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Add new categories science and ukrainian.
2001-03-24 22:40:17 +01:00
# $FreeBSD$
#
Sort entries.
2001-09-21 07:59:19 +02:00
Remove category pkg/COMMENT files in favour of a COMMENT variable in the category makefile. Submitted by: Matthew Seaman <m.seaman@infracaninophile.co.uk> PR: 59651
2004-04-02 09:29:48 +02:00
COMMENT = Scientific ports
Added a Numerical Hartree-Fock Program for Diatomic Molecules. This program package calcluates virtually exact solution of the Hartree-Fock and Hartree-Fock-Salter equations for diatomic molecules (distributed under GPL).
2003-07-24 11:50:24 +02:00
SUBDIR += 2dhf
Add abinit, calculates total energy, charge density and electronic structure of systems.
2004-08-14 10:45:42 +02:00
SUBDIR += abinit
Add new port science/afni AFNI (Advanced Functional Neuro Imaging) is a tool for analyzing 3 dimensional images, especially functional MRI images used in brain mapping research. WWW: http://afni.nimh.nih.gov/ PR: ports/90752 Submitted by: Jason Bacon <bacon@smithers.neuro.mcw.edu> Reviewed by: garga (mentor) Approved by: garga (mentor)
2006-01-25 18:34:35 +01:00
SUBDIR += afni
New port: science/at Acoustic ToolBox The Acoustic ToolBox includes four acoustic models: BELLHOP: A beam/ray trace code KRAKEN: A normal mode code SCOOTER: A finite element FFP code SPARC: A time domain FFP code A common input structure has been used throughout so that only minor modifications are needed to switch from one program to another. All the models produce shade files which can be processed using a common set of plotting routines to plot transmission loss vs. range or vs. range and depth. These plotting routines are contained in the GLOBAL directory. PR: ports/42378 Submitted by: Heiner Strauss <heiner@bilch.com>
2003-09-08 14:45:59 +02:00
SUBDIR += at
add bblimage 0.66 A set of software tools for medical image processing
2002-07-22 08:52:25 +02:00
SUBDIR += bblimage
Add buddy 2.4, a Binary Decision Diagram library. PR: 71221 Submitted by: Leland Wang
2005-01-22 16:01:02 +01:00
SUBDIR += buddy
Add cdcl, a scientific graphic library for geoscience PR: ports/62871 Submitted by: Shin'ya Murakami <murashin@edamame.summing.com>
2004-02-27 23:35:23 +01:00
SUBDIR += cdcl
Common Data Format (CDF) is a conceptual data abstraction for storing multi-dimensional data sets. The basic component of CDF is a software programming interface that is a device independent view of the CDF data model. The application developer is insulated from the actual physical file format for reasons of conceptual simplicity, device independence, and future expandability. CDF files created on any given platform can be transported to any other platform on to which CDF is ported and used with any CDF tools or layered applications. A comparison between CDF, netCDF, HDF and HDF5 is available at <http://cdf.gsfc.nasa.gov/html/FAQ.html>.
2006-01-28 21:40:56 +01:00
SUBDIR += cdf
add chemtool Chemtool is a program for drawing organic molecules easily and store them as an Postscript, X-Bitmap, LaTeX and XFig file ps. first science ports ?
2001-03-30 21:23:00 +02:00
SUBDIR += chemtool
Remove # chemtool-devel is now real developer version of chemtool.
2003-10-04 04:30:06 +02:00
SUBDIR += chemtool-devel
Fix broken ordering and remove sample directory.
