparc64.

Hat:		portmgr
 2012-09-08 08:30:39 +00:00
Baptiste Daroussin
0ff48b2c81 Fix build with clang 2012-08-24 10:18:51 +00:00
Michael Scheidell
1217f4c6f2 - Submitter is now maintainer 
PR:		ports/169920
Approved by:	Fernan Aguero <fernan@iib.unsam.edu.ar> (maintainer)
 2012-08-07 13:54:02 +00:00
Michael Scheidell
2c946497ba - Update to version 6.903 
PR:		ports/169920
Submitted by:	"Reed A. Cartwright" <cartwright@asu.edu>
Approved by:	maintainer (timeout, 21 days)
 2012-08-07 12:26:39 +00:00
Koop Mast
5aa7246575 Switch from libglut to freeglut and retire libglut. Libglut hasn't been 
developed in years and has been dropped from the MESA 8.0 distribution.
Freeglut is a rewrite of glut and is actively developed and is used by
many linux distributions instead of libglut.

Bump all ports that directly depend on libglut because of the shlib version
change.

There are some extra items in this patch.

*) Because freeglut doesn't have the same dependancies as libglut, some ports
	need extra dependencies added to USE_XORG to make them build.
*) Mark graphics/f90gl broken, f90gl depends on a header that is only shipped
	with libglut.
*) Remove option for libglut/freeglut selection in games/cake, only freeglut
	remains now.
*) While here fix a png related build issue games/vegastrike.

Thanks to miwi for running the exp-run.

Approved by:	portmgr (miwi)

Collaboration with:	zeising@
Obtained from:	xorg-dev staging area.
 2012-08-04 22:52:02 +00:00
Carlo Strub
db5e2bc177 Fix typos in COMMENT 
Approved by:	portmgr@ (implicit)
 2012-07-29 11:17:02 +00:00
Carlo Strub
d5fda8cb2c Fix typos in COMMENT 2012-07-25 06:32:06 +00:00
Carlo Strub
1863cc77b0 Fix typos in COMMENT 2012-07-24 07:19:21 +00:00
Gerald Pfeifer
ebd255b2f9 Replace USE_GCC=4.4+ by USE_GCC=4.6+ since GCC 4.4 is on its way out. 
Approved by:	maintainer
 2012-07-21 22:20:32 +00:00
Sunpoet Po-Chuan Hsieh
27e2f4a9fa - Update to 1.23 
- Add LICENSE
- Remove WRKSRC

Changes:	http://search.cpan.org/dist/Bio-MAGETAB/Changes
 2012-07-19 16:42:55 +00:00
Andrej Zverev
a41069ab3b - Remove SITE_PERL from *_DEPENDS 
Approved by: portmgr@ (bapt@)
 2012-06-30 14:53:22 +00:00
Andrej Zverev
996f1f37d7 - Remove SITE_PERL from *_DEPENDS 
Approved by: portmgr@ (bapt@)
 2012-06-30 05:23:19 +00:00
Dirk Meyer
79ed41a8a0 - reset MAINTAINER 2012-06-26 05:44:19 +00:00
Doug Barton
44fa804810 s/X11BASE/LOCALBASE/, or equivalent. 
The X11BASE variable is long gone, however these ports were not updated.
 2012-06-24 21:53:38 +00:00
Sunpoet Po-Chuan Hsieh
ac4c9341cf - Update to 2.29 
Changes:	http://search.cpan.org/dist/Bio-Graphics/Changes
 2012-06-18 09:30:35 +00:00
Sylvio Cesar Teixeira
4e26180092 - Update to version 2.1.8 
Remove file:
files/patch-Makefile.in
files/patch-configure
files/patch-src__control__defaults.h
pkg-plist

PR:		ports/168994
Submitted by:	KATO Tsuguru <tkato432@yahoo.com>
 2012-06-17 20:22:32 +00:00
Sylvio Cesar Teixeira
5d64a9fe70 - Update to version 2.12.3 
PR:		ports/168993
Submitted by:	KATO Tsuguru <tkato432@yahoo.com>
 2012-06-17 20:04:32 +00:00
Sunpoet Po-Chuan Hsieh
8825b172e2 - Update to 0.50 
- Add TEST_DEPENDS
- Sort PLIST
 2012-06-12 18:55:28 +00:00
Steve Wills
63d09c9c9b - Convert all remaining instances of BUILD_DEPENDS=${RUN_DEPENDS} or 
RUN_DEPENDS=${BUILD_DEPENDS} to use := which portlint has warned
  about for a while.

