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Charlie Li 9a80a6ee5e
devel/py-setuptools: convert individual consumers to ${PY_SETUPTOOLS} 
Currently a no-op, but in the future outputs the correct setuptools
port depending on whether USES_PYTHON=distutils is specified.

With hat: python
PR: 270510, 270358
2023-07-17 20:53:09 -04:00
..
abyss biology/abyss: Fix build with llvm15 2023-06-07 09:25:09 +02:00
ad2vcf Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
artemis Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
atac-seq *: Bump PORTREVISIONs for math/mpc update to 1.3.1 2023-04-23 09:09:58 +00:00
augustus */*: bump PORTREVISION after the upgrade of SuiteSparse 2023-07-01 18:11:11 +02:00
avida Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
babel Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
bamtools Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
bamutil Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
barrnap biology/barrnap: Update descr 2022-11-24 19:12:18 -08:00
bbmap Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
bcf-score biology/bcf-score: Unbreak build with clang 16 2023-07-16 08:19:06 -05:00
bcftools biology/bcftools: Update to 1.17 2023-02-24 17:30:58 -06:00
bedtools biology/bedtools: Update to 2.31.0 2023-04-28 20:03:07 -05:00
bfc Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
bifrost biology/bifrost: Portability fixes 2023-07-16 08:40:30 -05:00
bio-mocha biology/bio-mocha: Update to 1.16 2023-01-05 17:21:03 -06:00
bioawk Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
biococoa audio/opus: bump consumers after update to 1.4 2023-04-25 17:17:15 +02:00
biolibc biology/biolibc: Update to 0.2.4.3 2023-06-10 07:15:29 -05:00
biolibc-tools biology/biolibc-tools: Update to 0.1.4.6 2023-06-10 06:57:56 -05:00
bioparser Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
biosig */*: bump PORTREVISION after the upgrade of SuiteSparse 2023-07-01 18:11:11 +02:00
biosoup biology/biosoup: Update 0.10.0-2 → 0.11.0 2023-05-19 00:54:16 -07:00
biostar-tools audio/opus: bump consumers after update to 1.4 2023-04-25 17:17:15 +02:00
bolt-lmm */*: bump all direct Boost cunsumers 2023-04-27 21:25:55 +03:00
bowtie Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
bowtie2 biology/bowtie2: Update to 2.5.1 2023-01-21 16:30:48 -06:00
bwa Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
canu */*: Refactor java/openjdk7 removal 2023-04-04 13:10:53 -05:00
cd-hit Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
cdbfasta biology/cdbfasta: Update to 2023.07.10 2023-07-11 10:40:27 -05:00
checkm all: remove explicit versions in USES=python for "3.x+" 2023-06-27 21:34:34 +02:00
chip-seq biology/chip-seq: Metaport for ChIP-Seq analysis 2023-06-14 16:23:37 -05:00
clustal-omega Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
clustalw biology/clustalw: Unbreak build for clang 16 2023-07-15 18:18:42 -05:00
cufflinks */*: bump all direct Boost cunsumers 2023-04-27 21:25:55 +03:00
cytoscape biology/cytoscape: Broken on armv6, armv7 2022-12-10 23:41:04 -08:00
ddocent *: Bump PORTREVISIONs for math/mpc update to 1.3.1 2023-04-23 09:09:58 +00:00
diamond biology/diamond: Update to 2.1.8 2023-07-08 00:45:48 -03:00
dsr-pdb */*: bump all direct Boost cunsumers 2023-04-27 21:25:55 +03:00
edlib Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
emboss biology/emboss: Ignore with mysql 8.0 2023-02-01 04:39:38 -06:00
erminej Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
exonerate Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
fasda biology/fasda: Update to 0.1.3 2023-06-10 06:57:56 -05:00
fasta Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
fasta3 Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
fastahack Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
fastdnaml Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
fastool Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
fastp biology/fastp: Update to 0.23.4 2023-05-31 10:40:00 -05:00
fastq-trim biology/fastq-trim: Update to 0.1.2 2022-12-11 15:24:05 -06:00
fastqc biology/fastqc: Update to 0.12.1 2023-03-04 18:17:20 -06:00
fasttree Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
fastx-toolkit biology/fastx-toolkit: Unbreak build on 14-CURRENT 2023-03-07 11:28:13 -06:00
figtree Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
flash Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
fluctuate Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
freebayes biology/freebayes: Drop redundant tabixpp dep 2023-01-22 10:42:34 -06:00
