| .. |
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abyss
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biology/abyss: Update 2.3.5 → 2.3.7
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2023-07-22 01:55:01 -07:00 |
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ad2vcf
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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artemis
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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atac-seq
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biology/atac-seq: Add curl to metaport deps
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2023-07-28 09:35:04 -05:00 |
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augustus
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biology/augustus: Fix build with llvm16
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2023-08-06 23:53:03 +02:00 |
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avida
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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babel
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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bamtools
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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bamutil
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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barrnap
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biology/barrnap: Update descr
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2022-11-24 19:12:18 -08:00 |
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bbmap
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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bcf-score
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biology/bcf-score: Unbreak build with clang 16
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2023-07-16 08:19:06 -05:00 |
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bcftools
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biology/bcftools: Update to 1.17
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2023-02-24 17:30:58 -06:00 |
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bedtools
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biology/bedtools: Update to 2.31.0
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2023-04-28 20:03:07 -05:00 |
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bfc
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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bifrost
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biology/bifrost: Control -march via CPUTYPE make variable
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2023-08-12 09:38:47 -05:00 |
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bio-mocha
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biology/bio-mocha: Update to 1.16
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2023-01-05 17:21:03 -06:00 |
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bioawk
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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biococoa
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audio/opus: bump consumers after update to 1.4
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2023-04-25 17:17:15 +02:00 |
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biolibc
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biology/biolibc: Update to 0.2.5
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2023-08-11 15:35:11 -05:00 |
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biolibc-tools
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biology/biolibc-tools: Update to 0.1.4.9
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2023-08-11 15:40:49 -05:00 |
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bioparser
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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biosig
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biology/{,py-}biosig: Update 2.5.0 → 2.5.2
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2023-07-19 01:17:37 -07:00 |
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biosoup
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biology/biosoup: Update 0.10.0-2 → 0.11.0
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2023-05-19 00:54:16 -07:00 |
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biostar-tools
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audio/opus: bump consumers after update to 1.4
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2023-04-25 17:17:15 +02:00 |
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bolt-lmm
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*/*: bump all direct Boost cunsumers
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2023-04-27 21:25:55 +03:00 |
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bowtie
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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bowtie2