PR:		ports/168208
Approved by:	portmgr (miwi)
 2012-06-10 18:42:48 +00:00
Dmitry Marakasov
02812eb4fb - Fix maintainer email 
Submitted by:	maintainer via private email
 2012-06-07 13:04:53 +00:00
Dmitry Marakasov
f234335598 SeqAn is an open source C++ library of efficient algorithms 
and data structures for the analysis of sequences with the
focus on biological data. The library is licensed under the
3-clause BSD license except the applications which are GPL.

WWW: http://www.seqan.de/

PR:		167571
Submitted by:	Hannes <h2+fbsdports@fsfe.org>
 2012-06-06 17:51:33 +00:00
Andrej Zverev
24374f6b47 - Remove SITE_PERL from *_DEPENDS 2012-06-04 08:31:14 +00:00
Sunpoet Po-Chuan Hsieh
eb45489616 - Update to 0.49 2012-06-03 15:12:49 +00:00
Carlo Strub
fe19e92f65 Set maintainership back to ports@ 2012-06-03 12:14:38 +00:00
Dirk Meyer
2b74a89bc8 - update png to 1.5.10 2012-06-01 05:26:28 +00:00
Carlo Strub
2f103993ae Remove non-serving mirror 2012-05-20 12:04:26 +00:00
Pav Lucistnik
c4e07de974 - Adjust BOINC_* variables to be consistent with new system in boinc-client 2012-05-16 13:46:30 +00:00
Sunpoet Po-Chuan Hsieh
b9d8e487cc - Update to 0.48 
- Add BUILD_DEPENDS
 2012-05-03 09:48:21 +00:00
Frederic Culot
453bfbe544 - Update to 1.3 
Changes:	http://search.cpan.org/dist/Bio-GFF3/Changes
 2012-04-26 10:37:09 +00:00
Wen Heping
c7aa0a29eb - Update to 2.28 
ChangeLog: http://cpansearch.perl.org/src/LDS/Bio-Graphics-2.28/Changes
 2012-04-17 13:02:59 +00:00
Frederic Culot
6c94ec10d3 - Update to 1.2 
- Add LICENSE (Artistic 1 & GPL 1)
- Add TEST_DEPENDS

Changes:	http://search.cpan.org/dist/Bio-GFF3/Changes
 2012-04-16 13:06:04 +00:00
Wen Heping
6058b2661d - Update to 0.47 2012-04-11 01:34:57 +00:00
Wen Heping
347254b1e5 - Update to 1.0 
- Reset maintainer to perl@

Feature safe:	yes
 2012-03-22 11:08:28 +00:00
Philip M. Gollucci
b59621d3ae - Revert ports/165605 as requested by portmgr@ 
Note: devel/p5-B-Size and devel/p5-Devel-Arena
where intentionally not restored.

PR:             ports/165605
Approved by:    portmgr (bapt)
Feature safe:   yes (I sure hope so)
 2012-03-13 16:15:36 +00:00
Philip M. Gollucci
2cf4c1e2c8 - Remove ports that only work with < perl 5.12 (devel/p5-B-Size, devel/p5-Devel-Arena) 
- Remove conditionals for PERL_LEVEL < 501200
- Remove regression-test targets b/c this will be centralized in Mk/bsd.perl.mk
- Other minor cleanups
  RUN_DEPENDS = ${BUILD_DEPENDS} -> RUN_DEPENDS:= ${BUILD_DEPENDS}

