| .. |
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abyss
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*: Bump PORTREVISIONs for math/mpc update to 1.3.1
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2023-04-23 09:09:58 +00:00 |
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ad2vcf
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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artemis
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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atac-seq
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*: Bump PORTREVISIONs for math/mpc update to 1.3.1
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2023-04-23 09:09:58 +00:00 |
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augustus
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*: Bump PORTREVISIONs for math/mpc update to 1.3.1
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2023-04-23 09:09:58 +00:00 |
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avida
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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babel
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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bamtools
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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bamutil
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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barrnap
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biology/barrnap: Update descr
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2022-11-24 19:12:18 -08:00 |
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bbmap
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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bcf-score
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biology/bcf-score: Bcftools plugins for GWAS-VCF summary statistics
|
2023-02-25 08:27:46 -06:00 |
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bcftools
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biology/bcftools: Update to 1.17
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2023-02-24 17:30:58 -06:00 |
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bedtools
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biology/bedtools: Update to 2.31.0
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2023-04-28 20:03:07 -05:00 |
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bfc
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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bio-mocha
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biology/bio-mocha: Update to 1.16
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2023-01-05 17:21:03 -06:00 |
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bioawk
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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biococoa
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audio/opus: bump consumers after update to 1.4
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2023-04-25 17:17:15 +02:00 |
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biolibc
|
biology/biolibc: Update to 0.2.4
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2022-12-11 14:06:23 -06:00 |
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biolibc-tools
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biology/biolibc-tools: Update to 0.1.4.1
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2022-12-13 18:11:56 -06:00 |
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bioparser
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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biosig
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*: Bump PORTREVISIONs for math/mpc update to 1.3.1
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2023-04-23 09:09:58 +00:00 |
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biosoup
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*: Bump PORTREVISIONs for math/mpc update to 1.3.1
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2023-04-23 09:09:58 +00:00 |
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biostar-tools
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audio/opus: bump consumers after update to 1.4
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2023-04-25 17:17:15 +02:00 |
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bolt-lmm
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*/*: bump all direct Boost cunsumers
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2023-04-27 21:25:55 +03:00 |
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bowtie
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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bowtie2
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biology/bowtie2: Update to 2.5.1
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2023-01-21 16:30:48 -06:00 |
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bwa