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biology/bowtie2: Update to 2.5.1
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2023-01-21 16:30:48 -06:00 |
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btllib
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biology/btllib: New port: Bioinformatics Technology Lab common code library
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2023-07-21 15:24:04 -07:00 |
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bwa
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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canu
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biology/canu: Fix build with llvm16
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2023-07-20 19:42:34 +02:00 |
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cd-hit
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biology/cd-hit: allow to build without GCC on libomp-less systems
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2023-08-12 03:37:47 +02:00 |
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cdbfasta
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biology/cdbfasta: Update to 2023.07.10
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2023-07-11 10:40:27 -05:00 |
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checkm
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all: remove explicit versions in USES=python for "3.x+"
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2023-06-27 21:34:34 +02:00 |
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chip-seq
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biology/chip-seq: Metaport for ChIP-Seq analysis
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2023-06-14 16:23:37 -05:00 |
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clustal-omega
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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clustalw
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biology/clustalw: Unbreak build for clang 16
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2023-07-15 18:18:42 -05:00 |
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cufflinks
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*/*: bump all direct Boost cunsumers
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2023-04-27 21:25:55 +03:00 |
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cytoscape
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biology/cytoscape: Broken on armv6, armv7
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2022-12-10 23:41:04 -08:00 |
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ddocent
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*: Bump PORTREVISIONs for math/mpc update to 1.3.1
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2023-04-23 09:09:58 +00:00 |
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diamond
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biology/diamond: Update to 2.1.8
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2023-07-08 00:45:48 -03:00 |
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dsr-pdb
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*/*: bump all direct Boost cunsumers
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2023-04-27 21:25:55 +03:00 |
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edlib
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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emboss
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biology/emboss: Ignore with mysql 8.0
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2023-02-01 04:39:38 -06:00 |
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erminej
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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exonerate
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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fasda
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biology/fasda: Update to 0.1.4
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2023-08-11 15:39:06 -05:00 |
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fasta
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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fasta3
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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fastahack
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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fastdnaml
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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fastool
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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fastp
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biology/fastp: Update to 0.23.4
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2023-05-31 10:40:00 -05:00 |
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fastq-trim
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biology/fastq-trim: Update to 0.1.2
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2022-12-11 15:24:05 -06:00 |
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fastqc