garlic Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
gatk biology/gatk: Update 4.3.0.0 → 4.4.0.0 2023-06-04 15:02:58 -07:00
gcta *: Bump PORTREVISIONs for math/mpc update to 1.3.1 2023-04-23 09:09:58 +00:00
gemma *: Bump PORTREVISIONs for math/mpc update to 1.3.1 2023-04-23 09:09:58 +00:00
generand Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
gff2ps biology/gff2ps: drop maintainership 2023-05-21 16:20:36 +00:00
gffread Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
gmap Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
gperiodic accessibility/at-spi2-core: update to 2.46.0 2023-03-02 06:23:10 +01:00
graphlan Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
groopm all: remove explicit versions in USES=python for "3.x+" 2023-06-27 21:34:34 +02:00
haplohseq biology/haplohseq: Fix build on FreeBSD 14 2023-07-09 11:37:39 -05:00
hhsuite *: Bump PORTREVISIONs for math/mpc update to 1.3.1 2023-04-23 09:09:58 +00:00
hisat2 Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
hmmer all: remove explicit versions in USES=python for "3.x+" 2023-06-27 21:34:34 +02:00
htslib biology/htslib: fix build on armv7 2023-04-18 23:55:29 +02:00
hyphy biology/hyphy: fix build on armv7 2023-06-30 14:00:28 +02:00
igv audio/opus: bump consumers after update to 1.4 2023-04-25 17:17:15 +02:00
infernal all: remove explicit versions in USES=python for "3.x+" 2023-06-27 21:34:34 +02:00
iolib Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
iqtree *: Bump PORTREVISIONs for math/mpc update to 1.3.1 2023-04-23 09:09:58 +00:00
jalview biology/jalview: Fix build by using gradle-7.6.1 instead of gradle-8.0.1 2023-06-18 02:58:53 -07:00
jellyfish biology/jellyfish: Bump PORTREVISION for biology/htslib update 2023-01-05 19:24:44 -06:00
kallisto biology/kallisto: Tag only for 64-bit architectures 2023-07-14 11:12:06 -05:00
kmcp biology/kmcp: Update 0.9.2 → 0.9.3 2023-07-17 00:09:00 -07:00
lamarc biology/lamarc: Refactor after wxgtk28 removal 2022-12-31 04:54:58 +01:00
libbigwig biology/libbigwig: Update 0.4.6 → 0.4.7 2023-07-17 00:09:00 -07:00
libcombine biology/libcombine: Fix build with libsbml 5.20.0 2023-05-27 12:24:05 +08:00
libgff Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
libgtextutils Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
libneurosim all: remove explicit versions in USES=python for "3.x+" 2023-06-27 21:34:34 +02:00
libnuml Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
libsbml all: remove explicit versions in USES=python for "3.x+" 2023-06-27 21:34:34 +02:00
libsedml biology/libsedml: Fix build with libsbml 5.20.0 2023-05-27 12:24:05 +08:00
linux-foldingathome Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
locarna biology/locarna: Fix tests 2023-07-17 09:22:42 -07:00
mafft Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
mapm3 Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
mashmap biology/mashmap: New port: Fast approximate aligner for long DNA sequences 2023-07-10 18:44:34 -07:00
megahit biology/megahit: Add cmake patch to respect ports build flags 2022-11-24 08:10:13 -06:00
metaeuk biology/metaeuk: Add NATIVE option 2023-07-14 17:31:14 -07:00
migrate Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
minimap2 biology/minimap2: Update to 2.25 2023-04-29 09:53:40 -05:00
mmseqs2 Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
molden *: Bump PORTREVISIONs for math/mpc update to 1.3.1 2023-04-23 09:09:58 +00:00
mothur Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
mrbayes Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
mummer Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
muscle Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
ncbi-blast+ all: remove explicit versions in USES=python for "3.x+" 2023-06-27 21:34:34 +02:00
ncbi-cxx-toolkit biology/ncbi-cxx-toolkit: Update 26.0.1 → 27.0.0 2023-06-26 21:41:39 -07:00
ncbi-entrez-direct all: Bump PORTREVISION after lang/go{119,120} update 2023-04-08 10:13:25 -05:00
ncbi-toolkit biology/ncbi-toolkit: Fix build with llvm15 2023-06-06 22:45:25 +02:00
ncbi-vdb *: Bump PORTREVISIONs for math/mpc update to 1.3.1 2023-04-23 09:09:58 +00:00
ngs-sdk biology/ngs-sdk: Update 2.11.2 → 3.0.1 2023-06-26 15:51:40 -07:00
p5-AcePerl Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
p5-Bio-ASN1-EntrezGene Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
p5-Bio-Cluster Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
p5-Bio-Coordinate Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