PR:             ports/165605
Submitted by:   pgollucci (myself)
Approved by:    portmgr (linimon)
Exp Run by:     linimon
Tested by:      make index
 2012-03-08 18:45:38 +00:00
Wen Heping
c01d2361ab - Update to 1.59 
PR:		ports/165582
Submitted by:	wen@ (myself)
Approved by:	Mauricio Herrera Cuadra <mauricio@arareko.net> (maintainer, via email)
 2012-03-06 06:40:50 +00:00
Wen Heping
6571b7f059 - Update to 0.46 2012-03-05 08:22:46 +00:00
Wen Heping
f052f825e0 - Update to 0.4.5 2012-02-23 13:43:25 +00:00
Martin Wilke
b34594ac8a - Update MASTER_SITES and WWW: line 
- Add LICENSE
- Support PLIST_FILES

PR:		164985
Submitted by:	Ports Fury
 2012-02-19 23:24:52 +00:00
Maho Nakata
a8d4c9422e update to 1.5.0.1. 2012-02-16 02:30:10 +00:00
Sunpoet Po-Chuan Hsieh
69210a7789 - Update to 0.78 
- Sort TEST_DEPENDS, MAN1, MAN3 and PLIST

Changes:	http://search.cpan.org/dist/Bio-NEXUS/doc/changes.txt
 2012-02-11 02:04:41 +00:00
Sunpoet Po-Chuan Hsieh
c9472c880f - Update to 2.26 
Changes:	http://search.cpan.org/dist/Bio-Graphics/Changes
 2012-02-11 02:04:24 +00:00
Sunpoet Po-Chuan Hsieh
9bf25c17ed - Update to 1.22 
Changes:	http://search.cpan.org/dist/Bio-MAGETAB/Changes
 2012-02-09 03:28:51 +00:00
Wen Heping
58000f342c - Update to 0.77 2012-02-09 01:23:59 +00:00
Dirk Meyer
939e416233 - fix build with gcc46 2012-02-07 05:36:27 +00:00
Pav Lucistnik
b63d0c6830 - Mark BROKEN on FreeBSD 9.X and up: does not compile 
gcc: AdFrameworkFunctions.m: Objective-C compiler not installed on this system

Reported by:	pointyhat
 2012-02-05 22:40:04 +00:00
Martin Wilke
fd3d7b435b - Respect CC 
PR:		163172
Submitted by:	Jan Beich <jbeich@tormail.net>
Approved by:	maintainer timeout
 2012-01-27 17:41:00 +00:00
Eitan Adler
c59a3834c4 At the moment 1385 ports use BUILD_DEPENDS= ${RUN_DEPENDS} and 450 
ports use BUILD_DEPENDS:= ${RUN_DEPENDS}. This patch fixes ports that are
currently broken. This is a temporary measure until we organically stop using
:= or someone(s) spend a lot of time changing all the ports over.

Explicit duplication > := > = and this just moves ports one step to the left

Approved by:	portmgr
 2012-01-21 17:40:15 +00:00
Sylvio Cesar Teixeira
aad73e57ae - Update to 3.23 2012-01-17 00:51:39 +00:00
Alex Dupre
1b91e235c3 Chase pdflib.so version and bump PORTREVISION accordingly. 2012-01-10 11:41:37 +00:00
Thomas Abthorpe
e0ac1afbf4 - The proper acronym for Apache Software License 2 is really AL2 
- Thanks to crees@ for generating the initial patch

PR:		ports/163521
Submitted by:	Pedro Giffuni <pfg apache.org>
Hat:		portmgr
Exp run by:	pav
 2012-01-09 15:41:08 +00:00
Wen Heping
9b0bddd84f - Update to 0.87 2011-12-23 08:05:00 +00:00
Sunpoet Po-Chuan Hsieh
80aec0046e - Update to 1.21 
Changes:	http://search.cpan.org/dist/Bio-MAGETAB/Changes
Feature safe:	yes
 2011-11-23 17:40:48 +00:00
Pietro Cerutti
c56e966dc9 - unbreak 
Feature safe:	yes
 2011-11-17 13:22:29 +00:00
Mark Linimon
2e14f19ca3 Does not build on powerpc-9: error in pthreads. 
Hat:		portmgr
Feature safe:	yes
 2011-11-10 14:30:51 +00:00
Martin Wilke
e1c6649edf - Remove WITH_FBSD10_FIX, is no longer needed 2011-11-09 15:26:04 +00:00
Pav Lucistnik
7bd53bb5b7 - Mark BROKEN: does not compile with new fltk 
Reported by:	pointyhat
 2011-11-04 22:19:36 +00:00
Pav Lucistnik
a1e47d45d2 - Fix fetch and update WWW 2011-11-04 20:39:12 +00:00
Martin Wilke
bc14c0ad9e - Fix build on FreeBSD 10 2011-10-29 11:10:22 +00:00
Sunpoet Po-Chuan Hsieh
453389fd26 - Update to 0.45 2011-10-29 06:20:45 +00:00
Doug Barton
989772c9ac The vast majority of pkg-descr files had the following format when they 
had both lines:

Author: ...
WWW: ....

So standardize on that, and move them to the end of the file when necessary.

Also fix some more whitespace, and remove more "signature tags" of varying
forms, like -- name, etc.

s/AUTHOR/Author/

A few other various formatting issues
 2011-10-24 09:11:38 +00:00
Eitan Adler
7e3b32fff8 - remove maintainer tags from pkg-descr 
Approved by:	portmgr
Approved by:	bapt (mentor)
 2011-10-22 23:50:23 +00:00
Sunpoet Po-Chuan Hsieh
80331d2a02 - Update to 0.43 2011-10-17 01:38:22 +00:00
Wen Heping
1ec5b32963 - Update to 0.44 2011-10-13 06:27:34 +00:00
Pav Lucistnik
13b0de982b - ${FFLAGS} might contain commas 
Reported by:	pointyhat
 2011-10-10 20:17:22 +00:00
Wen Heping
de399c166e - Update to 0.7 
ChangeLog: http://cpansearch.perl.org/src/RBUELS/Bio-GFF3-0.7/Changes
 2011-10-10 02:33:51 +00:00
Frederic Culot
a288d48de7 - Fix LICENSE (Artistic 1 instead of Artistic 2) 
- Pet portlint(1)

PR:		ports/161336
Submitted by:	Simon Olofsson <simon@olofsson.de>
 2011-10-07 11:22:46 +00:00
Sunpoet Po-Chuan Hsieh
633fcd8a82 - Update to 2.25 
- Sort MAN3 and PLIST
- Pet portlint

Changes:	http://search.cpan.org/dist/Bio-Graphics/Changes
 2011-10-02 17:03:33 +00:00
Steve Wills
3f7512cd24 - Add build depends to silence build warnings 2011-09-25 00:07:08 +00:00
Steve Wills
d00b961fcf - Fix missing DEPENDS to silence build warnings 2011-09-24 20:45:23 +00:00
Dmitry Marakasov
6f6fbe4bdf - Add LDFLAGS to CONFIGURE_ENV and MAKE_ENV (as it was done with LDFLAGS) 
- Fix all ports that add {CPP,LD}FLAGS to *_ENV to modify flags instead

PR:		157936
Submitted by:	myself
Exp-runs by:	pav
Approved by:	pav
 2011-09-23 22:26:39 +00:00
Wen Heping
cb2fc04876 - Update to 0.6 
ChangeLog: http://cpansearch.perl.org/src/RBUELS/Bio-GFF3-0.6/Changes
 2011-09-22 07:34:49 +00:00
Carlo Strub
178dc40a96 Change maintainer address to my FreeBSD address 
Approved by:	wen@ (mentor)
 2011-09-15 12:33:27 +00:00
Wen Heping
5879d16b61 - Fix MASTER_SITES and WWW: line 
- Add LICENSE
- Support CC/CFLAGS properly

PR:		ports/160083
Submitted by:	KATO Tsuguru <tkato432@yahoo.com>
 2011-08-26 00:24:48 +00:00
Steve Wills
6a945607ef - Add missing BUILD_DEPENDS 
PR:		ports/159827
Submitted by:	swills (me)
Approved by:	wen (maintainer)
 2011-08-18 01:30:02 +00:00
Koop Mast
0e682dded4 Remove USE_GNOME=gnometarget from ports. It has been a empty keyword since 
mid 2008.