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biology/fastqc: Update to 0.12.1
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2023-03-04 18:17:20 -06:00 |
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fasttree
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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fastx-toolkit
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biology/fastx-toolkit: Unbreak build on 14-CURRENT
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2023-03-07 11:28:13 -06:00 |
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figtree
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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flash
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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fluctuate
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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freebayes
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biology/freebayes: Drop redundant tabixpp dep
|
2023-01-22 10:42:34 -06:00 |
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garlic
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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gatk
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biology/gatk: Update 4.3.0.0 → 4.4.0.0
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2023-06-04 15:02:58 -07:00 |
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gcta
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*: Bump PORTREVISIONs for math/mpc update to 1.3.1
|
2023-04-23 09:09:58 +00:00 |
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gemma
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*: Bump PORTREVISIONs for math/mpc update to 1.3.1
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2023-04-23 09:09:58 +00:00 |
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generand
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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gff2ps
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biology/gff2ps: drop maintainership
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2023-05-21 16:20:36 +00:00 |
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gffread
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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gmap
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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gperiodic
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accessibility/at-spi2-core: update to 2.46.0
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2023-03-02 06:23:10 +01:00 |
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graphlan
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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groopm
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all: remove explicit versions in USES=python for "3.x+"
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2023-06-27 21:34:34 +02:00 |
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haplohseq
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biology/haplohseq: Fix build on FreeBSD 14
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2023-07-09 11:37:39 -05:00 |
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hhsuite
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*: Bump PORTREVISIONs for math/mpc update to 1.3.1
|
2023-04-23 09:09:58 +00:00 |
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hisat2
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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hmmer
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all: remove explicit versions in USES=python for "3.x+"
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2023-06-27 21:34:34 +02:00 |
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htslib
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biology/htslib: fix build on armv7
|
2023-04-18 23:55:29 +02:00 |
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hyphy
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biology/hyphy: Update to 2.5.52
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2023-08-09 14:39:17 -03:00 |
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igv
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audio/opus: bump consumers after update to 1.4
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2023-04-25 17:17:15 +02:00 |
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infernal
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all: remove explicit versions in USES=python for "3.x+"
|
2023-06-27 21:34:34 +02:00 |
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iolib
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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iqtree
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*: Bump PORTREVISIONs for math/mpc update to 1.3.1
|
2023-04-23 09:09:58 +00:00 |
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jalview
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biology/jalview: Fix build by using gradle-7.6.1 instead of gradle-8.0.1