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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canu
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*/*: Refactor java/openjdk7 removal
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2023-04-04 13:10:53 -05:00 |
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cd-hit
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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cdbfasta
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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checkm
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*: Bump PORTREVISIONs for math/mpc update to 1.3.1
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2023-04-23 09:09:58 +00:00 |
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clustal-omega
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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clustalw
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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cufflinks
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*/*: bump all direct Boost cunsumers
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2023-04-27 21:25:55 +03:00 |
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cytoscape
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biology/cytoscape: Broken on armv6, armv7
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2022-12-10 23:41:04 -08:00 |
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ddocent
|
*: Bump PORTREVISIONs for math/mpc update to 1.3.1
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2023-04-23 09:09:58 +00:00 |
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diamond
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biology/diamond: Update to 2.1.6
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2023-03-18 12:49:03 -03:00 |
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dsr-pdb
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*/*: bump all direct Boost cunsumers
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2023-04-27 21:25:55 +03:00 |
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edlib
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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emboss
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biology/emboss: Ignore with mysql 8.0
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2023-02-01 04:39:38 -06:00 |
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erminej
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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exonerate
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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fasda
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biology/fasda: Fast and simple differential analysis
|
2022-12-12 11:17:22 -06:00 |
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fasta
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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fasta3
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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fastahack
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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fastdnaml
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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fastool
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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fastp
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*: Bump PORTREVISIONs for math/mpc update to 1.3.1
|
2023-04-23 09:09:58 +00:00 |
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fastq-trim
|
biology/fastq-trim: Update to 0.1.2
|
2022-12-11 15:24:05 -06:00 |
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fastqc
|
biology/fastqc: Update to 0.12.1
|
2023-03-04 18:17:20 -06:00 |
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fasttree
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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fastx-toolkit
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biology/fastx-toolkit: Unbreak build on 14-CURRENT
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2023-03-07 11:28:13 -06:00 |
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figtree
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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flash
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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fluctuate
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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freebayes
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biology/freebayes: Drop redundant tabixpp dep
|
2023-01-22 10:42:34 -06:00 |
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garlic
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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gatk