2001-05-08 02:03:05 +02:00
SUBDIR += clhep
DCL is scientific graphic library for geoscience, written in Fortran. PR: ports/76856 Submitted by: Shin'ya Murakami <murakami (at) ahs.scitec.kobe-u.ac.jp>
2005-02-24 21:26:31 +01:00
SUBDIR += dcl
DeViSoR is abbreviated for "Design and Visualization of Software Resource". The DeViSoRGrid application is part of that software family and is primarily used for the following tasks, so far in 2D only: * Geometry generation * Manual coarse mesh generation * Grid visualisation at all levels All of this can be done in a very confortable manner using a simple point and click interface like in common vector-based image processing software. Both the reliable FEAT file format and the new FEAST format with integrated parallelism are supported. WWW: http://www.featflow.de/ PR: 75973 Submitted by: Pedro F. Giffuni <giffunip@asme.org>
2005-01-21 20:03:52 +01:00
SUBDIR += devisor
A Density functional software. This software has a unique design based upon the DFT++ algebraic framework introduced in Computer Physics Communications 128, 1-45 (June 2000). This framework allows us to transparently separate the computational guts (cache optimization, parallelization, etc.) from the introduction of new representations (plane waves, wavelets) and new physics (new density functionals, linear response theory, dielectric solutions). The software is fully cache and register optimized, and runs in serial, threaded, MPI and mixed threaded-MPI parallel environments.
2004-03-20 05:50:45 +01:00
SUBDIR += dft++
Input/Output Data base interface for use in the ELMER FEM package. Elmer is an open-source computational tool for multi-physics problems. Elmer includes physical models of fluid dynamics, structural mechanics, electromagnetics and heat transfer. These are described by partial differential equations which Elmer solves by the Finite Element Method (FEM) Submitted by: Pedro F. Giffuni <giffunip@asme.org>
2006-04-24 21:49:57 +02:00
SUBDIR += elmer-eio
ElmerSolver - the Solution of Partial Differential Equations. ElmerSolver is thus an independent module that processes the computational mesh and the model input file containing references to the selected equations and model parameters. ElmerSolver makes the equations into a discrete form, handles coupled systems, non-linearities and time-dependences, and provides output data for visualization. Submitted by: Pedro F. Giffuni <giffunip@asme.org>
2006-04-24 21:54:02 +02:00
SUBDIR += elmer-fem
HUTIter library for use in the Elmer FEM package. Elmer is an open-source computational tool for multi-physics problems. Elmer includes physical models of fluid dynamics, structural mechanics, electromagnetics and heat transfer. These are described by partial differential equations which Elmer solves by the Finite Element Method (FEM). Submitted by: Pedro F. Giffuni <giffunip@asme.org>
2006-04-24 21:53:14 +02:00
SUBDIR += elmer-hutiter
MATC language library used by Elmer FEM package. Submitted by: Pedro F. Giffuni <giffunip@asme.org>
2006-04-24 21:50:53 +02:00
SUBDIR += elmer-matc
A Mesh Generation Utility for use with the ELMER FEM package. Elmer is an open-source computational tool for multi-physics problems. Elmer includes physical models of fluid dynamics, structural mechanics, electromagnetics and heat transfer. These are described by partial differential equations which Elmer solves by the Finite Element Method (FEM) Submitted by: Pedro F. Giffuni <giffunip@asme.org>
2006-04-24 21:46:15 +02:00
SUBDIR += elmer-meshgen2d
ElmerFront - the Graphical User Interface. ElmerFront is a tool for initializing the computational process in Elmer. It communicates with external software producing geometrical data, i.e., CAD files and computational meshes. ElmerFront generates its own finite element meshes, allows the user to build mathematical models graphically, and finally produces input data for ElmerSolver. Submitted by: Pedro F. Giffuni <giffunip@asme.org>
2006-04-24 21:54:49 +02:00
SUBDIR += elmerfront
ElmerGrid is a utility program for fast creation of structured 2D and extruded and rotated 3D geometries. ElmerGrid is independent but fully supports ElmerSolver and ElmerPost. It may be used to create linear, quadratic and cubic triangles and rectangles. It has also versatile capabilities in mesh manipulation. ElmerGrid may also be used in grid manipulation. ElmerGrid may, for example, be used to transfer different mesh formats to that understood by ElmerSolver or ElmerPost. ElmerGrid also includes mesh partitioning routines that have been optimized for ElmerSolver. The partitioning may be done by METIS or by a simple geometric division. Submitted by: Pedro F. Giffuni <giffunip@asme.org>