|
2023-06-18 02:58:53 -07:00 |
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jellyfish
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biology/jellyfish: Bump PORTREVISION for biology/htslib update
|
2023-01-05 19:24:44 -06:00 |
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kallisto
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biology/kallisto: Clean up build
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2023-07-24 10:44:58 -05:00 |
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kmcp
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all: Bump PORTREVISION after lang/go{119,120} update
|
2023-08-04 09:24:50 -05:00 |
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lamarc
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biology/lamarc: Mark BROKEN on 14
|
2023-08-18 08:57:13 +02:00 |
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libbigwig
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biology/libbigwig: Update 0.4.6 → 0.4.7
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2023-07-17 00:09:00 -07:00 |
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libcombine
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biology/libcombine: Fix build with libsbml 5.20.0
|
2023-05-27 12:24:05 +08:00 |
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libgff
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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libgtextutils
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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libneurosim
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all: remove explicit versions in USES=python for "3.x+"
|
2023-06-27 21:34:34 +02:00 |
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libnuml
|
Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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libsbml
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all: remove explicit versions in USES=python for "3.x+"
|
2023-06-27 21:34:34 +02:00 |
|
libsedml
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biology/libsedml: Fix build with libsbml 5.20.0
|
2023-05-27 12:24:05 +08:00 |
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linux-foldingathome
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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locarna
|
biology/locarna: Fix tests
|
2023-07-17 09:22:42 -07:00 |
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mafft
|
Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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mapm3
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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mashmap
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biology/mashmap: Broken on i386; Fix build on other architectures by using NATIVE option
|
2023-07-19 11:26:06 -07:00 |
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megahit
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biology/megahit: Add cmake patch to respect ports build flags
|
2022-11-24 08:10:13 -06:00 |
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metaeuk
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biology/metaeuk: Add NATIVE option
|
2023-07-14 17:31:14 -07:00 |
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migrate
|
Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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minimap2
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biology/minimap2: Update to 2.25
|
2023-04-29 09:53:40 -05:00 |
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mmseqs2
|
Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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molden
|
*: Bump PORTREVISIONs for math/mpc update to 1.3.1
|
2023-04-23 09:09:58 +00:00 |
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mothur
|
biology/mothur: Fix build on 14
|
2023-08-18 08:57:12 +02:00 |
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mrbayes
|
Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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mummer
|
Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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muscle
|
Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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ncbi-blast+
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all: remove explicit versions in USES=python for "3.x+"
|
2023-06-27 21:34:34 +02:00 |
|
ncbi-cxx-toolkit
|
graphics/proj: Update to 9.2.1
|
2023-07-26 21:58:55 +02:00 |
|
ncbi-entrez-direct
|
all: Bump PORTREVISION after lang/go{119,120} update
|
2023-08-04 09:24:50 -05:00 |
|
ncbi-toolkit
|
*/*: Bump jpeg-turbo users treewide
|
2023-07-28 19:13:17 +02:00 |
|
ncbi-vdb
|
*: Bump PORTREVISIONs for math/mpc update to 1.3.1
|
2023-04-23 09:09:58 +00:00 |
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ngs-sdk
|
biology/ngs-sdk: Update 2.11.2 → 3.0.1
|
2023-06-26 15:51:40 -07:00 |
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p5-AcePerl
|
Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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p5-Bio-ASN1-EntrezGene
|
Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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p5-Bio-Cluster
|
Remove WWW entries moved into port Makefiles
|
2022-09-07 23:58:51 +02:00 |
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p5-Bio-Coordinate
|
Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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p5-Bio-Das
|
Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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p5-Bio-Das-Lite
|
Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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p5-Bio-DB-EMBL
|
Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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p5-Bio-DB-NCBIHelper
|
Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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p5-Bio-FeatureIO
|
Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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p5-Bio-GFF3
|
Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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p5-Bio-Glite
|
Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
|
p5-Bio-Graphics
|
Remove WWW entries moved into port Makefiles
|
2022-09-07 23:58:51 +02:00 |
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p5-Bio-MAGETAB
|
Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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p5-Bio-NEXUS
|
Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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p5-Bio-Phylo
|
Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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p5-Bio-SCF
|
Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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p5-Bio-Variation
|
Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
|
p5-BioPerl
|
Remove WWW entries moved into port Makefiles
|
2022-09-07 23:58:51 +02:00 |
|
p5-BioPerl-Run
|
Remove WWW entries moved into port Makefiles
|
2022-09-07 23:58:51 +02:00 |
|
p5-transdecoder
|
p5-transdecoder: Update to 5.7.1
|
2023-08-05 15:58:40 -05:00 |
|
p5-TrimGalore
|
biology/p5-TrimGalore: Fix build
|
2023-08-05 22:05:05 +02:00 |
|
paml
|
biology/paml: Update to 4.10.7
|
2023-07-08 00:46:53 -03:00 |
|
pbbam
|
biology/pbbam: Bump PORTREVISION for biology/htslib update
|
2023-01-05 19:25:09 -06:00 |
|
pbseqan
|
Remove WWW entries moved into port Makefiles
|
2022-09-07 23:58:51 +02:00 |
|
peak-classifier
|
biology/peak-classifier: Update to 0.1.4.11
|
2023-08-11 15:44:14 -05:00 |
|
pear-merger
|
Remove WWW entries moved into port Makefiles
|
2022-09-07 23:58:51 +02:00 |
|
phrap
|
Remove WWW entries moved into port Makefiles
|
2022-09-07 23:58:51 +02:00 |
|
phred
|
Remove WWW entries moved into port Makefiles
|
2022-09-07 23:58:51 +02:00 |
|
phyml
|
biology/phyml: fix build on non-x86
|
2023-05-08 10:25:50 +02:00 |
|
picard-tools
|
*/*: Refactor java/openjdk7 removal
|
2023-04-04 13:10:53 -05:00 |
|
plink
|
*: Bump PORTREVISIONs for math/mpc update to 1.3.1
|
2023-04-23 09:09:58 +00:00 |
|
pooler
|
biology/pooler: update to 1.86
|
2022-12-19 08:56:15 +01:00 |
|
primer3
|
biology/primer3: Fix build with llvm16
|
2023-08-05 20:55:50 +02:00 |
|
prodigal
|
biology/prodigal: Update 2.6.3-7 → 2.6.3-16
|
2023-07-22 00:37:33 -07:00 |
|
prodigy-lig
|
all: remove explicit versions in USES=python for "3.x+"
|
2023-06-27 21:34:34 +02:00 |
|
protomol
|
*/*: Bump jpeg-turbo users treewide
|
2023-07-28 19:13:17 +02:00 |
|
psi88
|
*: Bump PORTREVISIONs for math/mpc update to 1.3.1
|
2023-04-23 09:09:58 +00:00 |
|
py-bcbio-gff
|
biology/py-bcbio-gff: Update to 0.7.0
|
2023-03-16 17:32:06 -05:00 |
|
py-biom-format
|
all: remove explicit versions in USES=python for "3.x+"
|
2023-06-27 21:34:34 +02:00 |
|
py-biopython
|
all: remove explicit versions in USES=python for "3.x+"
|
2023-06-27 21:34:34 +02:00 |
|
py-biosig
|
biology/{,py-}biosig: Update 2.5.0 → 2.5.2
|
2023-07-19 01:17:37 -07:00 |
|
py-bx-python
|
all: remove explicit versions in USES=python for "3.x+"
|
2023-06-27 21:34:34 +02:00 |
|
py-crossmap
|
all: remove explicit versions in USES=python for "3.x+"
|
2023-06-27 21:34:34 +02:00 |
|
py-cutadapt
|
all: remove explicit versions in USES=python for "3.x+"
|
2023-06-27 21:34:34 +02:00 |
|
py-deeptools
|
biology/py-deeptools: Update to 3.5.2
|
2023-06-19 07:09:17 -05:00 |
|
py-deeptoolsintervals
|
*/*: rename CHEESESHOP to PYPI in MASTER_SITES
|
2023-01-11 18:58:34 +03:00 |
|
py-dna-features-viewer
|
*: Bump PORTREVISIONs for math/mpc update to 1.3.1
|
2023-04-23 09:09:58 +00:00 |
|
py-dnaio
|
all: remove explicit versions in USES=python for "3.x+"
|
2023-06-27 21:34:34 +02:00 |
|
py-ete3
|
all: remove explicit versions in USES=python for "3.x+"
|
2023-06-27 21:34:34 +02:00 |
|
py-Genesis-PyAPI
|
biology/py-Genesis-PyAPI: Add NO_ARCH
|
2023-08-01 00:42:07 +08:00 |
|
py-gffutils
|
all: remove explicit versions in USES=python for "3.x+"
|
2023-06-27 21:34:34 +02:00 |
|
py-goatools
|