PR:		ports/159624
Submitted by:	Ruslan Mahmatkhanov <cvs-src@yandex.ru>
 2011-08-11 19:20:17 +00:00
Wen Heping
ad07e6148a - Update to 1.5.1 2011-08-11 11:37:18 +00:00
Frederic Culot
02ce43955f - Update to 0.40 
- Add LICENSE (Artistic 1 & GPLv1)
 2011-08-09 18:26:45 +00:00
Emanuel Haupt
f760c11728 Remove WWW entries from unmaintained ports that return 404 or where the domain 
disappeared.
 2011-08-02 20:58:23 +00:00
Baptiste Daroussin
a9746993e1 Deprecate port with no more public distfiles 2011-08-02 05:36:33 +00:00
Baptiste Daroussin
2e6cabfa17 Bye bye abandonwares (part 2) 
2011-08-01 benchmarks/rawio: Looks like an abandonware, no more public distfiles
2011-08-01 benchmarks/tmetric: Looks like abandonware, no more public distfiles
2011-08-01 biology/L-Breeder: Looks like an abandonware, no more public distfile
2011-08-01 biology/crimap: Looks like an abandonware, no more public distfile
2011-08-01 biology/distribfold: No more upstream, looks like an abandonware
2011-08-01 biology/kinemage: Looks like an abandonware, no more public distfile
2011-08-01 biology/lsysexp: Looks like an abandonware, no more public distfile
2011-08-01 chinese/chm2html: Looks like an abandonware, no more public distfile
2011-08-01 chinese/ntuttf: No more public distfiles available
2011-08-01 chinese/reciteword: Looks like an abandonware, no more public distfile
2011-08-01 chinese/tocps: No more pulic distfiles
2011-08-01 chinese/xttmgr: Looks like an abandonware, no more public distfile
2011-08-01 comms/mserver: Looks like an abandonware, no more public distfiles
2011-08-01 comms/qicosi: Looks like an abandonware, no more public distfile
2011-08-01 comms/sms_client: Looks like an abandonware, no more public distfile
2011-08-01 comms/smstools: Looks like an abandonware, no more public distfile
2011-08-01 converters/siconv: Looks like an abandonware, no more public distfiles
2011-08-01 converters/utf8conv: Looks like an abandonware, no more public distfile
2011-08-01 databases/pgcluster: Looks like an abandonware, no more public distfile
2011-08-01 databases/py-MySQL: Please use databases/py-MySQLdb instead
2011-08-01 databases/py-SQLDict: Looks like an abandonware, no more public distfile
2011-08-01 databases/py-rrdpipe: Looks like an abandonware, no more public distfile
2011-08-01 databases/sybase_ase: no more public distfiles available
 2011-08-01 04:29:44 +00:00
Sunpoet Po-Chuan Hsieh
1abb4c4130 - Update to 0.39 2011-08-01 03:11:37 +00:00
Mark Linimon
06e6677793 Now that the Java 1.3 and Java 1.4 ports are deprecated and will expire soon, 
remove support for them from bsd.java.mk.  As Jikes is not available in Java 1.5
or higher, remove it from bsd.java.mk too (suggested by hq@) and from the ports
which used it (only occurences were USE_JIKES=no).  Support for the Blackdown VM
is also removed, as it is not available in Java 1.5 and higher.

Also remove the mapping from Java 1.1-1.4 to Java 1.5+ in bsd.java.mk to detect
old, broken ports; therefore bump the minimal value of JAVA_VERSION to 1.5.
While here, replace static values of JAVA_VERSION in files/*.in by
%%JAVA_VERSION%% .