2006-04-24 21:48:58 +02:00
SUBDIR += elmergrid
add euler 1.60.4 A program computes with real and complex numbers and matrices
2002-05-14 05:59:02 +02:00
SUBDIR += euler
Add fastcap , a three-dimensional capacitance extraction program. PR: ports/93968 Submitted by: Pedro Giffuni <giffunip@asme.org>
2006-03-15 11:36:29 +01:00
SUBDIR += fastcap
Add fasthenry , a multipole-accelerated inductance analysis program. PR: ports/93969 Submitted by: Pedro Giffuni <giffunip@asme.org>
2006-03-15 11:38:00 +01:00
SUBDIR += fasthenry
. Welcome felt to the science category. PR: 58178 Submitted by: Pedro F. Giffuni <giffunip@yahoo.com>
2003-11-08 10:08:52 +01:00
SUBDIR += felt
add flounder 0.32a A quick way to visualize regularly spaced 4D data
2002-10-14 22:11:17 +02:00
SUBDIR += flounder
Add gave, a gtk+ based grid data analyser and viewer written in Ruby. PR: ports/64249 Submitted by: Shin'ya Murakami <murakami@ahs.scitec.kobe-u.ac.jp>
2004-03-14 17:52:34 +01:00
SUBDIR += gave
Add gchempaint, a 2D chemical structure editor for GNOME 2. PR: 50539 Submitted by: Pav Lucistnik <pav@oook.cz>
2003-04-08 02:09:55 +02:00
SUBDIR += gchempaint
Add gchemutils a set of C++ class and GTK+-2 widgets related to chemistry. PR: 50538 Submitted by: Pav Lucistnik <pav@oook.cz>
2003-04-08 02:04:57 +02:00
SUBDIR += gchemutils
add gdis 0.73.3 Display and manipulation of isolated molecules and periodic systems
2002-03-05 04:36:20 +01:00
SUBDIR += gdis
Add gerris 0.6.0, a scientific CFD simulator. Gerris is an Open Source Free Software library for the solution of partial differential equations describing fluid flow. Gerris is supported by NIWA (National Institute of Water and Atmospheric research) and by the Marsden Fund of the Royal Society of New Zealand. The code is written entirely in C and uses both the GLib Library and the GTS Library for geometrical functions and object-oriented programming. PR: 86297 Submitted by: Oliver Dunkl <odunkl (at) gmx.net>
2005-09-25 14:45:46 +02:00
SUBDIR += gerris
Add getdp 1.0.0, a rather general finite element solver using mixed finite elements. Suggested by: Pedro F. Giffuni.
2004-11-15 23:18:09 +01:00
SUBDIR += getdp
Add new port science/ghemical a computational chemistry software package
2003-05-04 04:33:52 +02:00
SUBDIR += ghemical
GDL - GNU Data Language - is a free IDL (Interactive Data Language) compatible incremental compiler (i.e. runs IDL programs). IDL is a registered trademark of Research Systems Inc. (see: <http://www.rsinc.com/>) Remark: slave port for Python module intentionnally not yet committed. WWW: http://gnudatalanguage.sourceforge.net/
2005-10-31 19:48:23 +01:00
SUBDIR += gnudatalanguage
Gramps (Genealogical Research and Analysis Management Programming System) is an open source genealogy program. It is written in Python, using the GTK/GNOME interface. WWW: http://gramps.sourceforge.net PR: ports/62171 Submitted by: Andreas Fehlner <fehlner@gmx.de>
2004-02-01 04:09:52 +01:00
SUBDIR += gramps
New port science/gromacs GROMACS is a versatile package to perform molecular dynamics, i.e. simulate the Newtonian equations of motion for systems with hundreds to millions of particles, and also the World's fastest Molecular Dynamics under GPL. PR: 71211 Submitted by: Stephen Montgomery-Smith <stephen@math.missouri.edu> Reviewed by: Bruno Afonso <brunomiguel@dequim.ist.utl.pt>
2004-10-19 03:36:11 +02:00
SUBDIR += gromacs
A program for doing calculation on Smith Chart, similar in functionality to xsmc but with a simpler user interface; written with GNU/GTK library and released under GNU/GPL. Written by Lapo Pieri IK5NAX WWW: http://www.qsl.net/ik5nax PR: ports/93224 Submitted by: Diane Bruce <db (at) db.net> - VA3DB
2006-03-19 21:51:14 +01:00
SUBDIR += gsmc
Add gsystem, a virtual reality simulation framework, specialised on life and evolution simulation. I'm a main developer of this framework and I will also keep the FreeBSD port up-to-date, as I'm using FreeBSD as my primary platform. See http://www.g-system.at for details. PR: ports/75466 Submitted by: Raphael Langerhorst <raphael-langerhorst@gmx.at>
2004-12-29 00:30:00 +01:00
SUBDIR += gsystem
Unhook hdf* ports in graphics, hook them in science.