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biology/gatk: Update 4.2.6.1 -> 4.3.0.0
|
2022-11-26 20:06:47 -08:00 |
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gcta
|
*: Bump PORTREVISIONs for math/mpc update to 1.3.1
|
2023-04-23 09:09:58 +00:00 |
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gemma
|
*: Bump PORTREVISIONs for math/mpc update to 1.3.1
|
2023-04-23 09:09:58 +00:00 |
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generand
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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gff2ps
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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gffread
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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gmap
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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gperiodic
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accessibility/at-spi2-core: update to 2.46.0
|
2023-03-02 06:23:10 +01:00 |
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graphlan
|
Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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groopm
|
*: Bump PORTREVISIONs for math/mpc update to 1.3.1
|
2023-04-23 09:09:58 +00:00 |
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haplohseq
|
*/*: bump all direct Boost cunsumers
|
2023-04-27 21:25:55 +03:00 |
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hhsuite
|
*: Bump PORTREVISIONs for math/mpc update to 1.3.1
|
2023-04-23 09:09:58 +00:00 |
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hisat2
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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hmmer
|
biology/hmmer: Update to 3.3.2
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2022-10-11 15:13:01 -05:00 |
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htslib
|
biology/htslib: fix build on armv7
|
2023-04-18 23:55:29 +02:00 |
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hyphy
|
biology/hyphy: Update to 2.5.50
|
2023-04-19 13:30:57 -03:00 |
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igv
|
audio/opus: bump consumers after update to 1.4
|
2023-04-25 17:17:15 +02:00 |
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infernal
|
biology/infernal: Update to 1.1.4
|
2022-10-12 11:15:54 +01:00 |
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iolib
|
Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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iqtree
|
*: Bump PORTREVISIONs for math/mpc update to 1.3.1
|
2023-04-23 09:09:58 +00:00 |
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jalview
|
biology/jalview: Update 2.11.1.4 -> 2.11.2.5
|
2022-10-11 23:58:18 -07:00 |
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jellyfish
|
biology/jellyfish: Bump PORTREVISION for biology/htslib update
|
2023-01-05 19:24:44 -06:00 |
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kallisto
|
*: Bump PORTREVISIONs for math/mpc update to 1.3.1
|
2023-04-23 09:09:58 +00:00 |
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kmcp
|
all: Bump PORTREVISION after lang/go{119,120} update
|
2023-04-08 10:13:25 -05:00 |
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lamarc
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biology/lamarc: Refactor after wxgtk28 removal
|
2022-12-31 04:54:58 +01:00 |
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libbigwig
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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libcombine
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biology/libcombine: Update 0.2.19 -> 0.2.20
|
2022-12-08 03:11:24 -08:00 |
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libgff
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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libgtextutils
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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libneurosim
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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libnuml
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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libsbml
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biology/libsbml: Update WWW and clean up pkg-descr
|
2023-04-06 01:29:43 +08:00 |
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libsedml
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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linux-foldingathome
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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mafft
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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mapm3
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Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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megahit
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biology/megahit: Add cmake patch to respect ports build flags
