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Author SHA1 Message Date
Pav Lucistnik
8fbfe2305e - Update checksum again, seems author removes .ps version of documentation 
from tarball
- Unmark broken, it builds for me just fine

Approved by:	adamw (mentor)
 2003-11-21 22:28:34 +00:00
Trevor Johnson
7e223b8511 Define USE_PERL5_BUILD, not erroneous USE_PERL. 
Submitted by:	Oliver Eikemeier
 2003-11-20 15:06:14 +00:00
Trevor Johnson
318a536982 Define USE_PERL to make Perl available for (mostly deprecated) 
"perl -pi -e" construction.
 2003-11-20 13:51:47 +00:00
Pav Lucistnik
9e79d0a9c6 - Unbreak on 5.x 
Approved by:	adamw (mentor)
 2003-11-20 09:28:34 +00:00
Kirill Ponomarev
f1b2dca9e3 - Update to new version 2003.11.17 
- Unbreak this port
 2003-11-17 13:36:41 +00:00
Joe Marcus Clarke
7f26bf3bf0 unPERLify by using REINPLACE_CMD and SED where appropriate. 
PR:		47654
Submitted by:	Simon 'portlint' Schubert <corecode@corecode.ath.cx>
 2003-11-15 20:13:21 +00:00
Max Khon
93826fe929 Switch to wxgtk2. 2003-11-14 12:37:26 +00:00
Trevor Johnson
e99ceadaf6 Use the FIND and XARGS macros introduced in bsd.port.mk 1.391. 2003-11-13 14:45:08 +00:00
Trevor Johnson
11b0931878 Remove my e-mail address from comment blocks of ports 
I have contributed, in hopes of attracting less spam.
 2003-11-13 10:11:35 +00:00
Max Khon
2b84902e8e wxgtk-devel -> wxgtk 2003-11-09 19:34:52 +00:00
Max Khon
626ca478fe - Switch to wxgtk2 
- USE_MESA -> USE_GL
 2003-11-09 19:04:36 +00:00
Eric Anholt
b1e4f642e5 LIB_DEPENDS on libglut for libglut rather than soon-to-disappear Mesa3. 2003-11-07 20:45:29 +00:00
Adam Weinberger
c479bf51a5 Update to 2.0.7. 2003-11-07 16:50:32 +00:00
Eric Anholt
e4a14e5699 Mark BROKEN: distfile has changed. 2003-11-06 23:15:06 +00:00
James E. Housley
0e9cd423cb ${MASTER_SITES} are slow. This patch adds a mirror site to help 
fetch work more frequently.  This patch patches the Makefile from
PORTSDIR}/biology

PR:		58130
Submitted by:	MAINTAINER
 2003-11-06 11:32:30 +00:00
Max Khon
14988eebf4 Make this port use wxgtk 2.4.2. 2003-11-05 10:26:00 +00:00
Max Khon
cfe5492411 Chase wxgtk library name (and version) change. 2003-11-04 20:52:58 +00:00
Mark Linimon
43233244ca Pet portlint. 2003-11-03 21:01:28 +00:00
Edwin Groothuis
a27bc39328 Date: Tue, 04 Nov 2003 00:42:55 +0900 
From: Motomichi Matsuzaki <mzaki@e-mail.ne.jp>
Subject: Re: question about FreeBSD ports you maintain

Briefly, I have no time for maintaining ports.
So I wish to leave the maintainer position of these ports:

biology/fastdnaml
textproc/wv

Thanks you for maintaining the FreeBSD system.

                                        Best regards,
					Motomichi Matsuzaki
 2003-11-03 20:44:32 +00:00
Kris Kennaway
09b69954f2 Mark BROKEN (see bento logs). These ports are scheduled for removal 
after Feb 2 2004 if they are still broken at that time and no fixes
have been submitted by PR.
 2003-11-03 03:56:42 +00:00
Edwin Groothuis
df3c9e78bd ports with possibly unreachable MAINTAINERs 
*** addresses that seem to be dead:

PR:		ports/58694
Submitted by:	Oliver Eikemeier <eikemeier@fillmore-labs.com>
 2003-11-02 02:48:08 +00:00
Mark Linimon
817fa652d7 Chased new mastersite per distfile survey. Notified maintainer. 2003-10-26 08:19:46 +00:00
Ying-Chieh Liao
c634b4bb83 utilize SITE_PERL 
PR:		58166
Submitted by:	Cheng-Lung Sung <clsung@dragon2.net>
 2003-10-24 12:05:09 +00:00
Kris Kennaway
d4788043a6 Respect CC and CFLAGS 2003-10-23 00:01:04 +00:00
Sergey A. Osokin
958842c5c6 Cosmetic fix: use %%DOCSDIR%% macro. 
No functionally changes.

Submitted by:	Oleg Karachevtsev <ok@etrust.ru>
A part of PR:	57992
 2003-10-22 09:37:18 +00:00
Kirill Ponomarev
c05d3fc123 - Update to 0.5.2 
PR:		58304
Submitted by:	Clement Laforet <sheepkiller@cultdeadsheep.org>
 2003-10-20 22:41:04 +00:00
Kris Kennaway
19b417918e Don't remove share/java/classes system directory. 2003-10-19 02:26:52 +00:00
Mark Linimon
280fea9546 Fixes the checksum problem, but doesn't fix the port; adds a BROKEN 
line about how it fails.  Some other interested person will have
to take it from here.

PR:		56882
 2003-10-15 23:56:43 +00:00
Akinori MUSHA
586e37458f Update to 0.5.3. 2003-10-14 22:25:59 +00:00
Daichi GOTO
50e96887d2 update biology/nab: 4.5.1 -> 4.5.2 
PR:		57970
Submitted by:	M. L. Dodson <bdodson@scms.utmb.edu> (maintainer)
 2003-10-14 12:18:51 +00:00
Kris Kennaway
c68a93561d BROKEN: Broken pkg-plist 2003-10-13 06:31:57 +00:00
Kris Kennaway
c2b0bb508d BROKEN: Does not fetch 2003-10-12 22:31:49 +00:00
Edwin Groothuis
ec14a6f561 Port update (maintainer): biology/wise 
Fenner's porsurvey show wise no longer available at original
	site.  Original site readme shows it has moved so update
	the MASTER_SITES accordingly.

PR:		ports/57154
Submmited by:	Tony Maher <tonymaher@optushome.com.au>
 2003-09-24 11:32:44 +00:00
Sergey A. Osokin
f37f7775e3 Make portlint(1) happy by changing strip to ${STRIP_CMD} 
Submitted by:	Oleg Karachevtsev <ok@etrust.ru>
PR:		56998
 2003-09-24 09:37:11 +00:00
Edwin Groothuis
bdb4445a67 Update port: biology/gperiodic to 2.0.6 
- Update to version 2.0.6

PR:		 ports/56522
Submitted by:	 KATO Tsuguru <tkato@prontomail.com>
 2003-09-08 06:09:31 +00:00
Edwin Groothuis
ec3cd3ad7f new port:biology/lsysexp 
L-system Explorer is a program used for viewing and creating
	L-system fractals.

	The following features are supported:

	- Over 500 builtin L-systems, arranged into about 20 groups.
	- Ability to create and save custom L-systems and L-system groups.
	- Abilty to save images of L-systems (in PNG or JPEG format).
	- Multiple L-systems can be viewed at the same time.
	- Able to use custom colors and gradients.
	- Can also generate random gradients, or completely random colors.
	- Able to draw using lines, points, or a random combination of both.

PR:		iports/51400
Submitted by:	David Yeske <dyeske@yahoo.com>
 2003-09-03 02:23:23 +00:00
Maho Nakata
17cbc7c345 Silent changes to the port distfile which *not* have significant 
functional differences.
just changing very minor change of documatation, adding very minor
functionality and some cleanup for coding

Submitted by:	bento's log
 2003-09-01 22:00:00 +00:00
Kirill Ponomarev
c101866e9f - Add an end-of-string to each line of the input 
when parsing the input files