all: remove explicit versions in USES=python for "3.x+"
|
2023-06-27 21:34:34 +02:00 |
|
py-gtfparse
|
all: remove explicit versions in USES=python for "3.x+"
|
2023-06-27 21:34:34 +02:00 |
|
py-hits
|
all: remove explicit versions in USES=python for "3.x+"
|
2023-06-27 21:34:34 +02:00 |
|
py-htseq
|
biology/py-htseq: Update to 2.0.4
|
2023-08-05 11:40:26 -05:00 |
|
py-libnuml
|
biology/py-libnuml: Allow build with swig 4.1.0+
|
2023-04-19 02:05:12 +08:00 |
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py-libsedml
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biology/py-libsedml: Allow build with swig 4.1.0+
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2023-04-19 02:05:12 +08:00 |
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py-loompy
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all: remove explicit versions in USES=python for "3.x+"
|
2023-06-27 21:34:34 +02:00 |
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py-macs2
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biology/py-macs2: Update to 2.2.9.1
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2023-08-06 13:17:52 -05:00 |
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py-mrcfile
|
*: Bump PORTREVISIONs for math/mpc update to 1.3.1
|
2023-04-23 09:09:58 +00:00 |
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py-multiqc
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biology/py-multiqc: Update to 1.15
|
2023-08-05 11:18:37 -05:00 |
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py-ont-fast5-api
|
*: Bump PORTREVISIONs for math/mpc update to 1.3.1
|
2023-04-23 09:09:58 +00:00 |
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py-orange3-bioinformatics
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biology/py-orange3-bioinformatics: Change RUN_DEPENDS from py-requests-cache to py-requests-cache0
|
2023-08-01 00:42:07 +08:00 |
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py-orange3-single-cell
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biology/py-orange3-single-cell: Add NO_ARCH
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2023-08-01 00:42:07 +08:00 |
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py-pandas-charm
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all: remove explicit versions in USES=python for "3.x+"
|
2023-06-27 21:34:34 +02:00 |
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py-py2bit
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*/*: rename CHEESESHOP to PYPI in MASTER_SITES
|
2023-01-11 18:58:34 +03:00 |
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py-pybigwig
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biology/py-pybigwig: Update to 0.3.21
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2023-04-01 16:10:15 -05:00 |
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py-pyfaidx
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all: remove explicit versions in USES=python for "3.x+"
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2023-06-27 21:34:34 +02:00 |
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py-pyrodigal
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all: remove explicit versions in USES=python for "3.x+"
|
2023-06-27 21:34:34 +02:00 |
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py-pysam
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all: remove explicit versions in USES=python for "3.x+"
|
2023-06-27 21:34:34 +02:00 |
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py-PySCeS
|
biology/py-PySCeS: Update 1.1.0 → 1.1.1
|
2023-07-25 23:20:25 -07:00 |
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py-python-libsbml
|
biology/py-python-libsbml: Use CMAKE_BUILD_PARALLEL_LEVEL env var for parallelization
|
2023-07-26 00:04:04 -07:00 |
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py-pywgsim
|
*/*: rename CHEESESHOP to PYPI in MASTER_SITES
|
2023-01-11 18:58:34 +03:00 |
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py-resdk
|
devel/py-setuptools: convert individual consumers to ${PY_SETUPTOOLS}
|
2023-07-17 20:53:09 -04:00 |
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py-scikit-bio
|
biology/py-scikit-bio: Update 0.5.8 → 0.5.9
|
2023-08-03 00:02:05 -07:00 |
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py-valerius
|
biology/py-valerius: New port: Python bioinformatics tools
|
2022-10-03 21:06:22 -07:00 |
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py-xenaPython
|
all: remove explicit versions in USES=python for "3.x+"
|
2023-06-27 21:34:34 +02:00 |
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pyfasta
|
all: remove explicit versions in USES=python for "3.x+"
|
2023-06-27 21:34:34 +02:00 |
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python-nexus
|
all: remove explicit versions in USES=python for "3.x+"
|
2023-06-27 21:34:34 +02:00 |
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rainbow
|
Remove WWW entries moved into port Makefiles
|
2022-09-07 23:58:51 +02:00 |
|
rampler
|
*: Bump PORTREVISIONs for math/mpc update to 1.3.1
|
2023-04-23 09:09:58 +00:00 |
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readseq
|
Remove WWW entries moved into port Makefiles
