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ariadne
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6 ports categories: Remove $PTHREAD_LIBS
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2015-03-24 16:01:21 +00:00 |
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artemis
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- Add empty directory to plist
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2015-03-11 14:41:53 +00:00 |
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avida
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- Unbreak on PowerPC by using atomicops implementation for Linux and GCC
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2015-09-02 12:29:09 +00:00 |
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babel
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Unbreak the build on PowerPC (at least) by always using va_copy() macro for
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2015-09-02 10:10:06 +00:00 |
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bcftools
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New port: biology/bcftools
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2015-06-05 21:01:13 +00:00 |
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biococoa
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Make all GNUstep ports install into the System domain so that the Local domain is available for stuff built from source.
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2015-09-19 10:33:34 +00:00 |
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biojava
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- add stage support
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2014-06-01 10:37:22 +00:00 |
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blat
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Update to upstream version 36
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2015-01-01 18:17:53 +00:00 |
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bwa
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BWA is a program for aligning sequencing reads against a large reference
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2015-09-25 18:39:36 +00:00 |
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cd-hit
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- Use compiler:openmp instead of gcc
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2015-09-19 13:12:44 +00:00 |
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cdbfasta
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Fast indexing and retrieval of FASTA records from flat file data bases.
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2015-09-25 18:37:24 +00:00 |
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chemeq
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clustalw
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MASTER_SITES cleanup.
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2015-05-14 10:15:04 +00:00 |
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consed
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${ENV} does not exist, it is called ${SETENV}.
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2015-04-13 14:49:37 +00:00 |
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crux
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Unbreak the build on PowerPC, it had nothing to do with "error in pthreads":
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2015-09-02 09:23:05 +00:00 |
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emboss
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Fix packaging as a user (pkg already takes care of credentials)
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2015-03-18 21:52:19 +00:00 |
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fasta
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- Do not falsely advertise that PowerPC build runs out of space and fails
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2015-09-02 10:35:25 +00:00 |
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fasta3
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- Update to 36.3.8
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2015-10-16 13:31:10 +00:00 |
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fastdnaml
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Cleanup plist
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2014-10-20 07:10:48 +00:00 |
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fastool
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Simple and quick FastQ and FastA tool for file reading and conversion.
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2015-09-25 18:35:14 +00:00 |
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fasttree
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FastTree infers approximately-maximum-likelihood phylogenetic trees from
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2015-09-25 18:34:29 +00:00 |
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fastx-toolkit
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The FASTX-Toolkit is a collection of command line tools for Short-Reads
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2015-09-25 18:33:18 +00:00 |
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fluctuate
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Remove $FreeBSD$ from patches files in categories a-j.
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2015-05-22 13:34:20 +00:00 |
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garlic
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Cleanup plist
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2014-10-20 07:10:48 +00:00 |
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gff2ps
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Convert ports to use the options helpers in categories [abc]*, and minor fixes.
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2015-08-19 13:29:59 +00:00 |
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gmap
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Fix MASTER_SITES
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2014-09-05 09:25:45 +00:00 |
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gperiodic
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grappa
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biology/grappa: define license (GPLv2)
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2015-09-25 18:55:08 +00:00 |
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hmmer
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- Remove deprecated option
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2015-04-02 15:41:31 +00:00 |
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htslib
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Update ports in the [bcd]* categories to not use GH_COMMIT.
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2015-05-06 15:16:53 +00:00 |
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iolib
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- Update to 1.14.4
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2015-10-07 00:26:33 +00:00 |
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jalview
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Remove $FreeBSD$ from patches files in categories a-j.
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2015-05-22 13:34:20 +00:00 |
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lagan
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- Fix shebangs
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2015-06-11 10:17:24 +00:00 |
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lamarc
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Remove ansi version fo wxGTK 2.8 and only keep the unicode version
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2015-09-16 19:51:26 +00:00 |
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libgtextutils
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Gordon's text utilities.
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2015-09-25 18:31:28 +00:00 |
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libsbml
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- Add LICENSE_FILE
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2015-10-14 23:51:20 +00:00 |
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linux-foldingathome
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Cleanup plist
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2014-12-20 17:27:08 +00:00 |
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mafft
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Use BROKEN helpers
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2015-06-27 14:30:19 +00:00 |
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mapm3
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migrate
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- Update options
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2015-06-28 15:30:41 +00:00 |
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molden
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Update the default version of GCC in the Ports Collection from GCC 4.7.4
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2014-09-10 20:50:31 +00:00 |
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mopac
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- Upadate biology/mopac to version 1.15
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2014-12-16 22:10:23 +00:00 |
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mrbayes
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Fix build on -current by un-clobbering LDFLAGS. Also, don't
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2014-08-15 16:37:37 +00:00 |
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mummer
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Fix build on mips by properly respecting compiler and flags
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2015-08-05 12:18:41 +00:00 |
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muscle
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Update to 3.8.31.
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2014-06-17 21:36:06 +00:00 |
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ncbi-blast+
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- Unbreak
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2015-05-04 06:08:59 +00:00 |
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ncbi-toolkit
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Cleanup plist
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2014-10-20 07:10:48 +00:00 |
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njplot
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Mark as broken unfetchable ports
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2015-04-05 17:55:35 +00:00 |
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ortep3
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Convert ports to use the options helpers in categories [abc]*, and minor fixes.