PR:		ports/158969
Submitted by:	rene
Tested on:	pointyhat-west -exp
 2011-07-21 05:03:02 +00:00
Sunpoet Po-Chuan Hsieh
44e3305c58 - Update to 0.38 
- Sort MAN3 and PLIST
 2011-07-16 06:08:34 +00:00
Sunpoet Po-Chuan Hsieh
b0ea119ac6 - Update to 1.20 
- Sort RUN_DEPENDS and MAN3

Changes:	http://search.cpan.org/dist/Bio-MAGETAB/Changes
 2011-07-13 06:48:25 +00:00
Martin Wilke
231379d81f - kick MD5 2011-07-02 11:33:17 +00:00
Chris Rees
f568ba617f - Use USERS and GROUPS 
- Use ${SH} instead of calling script directly

PR:		ports/157575
Submitted by:	Chris Rees (utisoft@gmail.com)
Approved by:	tabthorpe (co-mentor)
 2011-06-27 17:50:37 +00:00
Nicola Vitale
c8a6af0499 - Fix *_DEPENDS after the repocopy of databases/py-sqlalchemy 
(This port doesn't yet support SQLAlchemy 0.7.X)
- Bump PORTREVISION
 2011-06-25 07:21:20 +00:00
Max Brazhnikov
17fdc75f81 Switch dependency on povray to povray-meta port. 
Remove MD5 sum while I'm here.
 2011-06-20 22:32:03 +00:00
Baptiste Daroussin
936e8954f7 Another bunch of deprecation: no more public distfiles and/or abandonware 2011-06-16 17:33:07 +00:00
Baptiste Daroussin
2059327040 Another bunch of deprecation: no more public distfiles and/or abandonware 2011-06-16 10:43:58 +00:00
Wen Heping
3fc502f7c5 - Update to 0.5 
ChangeLog: http://cpansearch.perl.org/src/RBUELS/Bio-GFF3-0.5/Changes
 2011-06-10 08:12:40 +00:00
Julien Laffaye
1ca81797c4 Update to 1.1.04 
PR:		ports/157527
Submitted by:	Motomichi Matsuzaki <mzaki@m.u-tokyo.ac.jp>
Approved by:	bapt (mentor)
 2011-06-09 16:33:21 +00:00
Baptiste Daroussin
17958f49d2 deprecate and set expiration date: 
it is an abandonware and it is unmaintain for very long
 2011-06-08 16:15:45 +00:00
Wen Heping
f7d6e48421 - Update to 0.4.3 2011-06-02 01:38:55 +00:00
Baptiste Daroussin
866dab5761 - update to 2.24 
- add licenses
- changes: http://cpansearch.perl.org/src/LDS/Bio-Graphics-2.24/Changes
 2011-06-01 20:21:51 +00:00
Wen Heping
5d036cfb8c - Update to 1.57 
PR:		ports/156329
Submitted by:	Wen Heping (myself)
Approved by:	maintainer
 2011-05-24 09:06:29 +00:00
Maho Nakata
78581892b3 Update to 1.6. Web site has been moved. 2011-05-11 05:55:27 +00:00
Brendan Fabeny
4fd0a4b1c1 Update math/gsl to 1.15, and adjust PORTREVISION 
and LIB_DEPENDS of dependent ports
 2011-05-09 16:42:27 +00:00
Wen Heping
a6c7fafc81 - Update to 0.4 
http://cpansearch.perl.org/src/RBUELS/Bio-GFF3-0.4/Changes
 2011-05-09 06:32:51 +00:00
Maho Nakata
f2febc81ee update to 1.4.1 
Notified by: Alvin Oga
 2011-05-09 04:36:54 +00:00
Steve Wills
03809fed45 - Update to 2.11 
Changes:	http://cpansearch.perl.org/dist/Bio-Das-Lite/Changes
 2011-05-08 17:06:15 +00:00
Max Brazhnikov
630ca2285f Bump PORTREVISION after open-mofit update 2011-05-02 12:44:53 +00:00
Max Brazhnikov
642c8ce78f Fix build with open-motif-2.3.3 
PR:		ports/154044
Submitted by:	Mikhail Tsatsenko <m.tsatsenko at gmail.com>
Exp-runs by:	pav
 2011-05-02 12:41:44 +00:00
Greg Larkin
7a3687325a - Updated WWW: to a working link 
- Copied unbranded distfile (dotter.LIN) to LOCAL/glarkin for mirroring to
  MASTER_SITE_LOCAL and prevention of fetch checksum error. [1]

Reported by:	pointyhat (via miwi)
 2011-04-22 18:59:11 +00:00
Wen Heping
ac92b12813 Bio::GFF3 are low-level, fast functions for parsing GFF version 3 files. 
All they do is convert back and forth between low-level Perl data
structures and GFF3 text.