p5-Bio-Das Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
p5-Bio-Das-Lite Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
p5-Bio-DB-EMBL Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
p5-Bio-DB-NCBIHelper Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
p5-Bio-FeatureIO Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
p5-Bio-GFF3 Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
p5-Bio-Glite Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
p5-Bio-Graphics Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
p5-Bio-MAGETAB Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
p5-Bio-NEXUS Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
p5-Bio-Phylo Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
p5-Bio-SCF Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
p5-Bio-Variation Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
p5-BioPerl Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
p5-BioPerl-Run Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
p5-transdecoder biology/p5-transdecoder: Update to 5.7.0 2023-01-30 16:30:54 -06:00
p5-TrimGalore all: remove explicit versions in USES=python for "3.x+" 2023-06-27 21:34:34 +02:00
paml biology/paml: Update to 4.10.7 2023-07-08 00:46:53 -03:00
pbbam biology/pbbam: Bump PORTREVISION for biology/htslib update 2023-01-05 19:25:09 -06:00
pbseqan Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
peak-classifier all: remove explicit versions in USES=python for "3.x+" 2023-06-27 21:34:34 +02:00
pear-merger Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
phrap Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
phred Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
phyml biology/phyml: fix build on non-x86 2023-05-08 10:25:50 +02:00
picard-tools */*: Refactor java/openjdk7 removal 2023-04-04 13:10:53 -05:00
plink *: Bump PORTREVISIONs for math/mpc update to 1.3.1 2023-04-23 09:09:58 +00:00
pooler biology/pooler: update to 1.86 2022-12-19 08:56:15 +01:00
primer3 Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
prodigal Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
prodigy-lig all: remove explicit versions in USES=python for "3.x+" 2023-06-27 21:34:34 +02:00
protomol Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
psi88 *: Bump PORTREVISIONs for math/mpc update to 1.3.1 2023-04-23 09:09:58 +00:00
py-bcbio-gff biology/py-bcbio-gff: Update to 0.7.0 2023-03-16 17:32:06 -05:00
py-biom-format all: remove explicit versions in USES=python for "3.x+" 2023-06-27 21:34:34 +02:00
py-biopython all: remove explicit versions in USES=python for "3.x+" 2023-06-27 21:34:34 +02:00
py-biosig *: Bump PORTREVISIONs for math/mpc update to 1.3.1 2023-04-23 09:09:58 +00:00
py-bx-python all: remove explicit versions in USES=python for "3.x+" 2023-06-27 21:34:34 +02:00
py-crossmap all: remove explicit versions in USES=python for "3.x+" 2023-06-27 21:34:34 +02:00
py-cutadapt all: remove explicit versions in USES=python for "3.x+" 2023-06-27 21:34:34 +02:00
py-deeptools biology/py-deeptools: Update to 3.5.2 2023-06-19 07:09:17 -05:00
py-deeptoolsintervals */*: rename CHEESESHOP to PYPI in MASTER_SITES 2023-01-11 18:58:34 +03:00
py-dna-features-viewer *: Bump PORTREVISIONs for math/mpc update to 1.3.1 2023-04-23 09:09:58 +00:00
py-dnaio all: remove explicit versions in USES=python for "3.x+" 2023-06-27 21:34:34 +02:00
py-ete3 all: remove explicit versions in USES=python for "3.x+" 2023-06-27 21:34:34 +02:00
py-Genesis-PyAPI all: remove explicit versions in USES=python for "3.x+" 2023-06-27 21:34:34 +02:00
py-gffutils all: remove explicit versions in USES=python for "3.x+" 2023-06-27 21:34:34 +02:00
py-goatools all: remove explicit versions in USES=python for "3.x+" 2023-06-27 21:34:34 +02:00
py-gtfparse all: remove explicit versions in USES=python for "3.x+" 2023-06-27 21:34:34 +02:00
py-hits all: remove explicit versions in USES=python for "3.x+" 2023-06-27 21:34:34 +02:00
py-libnuml biology/py-libnuml: Allow build with swig 4.1.0+ 2023-04-19 02:05:12 +08:00
py-libsedml biology/py-libsedml: Allow build with swig 4.1.0+ 2023-04-19 02:05:12 +08:00
py-loompy all: remove explicit versions in USES=python for "3.x+" 2023-06-27 21:34:34 +02:00
py-macs2 all: remove explicit versions in USES=python for "3.x+" 2023-06-27 21:34:34 +02:00
py-mrcfile *: Bump PORTREVISIONs for math/mpc update to 1.3.1 2023-04-23 09:09:58 +00:00
py-multiqc all: remove explicit versions in USES=python for "3.x+" 2023-06-27 21:34:34 +02:00