PR:		56043
Submitted by:	maintainer
 2003-08-28 04:51:02 +00:00
Akinori MUSHA
0f1f27c54b Update to 0.5.2. 2003-08-22 22:53:54 +00:00
Hye-Shik Chang
c76af54099 Fix build on python2.3 2003-08-20 10:40:37 +00:00
Norikatsu Shigemura
efb928619b o Main modification 
graphics/gd(based on 1.8.4)    -> graphics/gd1
  graphics/gd2(based on 2.0.15)  -> graphics/gd
  graphics/p5-GD(based on 1.41)  -> graphics/p5-GD1
  graphics/p5-GD2(based on 2.07) -> graphics/p5-GD
  japanese/gd                    -> japanese/gd1
  japanese/gd2                   -> japanese/gd
o Include some feature
  WITH_XPM(w/, w/o WITHOUT_X11)
o Chase this modification
o Fix build error [1]

PR:		ports/54540
Submitted by:	Ports Fury
Approved by:	maintainer (blanket)
Reported by:	bento via kris [1]
 2003-08-18 16:15:10 +00:00
Kris Kennaway
736746419e As announced on May 6, remove the broken p5-bioperl-devel port. 2003-08-08 03:31:11 +00:00
Kris Kennaway
616a6528af BROKEN: Checksum mismatch 2003-08-07 09:29:17 +00:00
Hye-Shik Chang
2b12324a99 Fix python version detection routines to cope with python 2.3's 
boolean representation.
 2003-08-01 22:04:57 +00:00
Maho Nakata
636cfee514 Somehow pkg-plist is removed... 
Pointy hat to: myself
 2003-08-01 03:31:42 +00:00
Maho Nakata
c99edb7512 a) Update to 1.7.3 
b) Maintainer timeout:
   This PR is submitted by Thu May 08 07:30:18 PDT 2003
   but no reply from the maintainer.

PR:		51971
Submitted by:	KATO Tsuguru <tkato@prontomail.com> aka Ports Fury
 2003-08-01 03:27:54 +00:00
Maho Nakata
7c5ae7045b Add USE_XLIB=yes to compile 
Submitted by:	kris via bento
 2003-07-31 08:06:09 +00:00
Akinori MUSHA
c78ef63727 Update to 0.5.1. 2003-07-29 06:44:28 +00:00
Maho Nakata
4dd4b89f44 A new port garlic, free molecular viewer and editor, free molecular 
visualization program, protein structure, DNA structure, PDB,
molecular rendering, biological macromolecule.
 2003-07-28 06:38:37 +00:00
Kirill Ponomarev
d5ad075240 - Update to version 2.0.5 
PR:		54899
Submitted by:	KATO Tsuguru <tkato@prontomail.com>
Approved by:	fjoe (mentor) (implicit)
 2003-07-27 16:00:31 +00:00
Maho Nakata
10c43988bd Some clean-up. 
a) ECHO-> ECHO_CMD
b) place of WITH_OPTIMIZED_FLAGS seems to be wrong.
c) fix errors reported from freshports.org
 2003-07-25 22:30:55 +00:00
Maho Nakata
aa86451d35 Duplicated the pre-extract:' and post-build:' 
Submitted by:	Glenn Johnson <gjohnson@srrc.ars.usda.gov>
Pointy hat to:	myself
 2003-07-25 21:19:09 +00:00
Maho Nakata
7a5f7030ac a) Some corrupts with Makefile and pkg-plist. 
b) forgot to notice that drop maintainership to ports@

Submitted by:	Glenn Johnson <gjohnson@srrc.ars.usda.gov>
Pointy hat to:	myself
 2003-07-25 07:19:40 +00:00
Maho Nakata
d0d6c6466b a) Forgot to update distinfo 52498 
b) added LEGAL. author requests no distribution
   except from his FTP site
c) clean-ups for compiler optimization

Submitted by:	Glenn Johnson <gjohnson@srrc.ars.usda.gov>
Pointy hat to:	maho; partially :)
 2003-07-25 02:48:05 +00:00
Maho Nakata
7f03690b18 Update to 0.90 2003-07-24 07:06:17 +00:00
Maho Nakata
efc116207e enhancement, build and install the opengl viewer, moldenogl. 
update to 3.9, not 3.8, which is newer :)