WWW: http://search.cpan.org/dist/Bio-GFF3/
 2011-04-22 08:51:24 +00:00
Wen Heping
65d8cb8c00 - Update to 0.4.2 2011-04-13 09:11:20 +00:00
Ade Lovett
fe0d23d638 Update to GNU make 3.82 after numerous -exp runs. 2011-04-11 19:54:35 +00:00
Wen Heping
6edfd6fb2e - Update to 0.36 2011-04-01 08:34:03 +00:00
Martin Wilke
a9481afc8a - Get Rid MD5 support 2011-03-19 12:38:54 +00:00
Wen Heping
50fb69d7fc - Take maintainership 2011-03-14 00:35:45 +00:00
Thomas Abthorpe
531fedaadc - Reassign to the heap 
PR:		ports/155507 ports/155508
 2011-03-13 06:08:53 +00:00
Wen Heping
34ffacfa25 - Update to 0.35 2011-02-28 01:30:15 +00:00
Martin Wilke
9992960752 - Move over to python2.5 or higher 
- While here kick md5
 2011-02-24 23:25:54 +00:00
Wen Heping
0f9eae8df3 - Update to 0.8 2011-02-15 01:59:12 +00:00
Frederic Culot
365d4641b4 - Update to 1.12.5 
Changes:	http://sourceforge.net/news/?group_id=100316&id=297223
 2011-02-11 13:11:45 +00:00
Martin Wilke
9d6770ef98 - Update to 5.1.09 
PR:		154359
Submitted by:	Ruslan Mahmatkhanov <cvs-src@yandex.ru>
Feature safe:	yes
 2011-01-31 11:45:44 +00:00
Pav Lucistnik
e06433c705 - Unbreak the port; I'm not sure how it could possibly work before 
Reported by:	pointyhat
Feature safe:	yes
 2011-01-27 17:41:16 +00:00
Pav Lucistnik
c44cd0a5c2 - Change depobj for fasta3 to something that does not change on fasta updates 
Reported by:	pointyhat
Feature safe:	yes
 2011-01-27 17:26:45 +00:00
Beat Gaetzi
ae9f790ad1 - Update to 36.3.2 to fix distfile fetching on pointyhat 
PR:		ports/154267
Submitted by:	Fernan Aguero <fernan AT iib.unsam.edu.ar> (maintainer)
Feature safe:	yes
 2011-01-26 20:26:36 +00:00
Pav Lucistnik
a953b88289 - Fix fetch 
Reported by:	pointyhat
Feature safe:	yes
 2011-01-24 21:17:30 +00:00
Philip M. Gollucci
3f26ca6c43 - Fix pkg-plist, got the wrong version before 
Reported by:    pointyhat via pav
 2010-12-30 23:08:47 +00:00
Philip M. Gollucci
116ec22ac1 - DISTNAME= ${PORTNAME}-${PORTVERSION} is the default and not needed. 
PR:             ports/153292
Submitted by:   myself (pgollucci)
Tested by:      -exp run by pav
Approved by:    portmgr (pav)
 2010-12-29 20:04:42 +00:00
Philip M. Gollucci
c58c954676 - Update to 1.4.1 
- Remove MD5

PR:             ports/153394
Submitted by:   myself (pgollucci)
Approved by:    mauricio@arareko.net (maintainer)
Sponsored by:   RideCharge Inc. / TaxiMagic
 2010-12-27 15:11:50 +00:00
Sunpoet Po-Chuan Hsieh
a32defea5d - Use canonical format for FreeBSD.org MAINTAINER addresses 
- Remove obsolete MD5 checksum while I'm here

