| .. |
|
ariadne
|
|
|
|
artemis
|
|
|
|
avida
|
- Unbreak on PowerPC by using atomicops implementation for Linux and GCC
|
2015-09-02 12:29:09 +00:00 |
|
babel
|
Unbreak the build on PowerPC (at least) by always using va_copy() macro for
|
2015-09-02 10:10:06 +00:00 |
|
bcftools
|
|
|
|
biococoa
|
Make all GNUstep ports install into the System domain so that the Local domain is available for stuff built from source.
|
2015-09-19 10:33:34 +00:00 |
|
biojava
|
|
|
|
blat
|
|
|
|
bwa
|
BWA is a program for aligning sequencing reads against a large reference
|
2015-09-25 18:39:36 +00:00 |
|
cd-hit
|
- Use compiler:openmp instead of gcc
|
2015-09-19 13:12:44 +00:00 |
|
cdbfasta
|
Fast indexing and retrieval of FASTA records from flat file data bases.
|
2015-09-25 18:37:24 +00:00 |
|
chemeq
|
|
|
|
clustalw
|
|
|
|
consed
|
Deprecate ports broken for more than 6 months
|
2015-10-25 19:35:28 +00:00 |
|
crux
|
Unbreak the build on PowerPC, it had nothing to do with "error in pthreads":
|
2015-09-02 09:23:05 +00:00 |
|
emboss
|
|
|
|
fasta
|
- Do not falsely advertise that PowerPC build runs out of space and fails
|
2015-09-02 10:35:25 +00:00 |
|
fasta3
|
- Update to 36.3.8
|
2015-10-16 13:31:10 +00:00 |
|
fastdnaml
|
|
|
|
fastool
|
Simple and quick FastQ and FastA tool for file reading and conversion.
|
2015-09-25 18:35:14 +00:00 |
|
fasttree
|
FastTree infers approximately-maximum-likelihood phylogenetic trees from
|
2015-09-25 18:34:29 +00:00 |
|
fastx-toolkit
|
The FASTX-Toolkit is a collection of command line tools for Short-Reads
|
2015-09-25 18:33:18 +00:00 |
|
fluctuate
|
|
|
|
garlic
|
|
|
|
gff2ps
|
Fix ports that confused the meaning of WRKDIR and WRKSRC.
|
2015-11-05 12:36:25 +00:00 |
|
gmap
|
- Update to 2015.09.21
|
2015-10-27 18:49:48 +00:00 |
|
gperiodic
|
|
|
|
grappa
|
biology/grappa: define license (GPLv2)
|
2015-09-25 18:55:08 +00:00 |
|
hmmer
|
|
|
|
htslib
|
|
|
|
iolib
|
- Update to 1.14.6
|
2015-11-09 16:02:13 +00:00 |
|
jalview
|
|
|
|
lagan
|
|
|
|
lamarc
|
Remove ansi version fo wxGTK 2.8 and only keep the unicode version
|
2015-09-16 19:51:26 +00:00 |
|
libgtextutils
|
Gordon's text utilities.
|
2015-09-25 18:31:28 +00:00 |
|
libsbml
|
- Add LICENSE_FILE
|
2015-10-14 23:51:20 +00:00 |
|
linux-foldingathome
|
|
|
|
mafft
|
Use BROKEN helpers
|
2015-06-27 14:30:19 +00:00 |
|
mapm3
|
|
|
|
migrate
|
- Update options
|
2015-06-28 15:30:41 +00:00 |
|
molden
|
|
|
|
mopac
|
|
|
|
mrbayes
|
|
|
|
mummer
|
Fix build on mips by properly respecting compiler and flags
|
2015-08-05 12:18:41 +00:00 |
|
muscle
|
|
|
|
ncbi-blast+
|
|
|
|
ncbi-toolkit
|
|
|
|
njplot
|
Deprecate ports broken for more than 6 months
|
2015-10-25 19:35:28 +00:00 |
|
ortep3
|
Deprecate ports broken for more than 6 months
|
2015-10-25 19:35:28 +00:00 |
|
p5-AcePerl
|
Make it so that the default Perl is always called perl5.
|
2015-09-14 12:19:48 +00:00 |
|
p5-Bio-ASN1-EntrezGene
|
Start removing MASTER_SITE_SUBDIR=CPAN:username where possible. The
|
2015-06-24 15:16:23 +00:00 |
|
p5-Bio-Das
|
|
|
|
p5-Bio-Das-Lite
|
|
|
|
p5-Bio-GFF3
|
Make it so that the default Perl is always called perl5.
|
2015-09-14 12:19:48 +00:00 |
|
p5-Bio-Glite
|
|
|
|
p5-Bio-Graphics
|
Make it so that the default Perl is always called perl5.
|
2015-09-14 12:19:48 +00:00 |
|
p5-Bio-MAGETAB
|
|
|
|
p5-Bio-NEXUS
|
Make it so that the default Perl is always called perl5.
|
2015-09-14 12:19:48 +00:00 |
|
p5-Bio-Phylo
|
|
|
|
p5-Bio-SCF
|
|
|
|
p5-bioperl
|
Make it so that the default Perl is always called perl5.
|
2015-09-14 12:19:48 +00:00 |
|
p5-bioperl-run
|
|
|
|
paml
|
|
|
|
phrap
|
|
|
|
phred
|
|
|
|
phylip
|
Unbreak
|
2015-07-28 17:52:11 +00:00 |
|
phyml
|
|
|
|
platon
|
Mark a few ports BROKEN: unfetchable
|
2015-11-09 12:59:03 +00:00 |
|
plink
|
|
|
|
plinkseq
|
|
|
|
povchem
|
Deprecate ports broken for more than 6 months
|
2015-10-25 19:35:28 +00:00 |
|
primer3
|
|
|
|
protomol
|
Convert ports to use the options helpers in categories [abc]*, and minor fixes.
|
2015-08-19 13:29:59 +00:00 |
|
psi88
|
|
|
|
py-biopython
|
Update to 1.65.
|
2015-08-05 10:32:31 +00:00 |
|
pycogent
|
|
|
|
pyfasta
|
|
|
|
python-nexus
|
|
|
|
recombine
|
|
|
|
ruby-bio
|
- Fix typo
|
2015-10-10 23:15:16 +00:00 |
|
samtools
|
|
|
|
seaview
|
biology/seaview: Broken, Does not fetch (checksum mismatch)
|
2015-11-02 08:14:30 +00:00 |
|
seqan
|
|
|
|
seqio
|
|
|
|
seqtools
|
biology/seqtools: 4.39.0 -> 4.39.1
|
2015-11-13 18:46:02 +00:00 |
|
sim4
|
|
|
|
ssaha
|
|
|
|
t_coffee
|
|
|
|
tinker
|
Convert ports to use the options helpers in categories [abc]*, and minor fixes.
|
2015-08-19 13:29:59 +00:00 |
|
treepuzzle
|
|
|
|
treeviewx
|
- Pet portlint
|
2015-10-14 23:50:11 +00:00 |
|
tRNAscan-SE
|
|
|
|
ugene
|
biology/ugene: qt4-linguist -> qt4-linguisttools
|
2015-08-18 20:02:45 +00:00 |
|
velvet
|
|
|
|
wise
|
|
|
|
xmolwt
|
Fix previous commit.
|
2015-08-19 13:41:51 +00:00 |
|
Makefile
|
BWA is a program for aligning sequencing reads against a large reference
|
2015-09-25 18:39:36 +00:00 |