Committed by maintainer timeout:
> Sat Apr  5 17:46:57 EST 2003 - edwin - informed maintainer

PR:		47177
Submitted by:	Glenn Johnson <gjohnson@srrc.ars.usda.gov>
 2003-07-19 04:17:06 +00:00
Maho Nakata
2b7927a921 honor CFLAGS and FFLAGS 
PR:		54396
Submitted by:	Glenn Johnson <gjohnson@srrc.ars.usda.gov>
 2003-07-19 03:58:51 +00:00
Maho Nakata
3c2eb776a2 Maintainer update of biology/tinker port to version 4.0. 
PR:		52498
Submitted by:	Glenn Johnson <gjohnson@srrc.ars.usda.gov>
 2003-07-19 03:48:44 +00:00
Yen-Ming Lee
fb228ea556 Add semi-colons(;) after declare statements that go in the povray scene file 
so that povchem works with povray-3.5.

Maintainer prefer not to depend on ImageMagick since users can use their
favorite picture viewer. display isn't the only one choice.

Drop maintainership.

PR:		54397
Submitted by:	Glenn Johnson <gjohnson@srrc.ars.usda.gov>
Reviewed by:	Chen-hsiung Chan <frankch@waru.life.nthu.edu.tw>
 2003-07-14 06:50:15 +00:00
Norikatsu Shigemura
99a390f50b o Change library name from libgd to libgd1. 
o Do not install everything except headers and libraries
  (to avoid conflicting with graphics/gd2)
o Fix dependency on new libgd1(for many ports).

PR:		ports/54100
Submitted by:	Ports Fury
 2003-07-11 18:16:14 +00:00
Sergey A. Osokin
afa7efcce6 s/NOPORTSDOCS/NOPORTDOCS/ [1] 
Use %%PORTDOCS%%%%DOCSDIR%% in pkg-plist.

PR:		53911 [1]
Approved by:	maintainer
 2003-07-11 11:01:13 +00:00
Daichi GOTO
a1ab1ee112 update biology/nab: 4.4 -> 4.5.1 
PR:		52786
Submitted by:	M. L. Dodson <bdodson@scms.utmb.EDU> (maintainer)
 2003-07-08 11:50:36 +00:00
Akinori MUSHA
9d7ec05179 Update to 0.5.0. 2003-06-26 03:34:44 +00:00
Daichi GOTO
262d632dae update ports/biology/act to latest release (v2) 
PR:		49093
Submitted by:	Fernan Aguero <fernan@iib.unsam.edu.ar>
 2003-06-23 13:37:39 +00:00
Erwin Lansing
9a7422c0c5 - update to 1.83 
- give maintainership to submitter as the old maintainer's
  address bounces

PR:		52054
Submitted by:	Philip M. Gollucci <philip@p6m7g8.com>
Approved by:	maintainer bounces
 2003-06-17 18:39:47 +00:00
Kris Kennaway
93872f18cc Move inclusion of bsd.port.pre.mk later in the file for conditional BROKEN 
tag.  Early inclusion caused problems for some ports, so to be safe I'm
updating all of them.

Pointy hat to:	kris
 2003-06-04 22:43:38 +00:00
Adam Weinberger
0225134607 Assign MAINTAINER to ports@FreeBSD.org. 
PR:		ports/52534
Submitted by:	Christian Brueffer <chris@unixpages.org>
 2003-06-04 18:58:11 +00:00
Tim Vanderhoek
29763acb4a Upgrade to 2003.01.21. Appears to only add some more file export/print 
options.  Additional patches were necessary since the fltk port seems
to have been upgraded and thus also broken this port (which would
been already broken due to the checksum failure).
 2003-05-22 05:59:32 +00:00
Tim Vanderhoek
826bc61d7e Add back the WWW which was inexplicably deleted in a previous 
revision.  Make a few organisational improvements.  However, be
too lazy to move to pkg-message a note that really shouldn't
be necessary for the end user at all.
 2003-05-22 02:44:05 +00:00
Pete Fritchman
2fa167da9b - fix build under gcc 3.3 
- respect CC/CFLAGS