2004-02-25 23:55:01 +01:00
SUBDIR += hdf
SUBDIR += hdf5
Add isaac-cfd 4.2, Integrated Solution Algorithm for Arbitrary Configuration. PR: 75529 Submitted by: Pedro F. Giffuni
2004-12-29 21:46:47 +01:00
SUBDIR += isaac-cfd
add kmovisto 0.5.1 A real 3-D molecule viewer
2003-10-24 06:19:28 +02:00
SUBDIR += kmovisto
Add kst 0.97. kst is a program for looking at data streams. It can plot: - x-y plots - power spectra - histograms - equations (including equations of data streams). - data in files which are being updated as data is being logged, in which case it can act as a plotter for a chart recorder. - much more You can use the mouse to rapidly zoom into interesting parts of the plots. In addition to a complete GUI, kst has a convenient command line interface for rapid access to plotting data in files. kst can read data from stdin. It provides a DCOP interface for remote manipulation, and supports several file formats in use in scientific projects around the world. WWW: http://omega.astro.utoronto.ca/kst/ WWW: http://extragear.kde.org/apps/kst.php
2004-04-30 17:44:32 +02:00
SUBDIR += kst
Add lamprop 1.3.1. Lamprop takes in input file describing the lay-up and constituent materials of a fiber-reinforced composite laminate, and calculates some mechanical and other properties. The submitter is the original author of the software, and will maintain the port. PR: 81066 Submitted by: Roland Smith <rsmith (at) xs4all.nl>
2005-05-15 23:44:02 +02:00
SUBDIR += lamprop
add libctl 2.2 Control Language Library
2003-04-04 09:28:22 +02:00
SUBDIR += libctl
Add libsvm 2.33, a library for Support Vector Machines. PR: 32997 Submitted by: Chia-Hsing Yu <davidyu@oio.cx>
2001-12-19 04:44:59 +01:00
SUBDIR += libsvm
Slave port to science/libsvm PR: ports/73981 Submitted by: Rong-En Fan <rafan(at)infor.org>
2004-12-11 05:52:40 +01:00
SUBDIR += libsvm-python
add mayavi 1.1 The MayaVi Data Visualizer
2002-03-09 11:58:55 +01:00
SUBDIR += mayavi
New port for mbdyn, which is a MultiBody Dynamics simulation software. It comes with lots of libraries etc. There are two knobs which are in development at the moment so I disabled them with an IGNORE message. They need some work and maybe some testing. PR: ports/81136 Submitted by: Kay Lehmann <kay_lehmann@web.de>
2005-05-22 17:50:06 +02:00
SUBDIR += mbdyn
McStas - Monte Carlo simulation of neutron instruments McStas is an ongoing project to create a general tool for simulating neutron scattering instruments. The project is conducted at Risoe National Laboratory in cooperation with the ILL. McStas is based on a compiler that reads a high-level specification language defining the instrument to be simulated and produces C code that performs the Monte Carlo Simulation. WWW: http://neutron.risoe.dk/ PR: ports/66031 Submitted by: Joerg Pulz <Joerg.Pulz@frm2.tum.de>
2005-02-18 15:17:20 +01:00
