Commit graph

28 commits

Author SHA1 Message Date
Sunpoet Po-Chuan Hsieh
251e56f6da Update *_DEPENDS
- Bump PORTREVISION for dependency change

The circular dependency among p5-Bio-Cluster, p5-Bio-DB-NCBIHelper, p5-Bio-Variation and this port has been resolved in p5-Bio-Variation 1.7.5 update.
2020-01-08 18:36:30 +00:00
Sunpoet Po-Chuan Hsieh
6356c6acbc Install Bio::SeqIO::entrezgene
- Bump PORTREVISION for package change
- Take maintainership

Bio::SeqIO::entrezgene has been removed from BioPerl since 1.7.3.
2019-12-08 16:57:13 +00:00
Sunpoet Po-Chuan Hsieh
b509e11e8e Update to 1.73
Changes:	https://metacpan.org/changes/distribution/Bio-ASN1-EntrezGene
2018-10-10 10:23:10 +00:00
Dag-Erling Smørgrav
9dff352320 Fix every instance of RUN_DEPENDS:=${BUILD_DEPENDS} in p5 ports, except
for where it resulted in a change in output from build-depends-list or
run-depends-list.

Approved by:	portmgr (adamw)
2018-10-06 13:06:42 +00:00
Sunpoet Po-Chuan Hsieh
ad4f267b7a Update WWW
search.cpan.org is shutting down.
It will redirect to metacpan.org after June 25, 2018.

With hat:	perl
2018-05-27 20:15:16 +00:00
Mathieu Arnold
cb41fc6623 Fix license information for portgs that use "the same license as Perl".
Sponsored by:	Absolight
2017-09-15 08:58:46 +00:00
Sunpoet Po-Chuan Hsieh
f14315d775 - Add LICENSE
- Add NO_ARCH
- Bump PORTREVISION for biology/p5-bioperl renaming
2016-12-18 15:25:13 +00:00
Wen Heping
22009c121e - Update to 1.72
Changes: http://search.cpan.org/~cjfields/Bio-ASN1-EntrezGene-1.72/
2016-09-11 05:26:01 +00:00
Dmitry Marakasov
1d1f878054 - Fix trailing whitespace in pkg-descrs, categories [a-f]*
Approved by:	portmgr blanket
2016-05-19 10:21:23 +00:00
Mathieu Arnold
7f4572eae4 Remove ${PORTSDIR}/ from dependencies, Mk and categories a, b, and c.
With hat:	portmgr
Sponsored by:	Absolight
2016-04-01 13:29:15 +00:00
Adam Weinberger
34ed372f38 Start removing MASTER_SITE_SUBDIR=CPAN:username where possible. The
downside to having this set is that portscout cannot find new releases
when the username changes (which happens often in large projects with
multiple maintainers).
2015-06-24 15:16:23 +00:00
Adam Weinberger
03f1abf704 Reassign biology/ perl modules to perl@.
While here:

Regenerate p5-AcePerl's patches using makepatch.
Make p5-Bio-ASN1-EntrezGene depend on p5-bioperl, instead of the
other way around. Bump PORTREVISION on those two ports.
2015-05-08 18:12:36 +00:00
John Marino
1402a5b211 biology/p5-Bio-ASN1-EntrezGene: bump PORTEPOCH
Apparently in some world I don't live in 1.091 > 1.70
pkg needs this port's epoch to be bumped

reported by: 	wen
2015-04-11 15:19:03 +00:00
John Marino
ddfbdcb255 biology/p5-Bio-ASN1-EntrezGene: Upgrade 1.09 => 1.70 to unbreak
While here, reset the port.  The last time the maintainer was seen was
in 2005, when the port was created.  Also, rewrap the package description
such that it keeps within 75 characters; also move the url so it won't
wrap across lines.
2015-04-11 15:00:12 +00:00
Baptiste Daroussin
f4e1a5b6b2 Mark as broken unfetchable ports 2015-04-05 17:55:35 +00:00
Mathieu Arnold
eee58d187e Change the way Perl modules are installed, update the default Perl to 5.18.
Before, we had:

  site_perl :           lib/perl5/site_perl/5.18
  site_perl/perl_arch : lib/perl5/site_perl/5.18/mach
  perl_man3 :           lib/perl5/5.18/man/man3