|
2022-11-24 08:10:13 -06:00 |
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metaeuk
|
biology/metaeuk: Fix build on systems withour OpenMP enabled
|
2022-12-10 01:51:02 -08:00 |
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migrate
|
Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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minimap2
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biology/minimap2: Update to 2.25
|
2023-04-29 09:53:40 -05:00 |
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mmseqs2
|
Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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molden
|
*: Bump PORTREVISIONs for math/mpc update to 1.3.1
|
2023-04-23 09:09:58 +00:00 |
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mothur
|
Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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mrbayes
|
Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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mummer
|
Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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muscle
|
Remove WWW entries moved into port Makefiles
|
2022-09-07 23:58:51 +02:00 |
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ncbi-blast+
|
devel/grpc: Update to 1.54.0 (should be part of 8f17596cf5)
|
2023-04-20 02:53:02 +08:00 |
|
ncbi-cxx-toolkit
|
graphics/proj: Update to 9.2.0
|
2023-03-09 13:42:31 +01:00 |
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ncbi-entrez-direct
|
all: Bump PORTREVISION after lang/go{119,120} update
|
2023-04-08 10:13:25 -05:00 |
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ncbi-toolkit
|
*/*: Bump PORTREVISION for consumers of libunistring
|
2022-10-22 11:36:07 +02:00 |
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ncbi-vdb
|
*: Bump PORTREVISIONs for math/mpc update to 1.3.1
|
2023-04-23 09:09:58 +00:00 |
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ngs-sdk
|
Remove WWW entries moved into port Makefiles
|
2022-09-07 23:58:51 +02:00 |
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p5-AcePerl
|
Remove WWW entries moved into port Makefiles
|
2022-09-07 23:58:51 +02:00 |
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p5-Bio-ASN1-EntrezGene
|
Remove WWW entries moved into port Makefiles
|
2022-09-07 23:58:51 +02:00 |
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p5-Bio-Cluster
|
Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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p5-Bio-Coordinate
|
Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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p5-Bio-Das
|
Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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p5-Bio-Das-Lite
|
Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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p5-Bio-DB-EMBL
|
Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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p5-Bio-DB-NCBIHelper
|
Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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p5-Bio-FeatureIO
|
Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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p5-Bio-GFF3
|
Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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p5-Bio-Glite
|
Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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p5-Bio-Graphics
|
Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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p5-Bio-MAGETAB
|
Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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p5-Bio-NEXUS
|
Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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p5-Bio-Phylo
|
Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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p5-Bio-SCF
|
Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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p5-Bio-Variation
|
Remove WWW entries moved into port Makefiles
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2022-09-07 23:58:51 +02:00 |
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p5-BioPerl
|
Remove WWW entries moved into port Makefiles
|
2022-09-07 23:58:51 +02:00 |
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p5-BioPerl-Run
|
Remove WWW entries moved into port Makefiles
|
2022-09-07 23:58:51 +02:00 |
|
p5-transdecoder
|
biology/p5-transdecoder: Update to 5.7.0
|
2023-01-30 16:30:54 -06:00 |
|
p5-TrimGalore
|
Remove WWW entries moved into port Makefiles
|
2022-09-07 23:58:51 +02:00 |
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paml
|
biology/paml: Update to 4.10.6
|
2022-11-12 22:35:29 -04:00 |
|
pbbam
|
biology/pbbam: Bump PORTREVISION for biology/htslib update
|
2023-01-05 19:25:09 -06:00 |
|
pbseqan
|