SUBDIR += mcstas
MINC (Medical Imaging NetCDF) is a medical imaging data format and an associated set of tools and libraries. MINC was created in 1993 by Peter Neelin at the McConnell Brain Imaging Centre of the Montreal Neurological Institute. Many others have contributed to the design and implementation MINC over the years. PR: ports/91918 Submitted by: Jason W. Bacon <bacon (at) smithers.neuro.mcw.edu>
2006-02-12 16:30:03 +01:00
SUBDIR += minc
add mmtk 2.2 An Open Source program library for molecular simulation applications PR: 42332 Submitted by: Glenn Johnson <glennpj@charter.net>
2002-09-16 11:26:20 +02:00
SUBDIR += mmtk
add mpb 1.4.2 MIT Photonic-Bands
2003-04-04 12:22:55 +02:00
SUBDIR += mpb
New port: xmakemol - a motif molecule viewer program PR: ports/27981 Submitted by: Chi Zhang <chizhang@midway.uchicago.edu>
2001-09-12 18:36:24 +02:00
SUBDIR += mpqc
add mpqc-mpich PR: 40631 Submitted by: Nakata Maho <chat95@mbox.kyoto-inet.or.jp>
2002-07-16 08:53:52 +02:00
SUBDIR += mpqc-mpich
Repocopy math/netcdf to science/netcdf, along with cdf, hdf and hdf5. PR: 92497 Submitted by: /me Repocopied by: marcus
2006-01-30 23:19:24 +01:00
SUBDIR += netcdf
add oases 2.2 Ocean Acoustics and Seismic Exploration Synthesis PR: 38548 Submitted by: Heiner Strau? <heiner@bilch.com>
2002-05-28 05:31:29 +02:00
SUBDIR += oases
Add omnetpp, a public-source, component-based, modular and open-architecture simulation environment with strong GUI support and an embeddable simulation kernel. Its primary application area is the simulation of communication networks and because of its generic and flexible architecture, it has been successfully used in other areas like the simulation of IT systems, queueing networks, hardware architectures and business processes as well. PR: ports/73920 Submitted by: Bjoern Koenig <bkoenig@cs.tu-berlin.de>
2004-11-15 23:53:44 +01:00
SUBDIR += omnetpp
add openbabel 1.100.0 Chemistry file translation program
2003-01-05 18:04:59 +01:00
SUBDIR += openbabel
The OpenFOAM (Open Field Operation and Manipulation) CFD Toolbox can simulate anything from complex fluid flows involving chemical reactions, turbulence and heat transfer, to solid dynamics, electromagnetics and the pricing of financial options. WWW: http://www.opencfd.co.uk/openfoam/index.html PR: ports/91886 Submitted by: thierry
2006-01-22 11:13:06 +01:00
SUBDIR += openfoam
Add ovt 2.3, the Orbit Visualization Tool. PR: 57860 Submitted by: Mykola Khotyaintsev <ko@nest.irfu.se>
2004-03-24 00:34:29 +01:00
SUBDIR += ovt
Add p5-Chemistry-Elements 0.91, perl extension for working with Chemical Elements. PR: 33412 Submitted by: Seamus Venasse <svenasse@polaris.ca>
2002-02-08 07:15:14 +01:00
SUBDIR += p5-Chemistry-Elements
New port: ParaView is a powerful scientific visualization application, designed with the need to visualize large data sets in mind.