Now we have:

  site_perl : lib/perl5/site_perl
  site_arch : lib/perl5/site_perl/mach/5.18
  perl_man3 : lib/perl5/site_perl/man/man3

Modules without any .so will be installed at the same place regardless of the
Perl version, minimizing the upgrade when the major Perl version is changed.
It uses a version dependent directory for modules with compiled bits.

As PERL_ARCH is no longer needed in plists, it has been removed from
PLIST_SUB.

The USE_PERL5=fixpacklist keyword is removed, the .packlist file is now
always removed, as is perllocal.pod.

The old site_perl and site_perl/arch directories have been kept in the
default Perl @INC for all Perl ports, and will be phased out as these old
Perl versions expire.

PR:		194969
Differential Revision:	https://reviews.freebsd.org/D1019
Exp-run by:	antoine
Reviewed by:	perl@
Approved by:	portmgr
2014-11-26 13:08:24 +00:00
Baptiste Daroussin
99a3e8559c Cleanup plist 2014-10-20 07:10:48 +00:00
Adam Weinberger
a84c115a09 Convert a bunch of EXTRACT_SUFX=... into USES=tar:...
Approved by:	portmgr (not really, but touches unstaged ports)
2014-07-29 19:11:51 +00:00
Andrej Zverev
f09fca2358 - add stage support
Approved by:	portmgr (blanket infrastructure)
2014-01-06 09:57:19 +00:00
Baptiste Daroussin
7055ff02f1 Add NO_STAGE all over the place in preparation for the staging support (cat: biology) 2013-09-20 15:55:44 +00:00
Andrej Zverev
6f12870030 - convert to the new perl5 framework
Approved by:	portmgr (bapt@, blanket)
2013-09-07 07:44:26 +00:00
Eitan Adler
7e3b32fff8 - remove maintainer tags from pkg-descr
Approved by:	portmgr
Approved by:	bapt (mentor)
2011-10-22 23:50:23 +00:00
Martin Wilke
a9481afc8a - Get Rid MD5 support 2011-03-19 12:38:54 +00:00
Marcelo Araujo
4aaab89f57 - Take advantage of CPAN macro from bsd.sites.mk, change ${MASTER_SITE_PERL_CPAN} to CPAN.
PR:		ports/122674
Submitted by:	Philip M. Gollucci <pgollucci@p6m7g8.com>
Reworked by:	araujo (myself)
Approved by:	portmgr (pav)
2008-04-17 14:30:31 +00:00
Mark Linimon
9839011ec3 Welcome bsd.perl.mk. Add support for constructs such as USE_PERL5=5.8.0+.
Drop support for antique perl.

Work done by:	gabor
Sponsored by:	Google Summer of Code 2007
Hat:		portmgr
2007-09-08 01:12:10 +00:00
Edwin Groothuis
acd87b4ad8 SHA256ify
Approved by:    krion@
2006-01-22 08:34:46 +00:00
Edwin Groothuis
913a5a5cba Replace ugly "@unexec rmdir %D... 2>/dev/null || true" with @dirrmtry
Approved by:    krion@
PR:             ports/88711 (related)
2006-01-22 01:29:46 +00:00
Emanuel Haupt
2cb934bb50 Add p5-Bio-ASN1-EntrezGene, a Regular expression-based Perl Parser for
NCBI Entrez Gene.

PR:		87423
Submitted by:	Mauricio Herrera Cuadra <mauricio@arareko.net>
Approved by:	novel (mentor) (implicit)
2005-10-15 20:09:50 +00:00