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2015-08-19 13:29:59 +00:00 |
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p5-AcePerl
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Make it so that the default Perl is always called perl5.
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2015-09-14 12:19:48 +00:00 |
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p5-Bio-ASN1-EntrezGene
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Start removing MASTER_SITE_SUBDIR=CPAN:username where possible. The
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2015-06-24 15:16:23 +00:00 |
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p5-Bio-Das
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Change the way Perl modules are installed, update the default Perl to 5.18.
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2014-11-26 13:08:24 +00:00 |
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p5-Bio-Das-Lite
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Remove TEST dependency on p5-Test-Simple when the version in core is
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2015-02-26 16:54:41 +00:00 |
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p5-Bio-GFF3
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Make it so that the default Perl is always called perl5.
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2015-09-14 12:19:48 +00:00 |
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p5-Bio-Glite
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Change the way Perl modules are installed, update the default Perl to 5.18.
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2014-11-26 13:08:24 +00:00 |
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p5-Bio-Graphics
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Make it so that the default Perl is always called perl5.
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2015-09-14 12:19:48 +00:00 |
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p5-Bio-MAGETAB
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Some OCD cleanups on some of the perl@ ports.
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2015-03-12 23:00:02 +00:00 |
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p5-Bio-NEXUS
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Make it so that the default Perl is always called perl5.
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2015-09-14 12:19:48 +00:00 |
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p5-Bio-Phylo
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- Update to 0.58
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2014-12-07 04:41:47 +00:00 |
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p5-Bio-SCF
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Change the way Perl modules are installed, update the default Perl to 5.18.
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2014-11-26 13:08:24 +00:00 |
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p5-bioperl
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Make it so that the default Perl is always called perl5.
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2015-09-14 12:19:48 +00:00 |
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p5-bioperl-run
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For the new USE_GITHUB with only GH_TAGNAME set default DISTNAME to
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2015-03-20 20:07:50 +00:00 |
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paml
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Update biology/paml to 4.8a and unbreak.
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2015-04-10 15:39:01 +00:00 |
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phrap
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- Fix various distinfo errors
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2014-10-16 08:55:30 +00:00 |
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phred
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update ports:
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2014-08-23 18:04:58 +00:00 |
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phylip
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Unbreak
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2015-07-28 17:52:11 +00:00 |
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phyml
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Convert to USES=autoreconf
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2014-12-28 19:14:13 +00:00 |
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platon
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Convert ports to use the options helpers in categories [abc]*, and minor fixes.
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2015-08-19 13:29:59 +00:00 |
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plink
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Update the default version of GCC in the Ports Collection from GCC 4.7.4
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2014-09-10 20:50:31 +00:00 |
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plinkseq
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- Update to 0.10
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2014-10-12 03:16:10 +00:00 |
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povchem
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Remove $FreeBSD$ from patches files in categories a-j.
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2015-05-22 13:34:20 +00:00 |
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primer3
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protomol
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Convert ports to use the options helpers in categories [abc]*, and minor fixes.
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2015-08-19 13:29:59 +00:00 |
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psi88
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- Strip binaries
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2015-06-03 17:27:08 +00:00 |
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py-biopython
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Update to 1.65.
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2015-08-05 10:32:31 +00:00 |
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pycogent
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- Convert ports from benchmarks/ and biology/ to new USES=python
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2014-10-19 07:38:11 +00:00 |
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pyfasta
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- Convert ports from benchmarks/ and biology/ to new USES=python
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2014-10-19 07:38:11 +00:00 |
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python-nexus
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- Convert ports from benchmarks/ and biology/ to new USES=python
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2014-10-19 07:38:11 +00:00 |
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recombine
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ruby-bio
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- Fix typo
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2015-10-10 23:15:16 +00:00 |
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samtools
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Update ports in the [bcd]* categories to not use GH_COMMIT.
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2015-05-06 15:16:53 +00:00 |
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seaview
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biology/seaview: Update version 4.5.4.7=>4.5.4.8
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2015-10-20 11:51:32 +00:00 |
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seqan
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biology/segan: Limit GCC to 4.8 while waiting for update
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2015-03-21 11:53:27 +00:00 |
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seqio
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seqtools
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biology/seqtools: 4.35 -> 4.36
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2015-08-08 11:22:24 +00:00 |
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sim4
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ssaha
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Cleanup plist
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2014-12-20 17:27:08 +00:00 |
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t_coffee
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MASTER_SITES cleanup.
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2015-05-14 10:15:04 +00:00 |
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tinker
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Convert ports to use the options helpers in categories [abc]*, and minor fixes.
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2015-08-19 13:29:59 +00:00 |
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treepuzzle
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treeviewx
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- Pet portlint
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2015-10-14 23:50:11 +00:00 |
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tRNAscan-SE
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Convert a bunch of EXTRACT_SUFX=... into USES=tar:...
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2014-07-29 19:11:51 +00:00 |
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ugene
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biology/ugene: qt4-linguist -> qt4-linguisttools
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2015-08-18 20:02:45 +00:00 |
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velvet
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Designatate 4 ports as unsafe for parallel building
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2015-01-19 17:43:57 +00:00 |
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wise
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Cleanup plist
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2014-12-20 17:27:08 +00:00 |
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xmolwt
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Fix previous commit.
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2015-08-19 13:41:51 +00:00 |
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Makefile
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BWA is a program for aligning sequencing reads against a large reference
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2015-09-25 18:39:36 +00:00 |