Remove WWW entries moved into port Makefiles
|
2022-09-07 23:58:51 +02:00 |
|
peak-classifier
|
*: Bump PORTREVISIONs for math/mpc update to 1.3.1
|
2023-04-23 09:09:58 +00:00 |
|
pear-merger
|
Remove WWW entries moved into port Makefiles
|
2022-09-07 23:58:51 +02:00 |
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phrap
|
Remove WWW entries moved into port Makefiles
|
2022-09-07 23:58:51 +02:00 |
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phred
|
Remove WWW entries moved into port Makefiles
|
2022-09-07 23:58:51 +02:00 |
|
phyml
|
Remove WWW entries moved into port Makefiles
|
2022-09-07 23:58:51 +02:00 |
|
picard-tools
|
*/*: Refactor java/openjdk7 removal
|
2023-04-04 13:10:53 -05:00 |
|
plink
|
*: Bump PORTREVISIONs for math/mpc update to 1.3.1
|
2023-04-23 09:09:58 +00:00 |
|
pooler
|
biology/pooler: update to 1.86
|
2022-12-19 08:56:15 +01:00 |
|
primer3
|
Remove WWW entries moved into port Makefiles
|
2022-09-07 23:58:51 +02:00 |
|
prodigal
|
Remove WWW entries moved into port Makefiles
|
2022-09-07 23:58:51 +02:00 |
|
prodigy-lig
|
*: Bump PORTREVISIONs for math/mpc update to 1.3.1
|
2023-04-23 09:09:58 +00:00 |
|
protomol
|
Remove WWW entries moved into port Makefiles
|
2022-09-07 23:58:51 +02:00 |
|
psi88
|
*: Bump PORTREVISIONs for math/mpc update to 1.3.1
|
2023-04-23 09:09:58 +00:00 |
|
py-bcbio-gff
|
biology/py-bcbio-gff: Update to 0.7.0
|
2023-03-16 17:32:06 -05:00 |
|
py-biom-format
|
*: Bump PORTREVISIONs for math/mpc update to 1.3.1
|
2023-04-23 09:09:58 +00:00 |
|
py-biopython
|
*: Bump PORTREVISIONs for math/mpc update to 1.3.1
|
2023-04-23 09:09:58 +00:00 |
|
py-biosig
|
*: Bump PORTREVISIONs for math/mpc update to 1.3.1
|
2023-04-23 09:09:58 +00:00 |
|
py-bx-python
|
*: Bump PORTREVISIONs for math/mpc update to 1.3.1
|
2023-04-23 09:09:58 +00:00 |
|
py-crossmap
|
*: Bump PORTREVISIONs for math/mpc update to 1.3.1
|
2023-04-23 09:09:58 +00:00 |
|
py-cutadapt
|
*/*: rename CHEESESHOP to PYPI in MASTER_SITES
|
2023-01-11 18:58:34 +03:00 |
|
py-deeptools
|
*: Bump PORTREVISIONs for math/mpc update to 1.3.1
|
2023-04-23 09:09:58 +00:00 |
|
py-deeptoolsintervals
|
*/*: rename CHEESESHOP to PYPI in MASTER_SITES
|
2023-01-11 18:58:34 +03:00 |
|
py-dna-features-viewer
|
*: Bump PORTREVISIONs for math/mpc update to 1.3.1
|
2023-04-23 09:09:58 +00:00 |
|
py-dnaio
|
*/*: rename CHEESESHOP to PYPI in MASTER_SITES
|
2023-01-11 18:58:34 +03:00 |
|
py-ete3
|
audio/opus: bump consumers after update to 1.4
|
2023-04-25 17:17:15 +02:00 |
|
py-Genesis-PyAPI
|
*/*: rename CHEESESHOP to PYPI in MASTER_SITES
|
2023-01-11 18:58:34 +03:00 |
|
py-gffutils
|
biology/py-gffutils: Update 0.11.0 → 0.11.1
|
2023-03-12 01:02:31 -08:00 |
|
py-goatools
|
*: Bump PORTREVISIONs for math/mpc update to 1.3.1
|
2023-04-23 09:09:58 +00:00 |
|
py-gtfparse
|
*: Bump PORTREVISIONs for math/mpc update to 1.3.1
|
2023-04-23 09:09:58 +00:00 |
|
py-hits
|
*/*: rename CHEESESHOP to PYPI in MASTER_SITES
|
2023-01-11 18:58:34 +03:00 |
|
py-libnuml
|
biology/py-libnuml: Allow build with swig 4.1.0+
|
2023-04-19 02:05:12 +08:00 |
|
py-libsedml
|
biology/py-libsedml: Allow build with swig 4.1.0+
|
2023-04-19 02:05:12 +08:00 |
|
py-loompy
|
*: Bump PORTREVISIONs for math/mpc update to 1.3.1
|
2023-04-23 09:09:58 +00:00 |
|
py-macs2
|
*: Bump PORTREVISIONs for math/mpc update to 1.3.1
|
2023-04-23 09:09:58 +00:00 |
|
py-mrcfile
|
*: Bump PORTREVISIONs for math/mpc update to 1.3.1
|
2023-04-23 09:09:58 +00:00 |
|
py-multiqc
|
*: Bump PORTREVISIONs for math/mpc update to 1.3.1
|
2023-04-23 09:09:58 +00:00 |
|
py-ont-fast5-api
|
*: Bump PORTREVISIONs for math/mpc update to 1.3.1
|
2023-04-23 09:09:58 +00:00 |
|
py-orange3-bioinformatics
|
audio/opus: bump consumers after update to 1.4
|
2023-04-25 17:17:15 +02:00 |
|
py-orange3-single-cell
|
audio/opus: bump consumers after update to 1.4
|
2023-04-25 17:17:15 +02:00 |
|
py-pandas-charm
|
*: Bump PORTREVISIONs for math/mpc update to 1.3.1
|
2023-04-23 09:09:58 +00:00 |
|
py-py2bit
|
*/*: rename CHEESESHOP to PYPI in MASTER_SITES
|
2023-01-11 18:58:34 +03:00 |
|
py-pybigwig
|
biology/py-pybigwig: Update to 0.3.21
|
2023-04-01 16:10:15 -05:00 |
|
py-pyfaidx
|
*/*: rename CHEESESHOP to PYPI in MASTER_SITES
|
2023-01-11 18:58:34 +03:00 |
|
py-pyrodigal
|
biology/py-pyrodigal: Update 2.0.3 → 2.1.0
|
2023-03-19 09:42:53 -07:00 |
|
py-pysam
|
*/*: rename CHEESESHOP to PYPI in MASTER_SITES
|
2023-01-11 18:58:34 +03:00 |
|
py-PySCeS
|
*: Bump PORTREVISIONs for math/mpc update to 1.3.1
|
2023-04-23 09:09:58 +00:00 |
|
py-python-libsbml
|
*/*: rename CHEESESHOP to PYPI in MASTER_SITES
|
2023-01-11 18:58:34 +03:00 |
|
py-pywgsim
|
*/*: rename CHEESESHOP to PYPI in MASTER_SITES
|
2023-01-11 18:58:34 +03:00 |
|
py-resdk
|
biology/py-resdk: Update 16.0.0 → 17.0.0
|
2023-04-27 01:36:47 -07:00 |
|
py-scikit-bio
|
www/py-cachecontrol: Fix port
|
2023-05-08 07:55:57 +08:00 |
|
py-valerius
|
biology/py-valerius: New port: Python bioinformatics tools
|
2022-10-03 21:06:22 -07:00 |
|
py-xenaPython
|
*/*: rename CHEESESHOP to PYPI in MASTER_SITES