|
2022-09-07 23:58:51 +02:00 |
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recombine
|
Remove WWW entries moved into port Makefiles
|
2022-09-07 23:58:51 +02:00 |
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rna-seq
|
biology/rna-seq: Add biology/star dep to metaport
|
2023-07-31 09:36:06 -05:00 |
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ruby-bio
|
Mk/**ruby.mk: Switch from USE_RUBY=yes to USES=ruby
|
2023-01-14 17:08:33 -06:00 |
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rubygem-bio
|
Mk/**ruby.mk: Switch from USE_RUBY=yes to USES=ruby
|
2023-01-14 17:08:33 -06:00 |
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rubygem-bio-executables
|
Mk/**ruby.mk: Switch from USE_RUBY=yes to USES=ruby
|
2023-01-14 17:08:33 -06:00 |
|
rubygem-bio-old-biofetch-emulator
|
Mk/**ruby.mk: Switch from USE_RUBY=yes to USES=ruby
|
2023-01-14 17:08:33 -06:00 |
|
rubygem-bio-shell
|
Mk/**ruby.mk: Switch from USE_RUBY=yes to USES=ruby
|
2023-01-14 17:08:33 -06:00 |
|
salmon
|
devel/onetbb: Update to 2021.10.0
|
2023-08-21 12:09:23 +02:00 |
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sam2pairwise
|
Remove WWW entries moved into port Makefiles
|
2022-09-07 23:58:51 +02:00 |
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samtools
|
biology/samtools: Update to 1.17
|
2023-02-24 17:27:21 -06:00 |
|
scrm
|
Remove WWW entries moved into port Makefiles
|
2022-09-07 23:58:51 +02:00 |
|
seaview
|
*/*: Bump jpeg-turbo users treewide
|
2023-07-28 19:13:17 +02:00 |
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seqan
|
Remove WWW entries moved into port Makefiles
|
2022-09-07 23:58:51 +02:00 |
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seqan-apps
|
biology/seqan-apps: Fix build with llvm16
|
2023-08-06 23:53:04 +02:00 |
|
seqan1
|
Remove WWW entries moved into port Makefiles
|
2022-09-07 23:58:51 +02:00 |
|
seqan3
|
*: Bump PORTREVISIONs for math/mpc update to 1.3.1
|
2023-04-23 09:09:58 +00:00 |
|
seqio
|
Remove WWW entries moved into port Makefiles
|
2022-09-07 23:58:51 +02:00 |
|
seqkit
|
biology/seqkit: Update 2.5.0 → 2.5.1
|
2023-08-08 22:52:28 -07:00 |
|
seqtk
|
biology/seqtk: Update to 1.4
|
2023-05-23 17:42:13 -05:00 |
|
seqwish
|
biology/seqwish: Broken on i386
|
2023-08-16 22:27:09 -07:00 |
|
sigviewer
|
*: Bump PORTREVISIONs for math/mpc update to 1.3.1
|
2023-04-23 09:09:58 +00:00 |
|
sim4
|
Remove WWW lines that have been moved into Makefiles
|
2022-09-08 17:46:38 +02:00 |
|
slclust
|
Remove WWW entries moved into port Makefiles
|
2022-09-07 23:58:51 +02:00 |
|
smithwaterman
|
Remove WWW entries moved into port Makefiles
|
2022-09-07 23:58:51 +02:00 |
|
snpeff
|
all: remove explicit versions in USES=python for "3.x+"
|
2023-06-27 21:34:34 +02:00 |
|
spoa
|
*: Bump PORTREVISIONs for math/mpc update to 1.3.1
|
2023-04-23 09:09:58 +00:00 |
|
sra-tools
|
biology/sra-tools: Update to 3.0.6
|
2023-08-10 12:17:24 -05:00 |
|
stacks
|
Remove WWW entries moved into port Makefiles
|
2022-09-07 23:58:51 +02:00 |
|
star
|
biology/star: Fix SIMD issue on non-amd64
|
2023-08-21 09:33:20 -05:00 |
|
stringtie
|
Remove WWW entries moved into port Makefiles
|
2022-09-07 23:58:51 +02:00 |
|
subread
|
Remove WWW entries moved into port Makefiles
|
2022-09-07 23:58:51 +02:00 |
|
tabixpp
|
biology/tabixpp: Deprecate
|
2023-01-22 11:01:57 -06:00 |
|
taxonkit
|
all: Bump PORTREVISION after lang/go{119,120} update
|
2023-08-04 09:24:50 -05:00 |
|
treekin
|
*: Bump PORTREVISIONs for math/mpc update to 1.3.1
|
2023-04-23 09:09:58 +00:00 |
|
treepuzzle
|
Remove WWW entries moved into port Makefiles
|
2022-09-07 23:58:51 +02:00 |
|
trimadap
|
biology/trimadap: drop GCC requirement on powerpc64le
|
2023-08-03 10:40:03 +00:00 |
|
trimmomatic
|
Remove WWW entries moved into port Makefiles
|
2022-09-07 23:58:51 +02:00 |
|
tRNAscan-SE
|
biology/tRNAscan-SE: Update to 2.0.11
|
2022-10-12 12:45:24 +01:00 |
|
ucsc-userapps
|
all: remove explicit versions in USES=python for "3.x+"
|
2023-06-27 21:34:34 +02:00 |
|
ugene
|
Mk/Uses: always use colon for build/run suffix
|
2022-09-11 12:20:14 +02:00 |
|
unikmer
|
all: Bump PORTREVISION after lang/go{119,120} update
|
2023-08-04 09:24:50 -05:00 |
|
vcf-split
|
biology/vcf-split: Update to 0.1.5-4
|
2022-12-11 14:11:33 -06:00 |
|
vcf2hap
|
Remove WWW entries moved into port Makefiles
|
2022-09-07 23:58:51 +02:00 |
|
vcflib
|
biology/vcflib: not for armv6/7
|
2023-07-31 01:59:09 +03:00 |
|
vcftools
|
biology/vcftools: Unbreak build with clang 16
|
2023-07-15 20:29:00 -05:00 |
|
velvet
|
Remove WWW entries moved into port Makefiles
|
2022-09-07 23:58:51 +02:00 |
|
viennarna
|
biology/viennarna: Mark BROKEN on 14
|
2023-08-18 08:57:13 +02:00 |
|
vsearch
|
biology/vsearch: Update to 2.23.0
|
2023-07-08 14:10:45 -05:00 |
|
vt
|
biology/vt: Bump PORTREVISION for biology/htslib update
|
2023-01-05 19:19:19 -06:00 |
|
wfa2-lib
|
*/*: Sunset 12.3-RELEASE from ports tree
|
2023-03-30 18:59:51 -05:00 |
|
wise
|
*/*: Fix build with llvm16 on 13.2-STABLE
|
2023-07-26 02:48:20 +02:00 |
|
Makefile
|
biology/py-htseq: Python library for sequence analysis
|
2023-07-28 10:41:58 -05:00 |
0e8f22496e