PR:		52013
Submitted by:	maintainer
 2003-05-19 01:48:33 +00:00
Kris Kennaway
257ef67bc8 Back out previous commit, the port was fixed a few days ago. 2003-05-18 21:52:02 +00:00
Kris Kennaway
9c288e873f BROKEN on 5.1: bad C++ 2003-05-18 09:55:25 +00:00
Michael Landin
05b1705af9 - Update to latest release. 
- Better autoconf/automake so patches no longer needed
- Changed dependency. (now wxgtk-devel)

PR:		51741
Submitted by:	maintainer
Approved by: 	roberto(mentor)
 2003-05-14 13:09:11 +00:00
Kris Kennaway
cdb6ec2c28 BROKEN: Broken pkg-plist 2003-05-06 23:36:56 +00:00
Tilman Keskinoz
b2097beda0 Update to 2003.04.21 
PR:		51709
Submitted by:	Tony Maher <tonymaher@optushome.com.au>
 2003-05-05 12:24:08 +00:00
Pete Fritchman
42220eeb24 - unbreak on 4.x: add dependency on gdkpixbuf, fix Makefiles to compile with 
the correct libraries
- add a WITH_OPTIMIZED_CFLAGS knob

PR:		51614
Submitted by:	maintainer
 2003-05-03 18:27:53 +00:00
Maho Nakata
1132a00c6e Updated to 0.8.6. 
Submitted by: M. L. Dodson <bdodson@scms.utmb.EDU>
Pkg-plist by: maho
 2003-05-03 03:45:31 +00:00
Mario Sergio Fujikawa Ferreira
c5e7423b03 Update to 20030425 snapshot 2003-04-25 18:01:46 +00:00
Joe Marcus Clarke
4fb7eb3a61 Remove USE_GNOMENG. 2003-04-18 04:54:11 +00:00
Edwin Groothuis
80f9519693 Update the biology/tinker Makefile so it builds on -current 
PR:		ports/50371
Submitted by:	Glenn Johnson <gjohnson@srrc.ars.usda.gov>
 2003-03-30 06:43:14 +00:00
Christian Weisgerber
3e8676b331 * Fix build with GCC3 (-CURRENT). 
* Honor CXX/CXXFLAGS.
* Use predefined DOCSDIR and EXAMPLESDIR variables.

Approved by:	maintainer timeout
 2003-03-25 12:28:57 +00:00
Ade Lovett
7e52725f2a Clear moonlight beckons. 
Requiem mors pacem pkg-comment,
And be calm ports tree.

E Nomini Patri, E Fili, E Spiritu Sancti.
 2003-03-07 06:14:21 +00:00
Trevor Johnson
5e37fb828f Retire comment file. 2003-03-01 14:34:33 +00:00
Mario Sergio Fujikawa Ferreira
55dc9026c2 Update to 20030227 snapshot 2003-02-28 01:46:50 +00:00
Mario Sergio Fujikawa Ferreira
74740483d0 De-pkg-comment 2003-02-23 19:58:35 +00:00
Akinori MUSHA
57f9198bc7 De-pkg-comment. 2003-02-21 11:08:38 +00:00
Akinori MUSHA
7cc1393a93 De-pkg-comment. 2003-02-20 17:07:10 +00:00
Christian Weisgerber
9de6d7d1a0 Fix install and packaging list. 
Reported by:	kris
 2003-02-18 14:09:17 +00:00
Akinori MUSHA
a4542a306f De-pkg-comment. 2003-02-18 04:24:40 +00:00
Christian Weisgerber
97d4b58c28 Update to 1.83. 
PR:		48264
Submitted by:	David A. Bader <dbader@eece.unm.edu>
 2003-02-15 18:43:14 +00:00
Christian Weisgerber
5eb743da03 * Update to 3.13. 
PR:		48255
Submitted by:	David A. Bader <dbader@eece.unm.edu>