|
2023-01-11 18:58:34 +03:00 |
|
pyfasta
|
*: Bump PORTREVISIONs for math/mpc update to 1.3.1
|
2023-04-23 09:09:58 +00:00 |
|
python-nexus
|
*/*: rename CHEESESHOP to PYPI in MASTER_SITES
|
2023-01-11 18:58:34 +03:00 |
|
rainbow
|
Remove WWW entries moved into port Makefiles
|
2022-09-07 23:58:51 +02:00 |
|
rampler
|
*: Bump PORTREVISIONs for math/mpc update to 1.3.1
|
2023-04-23 09:09:58 +00:00 |
|
readseq
|
Remove WWW entries moved into port Makefiles
|
2022-09-07 23:58:51 +02:00 |
|
recombine
|
Remove WWW entries moved into port Makefiles
|
2022-09-07 23:58:51 +02:00 |
|
rna-seq
|
*: Bump PORTREVISIONs for math/mpc update to 1.3.1
|
2023-04-23 09:09:58 +00:00 |
|
ruby-bio
|
Mk/**ruby.mk: Switch from USE_RUBY=yes to USES=ruby
|
2023-01-14 17:08:33 -06:00 |
|
rubygem-bio
|
Mk/**ruby.mk: Switch from USE_RUBY=yes to USES=ruby
|
2023-01-14 17:08:33 -06:00 |
|
rubygem-bio-executables
|
Mk/**ruby.mk: Switch from USE_RUBY=yes to USES=ruby
|
2023-01-14 17:08:33 -06:00 |
|
rubygem-bio-old-biofetch-emulator
|
Mk/**ruby.mk: Switch from USE_RUBY=yes to USES=ruby
|
2023-01-14 17:08:33 -06:00 |
|
rubygem-bio-shell
|
Mk/**ruby.mk: Switch from USE_RUBY=yes to USES=ruby
|
2023-01-14 17:08:33 -06:00 |
|
sam2pairwise
|
Remove WWW entries moved into port Makefiles
|
2022-09-07 23:58:51 +02:00 |
|
samtools
|
biology/samtools: Update to 1.17
|
2023-02-24 17:27:21 -06:00 |
|
scrm
|
Remove WWW entries moved into port Makefiles
|
2022-09-07 23:58:51 +02:00 |
|
seaview
|
Remove WWW entries moved into port Makefiles
|
2022-09-07 23:58:51 +02:00 |
|
seqan
|
Remove WWW entries moved into port Makefiles
|
2022-09-07 23:58:51 +02:00 |
|
seqan-apps
|
Remove WWW entries moved into port Makefiles
|
2022-09-07 23:58:51 +02:00 |
|
seqan1
|
Remove WWW entries moved into port Makefiles
|
2022-09-07 23:58:51 +02:00 |
|
seqan3
|
*: Bump PORTREVISIONs for math/mpc update to 1.3.1
|
2023-04-23 09:09:58 +00:00 |
|
seqio
|
Remove WWW entries moved into port Makefiles
|
2022-09-07 23:58:51 +02:00 |
|
seqkit
|
all: Bump PORTREVISION after lang/go{119,120} update
|
2023-04-08 10:13:25 -05:00 |
|
seqtk
|
Remove WWW entries moved into port Makefiles
|
2022-09-07 23:58:51 +02:00 |
|
sigviewer
|
*: Bump PORTREVISIONs for math/mpc update to 1.3.1
|
2023-04-23 09:09:58 +00:00 |
|
sim4
|
Remove WWW lines that have been moved into Makefiles
|
2022-09-08 17:46:38 +02:00 |
|
slclust
|
Remove WWW entries moved into port Makefiles
|
2022-09-07 23:58:51 +02:00 |
|
smithwaterman
|
Remove WWW entries moved into port Makefiles
|
2022-09-07 23:58:51 +02:00 |
|
snpeff
|
biology/snpeff: Update to 5.1
|
2022-12-19 12:50:00 -06:00 |
|
spoa
|
*: Bump PORTREVISIONs for math/mpc update to 1.3.1
|
2023-04-23 09:09:58 +00:00 |
|
sra-tools
|
*: Bump PORTREVISIONs for math/mpc update to 1.3.1
|
2023-04-23 09:09:58 +00:00 |
|
stacks
|
Remove WWW entries moved into port Makefiles
|
2022-09-07 23:58:51 +02:00 |
|
star
|
biology/star: Bump PORTREVISION for biology/htslib update
|
2023-01-05 19:27:16 -06:00 |
|
stringtie
|
Remove WWW entries moved into port Makefiles
|
2022-09-07 23:58:51 +02:00 |
|
subread
|
Remove WWW entries moved into port Makefiles
|
2022-09-07 23:58:51 +02:00 |
|
tabixpp
|
biology/tabixpp: Deprecate
|
2023-01-22 11:01:57 -06:00 |
|
taxonkit
|
biology/taxonkit: Update 0.14.1 → 0.14.2
|
2023-04-14 22:02:19 -07:00 |
|
treekin
|
*: Bump PORTREVISIONs for math/mpc update to 1.3.1
|
2023-04-23 09:09:58 +00:00 |
|
treepuzzle
|
Remove WWW entries moved into port Makefiles
|
2022-09-07 23:58:51 +02:00 |
|
trimadap
|
Remove WWW entries moved into port Makefiles
|
2022-09-07 23:58:51 +02:00 |
|
trimmomatic
|
Remove WWW entries moved into port Makefiles
|
2022-09-07 23:58:51 +02:00 |
|
tRNAscan-SE
|
biology/tRNAscan-SE: Update to 2.0.11
|
2022-10-12 12:45:24 +01:00 |
|
ucsc-userapps
|
Remove WWW entries moved into port Makefiles
|
2022-09-07 23:58:51 +02:00 |
|
ugene
|
Mk/Uses: always use colon for build/run suffix
|
2022-09-11 12:20:14 +02:00 |
|
unikmer
|
all: Bump PORTREVISION after lang/go{119,120} update
|
2023-04-08 10:13:25 -05:00 |
|
vcf-split
|
biology/vcf-split: Update to 0.1.5-4
|
2022-12-11 14:11:33 -06:00 |
|
vcf2hap
|
Remove WWW entries moved into port Makefiles
|
2022-09-07 23:58:51 +02:00 |
|
vcflib
|
biology/vcflib: Update to 1.0.7
|
2023-02-09 09:35:32 -06:00 |
|
vcftools
|
Remove WWW entries moved into port Makefiles
|
2022-09-07 23:58:51 +02:00 |
|
velvet
|
Remove WWW entries moved into port Makefiles
|
2022-09-07 23:58:51 +02:00 |
|
viennarna
|
Remove WWW entries moved into port Makefiles
|
2022-09-07 23:58:51 +02:00 |
|
vsearch
|
biology/vsearch: Update to 2.22.1
|
2022-09-21 11:24:14 -05:00 |
|
vt
|
biology/vt: Bump PORTREVISION for biology/htslib update
|
2023-01-05 19:19:19 -06:00 |
|
wfa2-lib
|
*/*: Sunset 12.3-RELEASE from ports tree
|
2023-03-30 18:59:51 -05:00 |
|
wise
|
Remove WWW entries moved into port Makefiles
|
2022-09-07 23:58:51 +02:00 |
|
Makefile
|
biology/bcf-score: Bcftools plugins for GWAS-VCF summary statistics
|
2023-02-25 08:27:46 -06:00 |
315936a0b5