PR:		ports/152844
Submitted by:	sunpoet (myself)
Approved by:	miwi (with portmgr hat)
 2010-12-25 16:55:41 +00:00
Wen Heping
bba5355e92 - Update to 2.18 
ChangeLog: http://cpansearch.perl.org/src/LDS/Bio-Graphics-2.18/Changes
 2010-12-23 06:37:08 +00:00
Wen Heping
44a8e2746c - Update to 0.34 2010-12-23 06:33:33 +00:00
Wen Heping
a8874c7021 - Fix fetch 
Reported by:	QAT@
 2010-12-21 00:12:22 +00:00
Wen Heping
0c58bca1ec - Update to 0.33 2010-12-16 08:19:56 +00:00
Philip M. Gollucci
7823a28b14 - Update to 0.32 
With Hat:       perl@
Changes:        http://search.cpan.org/dist/Bio-Phylo/Changes
 2010-12-12 21:29:40 +00:00
Philip M. Gollucci
8563ed7899 - fix fetch: wget is not required for fetching 
Reported by:    QAT
 2010-12-12 08:10:05 +00:00
Ade Lovett
4a8684e352 Sync to new bsd.autotools.mk 2010-12-04 07:34:27 +00:00
Wen Heping
01c6777188 - Update to 0.4.1 2010-12-02 13:42:09 +00:00
Alexey Dokuchaev
d2da4dcb85 Improve port description. 
Approved by:	maintainer timeout since December 2009
 2010-11-29 08:17:34 +00:00
Philip M. Gollucci
c24f9508d3 - Also remove them from pkg-plist lists not from me that crept in 2010-11-24 06:19:46 +00:00
Wen Heping
fabc490448 - Update to 0.31 2010-11-22 08:50:39 +00:00
Wen Heping
5c243d5c84 - Update to 2.1 2010-11-22 00:15:25 +00:00
Wen Heping
4cfe377eb9 - Update to 0.30 
PR:		ports/152205
Submitted by:	Gea-Suan Lin <gslin@gslin.org>
 2010-11-17 06:24:38 +00:00
Steven Kreuzer
1783398c20 Fix plist. 
Reported by:	QAT
 2010-11-16 23:55:41 +00:00
Wen Heping
f77bbf6dfe - Update to 2.15 
Changelog: http://search.cpan.org/src/LDS/Bio-Graphics-2.15/Changes

PR:		ports/152189
Submitted by:	Gea-Suan Lin <gslin@gslin.org>
 2010-11-16 08:07:27 +00:00
Wen Heping
dbe1b3c46b - Update to 1.5.0 2010-11-10 08:52:26 +00:00
Philippe Audeoud
3ccd369106 - Update to 0.28 2010-11-09 14:15:44 +00:00
Pav Lucistnik
b48012ad65 - Unbreak build: CPP is now part of MAKE_ENV 
Reported by:	pointyhat
 2010-11-08 15:05:11 +00:00
Wen Heping
aa13d40cda - Update to 2.10 
Changelog: http://search.cpan.org/src/RPETTETT/Bio-Das-Lite-2.10/Changes
 2010-11-04 06:24:22 +00:00
Rene Ladan
0fe3bfd649 - Unbreak by removing some old and adding some new master sites 
- Bump PORTREVISION
PR:		ports/151733
Submitted by:	Chris Petrik [c.petrik.sosa gmail.com]
 2010-10-30 23:51:30 +00:00
Wen Heping
a9e02fc8e4 - Update to 0.4.0 2010-10-26 00:34:36 +00:00
Wen Heping
8d82354698 - Update to 0.26 
- Reset maintainer to perl@
 2010-10-25 10:59:25 +00:00
Wen Heping
67d49aa254 - Update to 0.22 2010-10-22 09:29:44 +00:00
Frederic Culot
02a06c807c Update my MAINTAINER address to culot@FreeBSD.org. 
Approved by:	sahil@ (mentor)
 2010-10-20 05:53:20 +00:00
Wen Heping
891ffdbfa0 - Update to 2.14 
ChangeLog: http://search.cpan.org/src/LDS/Bio-Graphics-2.14/Changes
 2010-10-19 10:42:43 +00:00
Ade Lovett
6abd00a86b Punt autoconf267->autoconf268 2010-10-16 11:52:47 +00:00
Wen Heping
34df475911 - Update to 4.2.0 2010-10-08 02:06:53 +00:00
Ade Lovett
7e80cde328 Round one migration of ports from automake{19,110} to automake111 2010-10-05 19:57:56 +00:00