* Also honor CC/CFLAGS.
 2003-02-14 23:21:23 +00:00
Edwin Groothuis
6e497f06be Add dependency on security/p5-Digest-MD5 
Noticed on: bento
 2003-02-13 02:52:13 +00:00
Christian Weisgerber
aeefc83b6c Update to version 0.5.1. 
PR:		48047
Submitted by:	Ports Fury
 2003-02-11 18:13:27 +00:00
Kris Kennaway
1140e88185 Remove gaussian98 
Pointy hat to:	maho
 2003-02-05 09:01:06 +00:00
Maho Nakata
b8c46ab23d Delete biology/gaussian98. Maintain is too hard and 
gray in license
 2003-01-31 22:37:39 +00:00
Akinori MUSHA
4dce26edf6 Update to 0.4.0. 2003-01-29 10:45:59 +00:00
Mario Sergio Fujikawa Ferreira
365028dd1b add '-f' argument to rm so that the script always work even if a 
file is not there

Submitted by:	Frerich Raabe <frerich.raabe@gmx.de>
 2003-01-23 19:27:43 +00:00
Edwin Groothuis
b7eafb33b6 New Port: biology/act 
PR:		ports/35753
Submitted by:	Camson Huynh <chuynh@biolateral.com.au>
 2003-01-16 14:22:59 +00:00
Kris Kennaway
5da5198ae4 Add missing file 2003-01-14 05:30:42 +00:00
Kris Kennaway
ffd4e64c29 Add some missing files 2003-01-14 03:39:21 +00:00
Tilman Keskinoz
d022ce8307 Update to 3.8 
Approved by:	rmiya@cc.hirosaki-u.ac.jp (maintainer)
 2003-01-08 12:05:57 +00:00
Edwin Groothuis
191d7dac5e update biology/babel to properly output mm3 files. 
PR:		ports/42425
Submitted by:	Glenn Johnson <glennpj@charter.net>
 2003-01-03 08:52:41 +00:00
Ying-Chieh Liao
3220806664 upgrade to 3.7 
PR:		44957
Submitted by:	maintainer
 2003-01-02 03:57:58 +00:00
Ying-Chieh Liao
b5041aa484 add missing include 
PR:		46584
Submitted by:	Ports Fury
 2002-12-29 04:44:13 +00:00
Ying-Chieh Liao
c545891882 fix build on -current 
PR:		46459
Submitted by:	Ports Fury
 2002-12-22 12:51:20 +00:00
Mario Sergio Fujikawa Ferreira
88902156b6 Fix typo: distribfold.org -> distributedfolding.org 
Submitted by:	Matt Mills <alpha@vanity.com>
 2002-12-19 18:33:55 +00:00
Mario Sergio Fujikawa Ferreira
df92c7e01b o Update to 20021105 snapshot 
o Depend on compat4x on OSVERSION >= 500000 since these are 4.5-RELEASE
  binaries
o House a copy under MASTER_SITE_LOCAL: the local copy will be
  versioned, developer has yet to be convinced of the advantages
  of distributing versioned files

Approved by:	portmgr (knu)
 2002-12-19 01:17:07 +00:00
Mario Sergio Fujikawa Ferreira
8a51d4351d Mark BROKEN due to "Unknown problem" 
Submitted by:	maintainer
 2002-11-25 02:11:13 +00:00
Ying-Chieh Liao
5f94a921b1 unbroke by upgrade to 20021018 
drop maintainership

PR:		45466
Submitted by:	old maintainer
 2002-11-20 14:03:25 +00:00
Ying-Chieh Liao
545bf7ae46 add treepuzzle 5.1 
Maximum likelihood phylogeny reconstruction using quartets

PR:		45241
Submitted by:	Jan Lentfer <lentferj@neslonek.bio.tu-darmstadt.de>
 2002-11-20 08:54:10 +00:00
Maho Nakata
ce7f2b93cc 1. add a missing dependency on png and unbreak. 
2. change e-mail address of maho.
 2002-11-19 23:01:49 +00:00
Mario Sergio Fujikawa Ferreira
f0a1969d34 o Rollback PORTCOMMENT modifications while this feature's implementation 
is better studied
o Turn PORTCOMMENT variable in Makefile back into pkg-comment files