2005-06-14 07:41:20 +02:00
SUBDIR += paraview
The PSI3 suite of quantum chemical programs is designed for efficient, high-accuracy calculations of properties of small to medium-sized molecules. The package's current capabilities include a variety of Hartree-Fock, coupled cluster, complete-active-space self-consistent-field, and multi-reference configuration interaction models. Molecular point-group symmetry is utilized throughout to maximize efficiency.
2004-03-19 10:32:49 +01:00
SUBDIR += psi3
PAIDA is pure Python scientific analysis package and implements AIDA (Abstract Interfaces for Data Analysis). PR: ports/83599 Submitted by: Vsevolod Stakhov <vsevolod@highsecure.ru>
2005-07-18 18:22:48 +02:00
SUBDIR += py-paida
add py-scipy 0.3 Scientific tools for Python
2004-08-26 10:37:09 +02:00
SUBDIR += py-scipy
- Move emulators/qcl -> science/qcl on maintainer's request. Repocopy by: marcus
2005-02-10 09:44:55 +01:00
SUBDIR += qcl
Add ruby-dcl, a ruby interface to DCL, a scienific graphical library. Add ruby-dcl-gtk, a slave port for ruby-dcl with gtk patches. PR: ports/62873, ports/62874 Submitted by: <murashin@edamame.summing.com>
2004-02-28 00:54:14 +01:00
SUBDIR += ruby-dcl
Add ruby-gphys, a multi-purpose class to handle gridded physical quantities for Ruby. PR: ports/64248 Submitted by: Shin'ya Murakami <murakami@ahs.scitec.kobe-u.ac.jp>
2004-03-14 17:34:51 +01:00
SUBDIR += ruby-gphys
SIMLIB/C++ is the SIMulation LIBrary for C++ programming language. You can create models directly in C++ language with the use of predefined simulation tools from the library. SIMLIB allows object-oriented description of models based on simulation abstractions. Current version allows a description of continuous, discrete, combined, 2D/3D vector, and fuzzy models. Requested by: Roman Divacky
2004-11-27 22:38:03 +01:00
SUBDIR += simlib
. Add a port of the Szip scientific compression library, used by current versions of HDF: "Szip is an implementation of the extended-Rice lossless compression algorithm. WWW: http://hdf.ncsa.uiuc.edu/doc_resource/SZIP/"
2005-03-17 20:30:00 +01:00
SUBDIR += szip
Add a port of udunits: The Unidata units library, udunits, supports conversion of unit specifications between formatted and binary forms, arithmetic manipulation of unit specifications, and conversion of values between compatible scales of measurement. WWW: http://www.unidata.ucar.edu/packages/udunits/ Obtained from: Gentoo (partially)
2005-01-14 22:52:08 +01:00
SUBDIR += udunits
Add V_Sim, a program to visualize atomic structures such as crystals, grain boundaries and so on.
2005-12-10 22:45:28 +01:00
SUBDIR += v_sim
add vis5d+ 1.2.1 An OpenGL-based volumetric visualization program for scientific datasets
2002-01-09 15:51:38 +01:00
SUBDIR += vis5d+
Add vmd, a molecular visualization program for displaying, animating, and analyzing large biomolecular systems using 3-D graphics and built-in scripting. PR: ports/70509 Submitted by: Stephen Montgomery-Smith <stephen@math.missouri.edu>
2004-08-21 18:34:57 +02:00
SUBDIR += vmd
Add x11iraf 1.3.1, which provides graphical tools to work with IRAF. PR: 70816 Submitted by: David Syphers.
2004-12-27 00:08:06 +01:00
SUBDIR += x11iraf
add xloops-ginac 0.1.3 A program calculating Feynman diagrams
2002-10-15 12:02:15 +02:00
SUBDIR += xloops-ginac
New port: xmakemol - a motif molecule viewer program PR: ports/27981 Submitted by: Chi Zhang <chizhang@midway.uchicago.edu>
2001-09-12 18:36:24 +02:00
SUBDIR += xmakemol
Add new categories science and ukrainian.
2001-03-24 22:40:17 +01:00
.include <bsd.port.subdir.mk>
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