Approved by:	kris (portmgr hat),
		portmgr, re (silence)
 2002-11-10 16:48:51 +00:00
Tilman Keskinoz
7599b3caa6 Update WWW 2002-11-07 23:13:11 +00:00
Edwin Groothuis
2e9537a130 Updated to fix problems as stated in PR ports/42915 
PR:		ports/42915
Submitted by:	Tony Maher <tonym@biolateral.com.au>
 2002-11-07 13:45:17 +00:00
Adam Weinberger
c62fe39354 Fix PORTCOMMENTs that were killing INDEX builds. 
105 pointy hats to:	me
Approved by:		pat
 2002-11-07 03:10:58 +00:00
Adam Weinberger
d9611f9375 Use PORTCOMMENT in the Makefile, and whack the pkg-comment. 
Approved by:	pat
 2002-11-06 22:47:41 +00:00
Edwin Groothuis
f4aab86d3c Modify replace RE to match syntax of sed now ("\)" -> ")" 
Noticed by: bento
 2002-11-05 01:44:12 +00:00
Edwin Groothuis
37f2224fa6 PERL -> REINPLACE 
And some ports have USE_PERL5=yes now.
 2002-11-04 05:46:38 +00:00
Edwin Groothuis
6097f03e91 PERL -> REINPLACE 
Noticed on: bento
 2002-11-04 02:35:01 +00:00
Edwin Groothuis
558f2d386c PERL -> REINPLACE 
Noticed on: bento
 2002-11-04 01:56:21 +00:00
Edwin Groothuis
c3eddc377e Port needs perl to build. 
Seen on: bento
 2002-11-04 01:47:57 +00:00
Edwin Groothuis
6cf3dcffa8 Make biology/avida building on -current again 
PR:		ports/44819
Submitted by:	Oliver Lehmann <lehmann@ans-netz.de>
Approved by:	Jeremy Karlson <karlj000@unbc.ca>
 2002-11-03 23:40:02 +00:00
Patrick Li
516d846c10 Add another entry for MASTER_SITES and unbreak with latest version of bison 
PR:		ports/44711
Submitted by:	maintainer
 2002-10-29 22:27:17 +00:00
Tom Hukins
2284d53b36 Update CATEGORIES as per ports/44331. 
While I'm here, remove unnecessary whitespace spotted by portlint.

PR:		ports/44331
Submitted by:	Martin Klaffenboeck <martin.klaffenboeck@gmx.at>
 2002-10-21 10:59:11 +00:00
Mario Sergio Fujikawa Ferreira
ee31677712 o Update to snapshot 20021015 
o Fix an issue with the startup scripts
 2002-10-19 18:19:50 +00:00
Kris Kennaway
9883a05f7e Fix dependency on wxgtk 2002-10-19 09:50:53 +00:00
Akinori MUSHA
744ecfac33 CC, CXX, CFLAGS, PTHREAD_CFLAGS and PTHREAD_LIBS may contain `/' in 
them when using a non-default compiler/linker, so do not use `/' as
delimiter for s///. (I picked `|' instead)
 2002-10-10 12:59:36 +00:00
Mario Sergio Fujikawa Ferreira
72353480ab Connect distribfold to build after moving it from misc category 
Prompted by:	kris,
		Adam Weinberger <adam@vectors.cx>,
		Fernan Aguero <fernan@iib.unsam.edu.ar>,
		others
 2002-10-07 03:07:59 +00:00
Mario Sergio Fujikawa Ferreira
e6797a6f48 o New port distribfold version 0.1: distribfold.org distributed protein 
folding project
o One can start multiple instances of this port. Just install it
  using WITH_NCPU
 2002-10-07 03:07:13 +00:00
Akinori MUSHA
8dc9b4eb8b Use RUBY_MOD*. 2002-10-06 21:08:30 +00:00
Johann Visagie
f4e518bd9b - Unbreak fetching of distfiles. (Needs update as soon as freeze is over.) 
Submitted by:	kris, bento
Approved by:	Implicitly by first rule of ports freeze, I hope!
 2002-09-27 08:58:19 +00:00
Ying-Chieh Liao
460fa2aa9e add forgotten "USE_REINPLACE=yes" 
Submitted by:	maintainer
 2002-09-21 14:56:18 +00:00
Ying-Chieh Liao
6c06a9090d upgrade to 20020426 
PR:		39357
Submitted by:	maintainer
 2002-09-21 06:59:28 +00:00
Kris Kennaway
dc1db85872 BROKEN: Does not fetch 2002-09-20 20:45:20 +00:00
Kris Kennaway
ce1e6ce51e BROKEN: Does not build 2002-09-19 02:45:38 +00:00
Ying-Chieh Liao
47be6d4a10 add primer3 0.9 
Primer3 helps to choose primers for PCR reactions

PR:		35298
Submitted by:	Tony Maher <tonym@biolateral.com.au>
 2002-09-17 15:31:09 +00:00
Dirk Meyer
f593f06ed2 Flip is used to find/translate orfs. 
WWW: ftp://megasun.bch.umontreal.ca/pub/flip/
PR:		35332
Submitted by:	tonym@biolateral.com.au
 2002-09-10 14:04:06 +00:00
Dirk Meyer
ce85742f4f "Wise2 is package that is focused on comparing DNA sequences at 
the level of its conceptual translation, regardless of sequencing
error and introns."
 2002-09-10 13:58:40 +00:00
Maxim Sobolev
4715163d34 Chase new name of wxgtk shared library. 2002-09-09 14:21:08 +00:00
Kris Kennaway
8fa8041fe5 Remove USE_NEWGCC, which is no longer supported or required. 
Submitted by:	Tilman Linneweh <tilman@arved.de>
PR:		ports/40571
 2002-08-31 02:38:29 +00:00
Mario Sergio Fujikawa Ferreira
5dec55380d Deploy USE_GNOMENG infrastructure 
PR:		42187
Submitted by:	Edwin Groothuis <edwin@mavetju.org>
 2002-08-30 12:59:40 +00:00
Hye-Shik Chang
164aad7a64 o Fix examples directory path which is changed in last revision. 
Submitted by:	Glenn Johnson <glennpj@charter.net>
 2002-08-26 05:13:28 +00:00
Hye-Shik Chang
485faf1e84 o Fix RUN_DEPENDS path (PMW -> Pmw) 
o Fix DISTNAME which was broken by previous commit.
o Install example files

PR:		41977
Submitted by:	Glenn Johnson <glennpj@charter.net>
Approved by:	maintainer
 2002-08-25 08:37:53 +00:00
Kris Kennaway
56881e441f Prefer <limits.h> over <values.h> as the latter has been removed from 
-current.

Noticed by:	bento
 2002-08-23 03:36:33 +00:00
Hye-Shik Chang
0aedf7e003 o Remove redundant dependency on py-tkinter. 
o Bump PORTREVISION that I've missed on last commit.

Submitted by:	Glenn Johnson <glennpj@charter.net>
 2002-08-22 04:20:19 +00:00
Hye-Shik Chang
bf0c82e18c Add a dependecy to x11-toolkits/pmw 
PR:		41857
Submitted by:	Glenn Johnson <gjohnson@srrc.ars.usda.gov>
Approved by:	maintainer
 2002-08-22 03:35:32 +00:00
Mario Sergio Fujikawa Ferreira
e3aab5688e New port L-Breeder version 1.0: Allows you to display and breed 
L-system forms

PR:		38725
Submitted by:	David Yeske <dyeske@yahoo.com>
 2002-08-21 00:01:59 +00:00
Christian Weisgerber
9f15c68bdd - Support CXXFLAGS properly. 
- Do not install .la file.

PR:		41732
Submitted by:	Ports Fury
 2002-08-17 19:16:55 +00:00
Christian Weisgerber
5852631db9 Update to version 3.6.a3. 
PR:		41412
Submitted by:	David A. Bader <dbader@eece.unm.edu>

Additional clean-up:
* Respect CC, CFLAGS, X11BASE.
* Use versioned DIST_SUBDIR.

Approved by:	maintainer
 2002-08-13 16:07:45 +00:00
Hye-Shik Chang
dc8e3f8160 Add pymol 0.82, Free and Open-Source molecular modeling system. 
PR:		40694
Submitted by:	Nakata Maho <chat95@mbox.kyoto-inet.or.jp>
 2002-08-13 11:53:43 +00:00