py-ont-fast5-api *: Bump PORTREVISIONs for math/mpc update to 1.3.1 2023-04-23 09:09:58 +00:00
py-orange3-bioinformatics all: remove explicit versions in USES=python for "3.x+" 2023-06-27 21:34:34 +02:00
py-orange3-single-cell all: remove explicit versions in USES=python for "3.x+" 2023-06-27 21:34:34 +02:00
py-pandas-charm all: remove explicit versions in USES=python for "3.x+" 2023-06-27 21:34:34 +02:00
py-py2bit */*: rename CHEESESHOP to PYPI in MASTER_SITES 2023-01-11 18:58:34 +03:00
py-pybigwig biology/py-pybigwig: Update to 0.3.21 2023-04-01 16:10:15 -05:00
py-pyfaidx all: remove explicit versions in USES=python for "3.x+" 2023-06-27 21:34:34 +02:00
py-pyrodigal all: remove explicit versions in USES=python for "3.x+" 2023-06-27 21:34:34 +02:00
py-pysam all: remove explicit versions in USES=python for "3.x+" 2023-06-27 21:34:34 +02:00
py-PySCeS biology/py-PySCeS: Update 1.0.3 → 1.1.0 2023-06-26 08:53:04 -07:00
py-python-libsbml all: remove explicit versions in USES=python for "3.x+" 2023-06-27 21:34:34 +02:00
py-pywgsim */*: rename CHEESESHOP to PYPI in MASTER_SITES 2023-01-11 18:58:34 +03:00
py-resdk devel/py-setuptools: convert individual consumers to ${PY_SETUPTOOLS} 2023-07-17 20:53:09 -04:00
py-scikit-bio all: remove explicit versions in USES=python for "3.x+" 2023-06-27 21:34:34 +02:00
py-valerius biology/py-valerius: New port: Python bioinformatics tools 2022-10-03 21:06:22 -07:00
py-xenaPython all: remove explicit versions in USES=python for "3.x+" 2023-06-27 21:34:34 +02:00
pyfasta all: remove explicit versions in USES=python for "3.x+" 2023-06-27 21:34:34 +02:00
python-nexus all: remove explicit versions in USES=python for "3.x+" 2023-06-27 21:34:34 +02:00
rainbow Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
rampler *: Bump PORTREVISIONs for math/mpc update to 1.3.1 2023-04-23 09:09:58 +00:00
readseq Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
recombine Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
rna-seq *: Bump PORTREVISIONs for math/mpc update to 1.3.1 2023-04-23 09:09:58 +00:00
ruby-bio Mk/**ruby.mk: Switch from USE_RUBY=yes to USES=ruby 2023-01-14 17:08:33 -06:00
rubygem-bio Mk/**ruby.mk: Switch from USE_RUBY=yes to USES=ruby 2023-01-14 17:08:33 -06:00
rubygem-bio-executables Mk/**ruby.mk: Switch from USE_RUBY=yes to USES=ruby 2023-01-14 17:08:33 -06:00
rubygem-bio-old-biofetch-emulator Mk/**ruby.mk: Switch from USE_RUBY=yes to USES=ruby 2023-01-14 17:08:33 -06:00
rubygem-bio-shell Mk/**ruby.mk: Switch from USE_RUBY=yes to USES=ruby 2023-01-14 17:08:33 -06:00
sam2pairwise Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
samtools biology/samtools: Update to 1.17 2023-02-24 17:27:21 -06:00
scrm Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
seaview Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
seqan Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
seqan-apps Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
seqan1 Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
seqan3 *: Bump PORTREVISIONs for math/mpc update to 1.3.1 2023-04-23 09:09:58 +00:00
seqio Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
seqkit biology/seqkit: Update 2.4.0 → 2.5.0 2023-07-16 21:37:53 -07:00
seqtk biology/seqtk: Update to 1.4 2023-05-23 17:42:13 -05:00
sigviewer *: Bump PORTREVISIONs for math/mpc update to 1.3.1 2023-04-23 09:09:58 +00:00
sim4 Remove WWW lines that have been moved into Makefiles 2022-09-08 17:46:38 +02:00
slclust Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
smithwaterman Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
snpeff all: remove explicit versions in USES=python for "3.x+" 2023-06-27 21:34:34 +02:00
spoa *: Bump PORTREVISIONs for math/mpc update to 1.3.1 2023-04-23 09:09:58 +00:00
sra-tools *: Bump PORTREVISIONs for math/mpc update to 1.3.1 2023-04-23 09:09:58 +00:00
stacks Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
star biology/star: Bump PORTREVISION for biology/htslib update 2023-01-05 19:27:16 -06:00
stringtie Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
subread Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
tabixpp biology/tabixpp: Deprecate 2023-01-22 11:01:57 -06:00
taxonkit biology/taxonkit: Update 0.14.1 → 0.14.2 2023-04-14 22:02:19 -07:00
treekin *: Bump PORTREVISIONs for math/mpc update to 1.3.1 2023-04-23 09:09:58 +00:00
treepuzzle Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
trimadap Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
trimmomatic Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
tRNAscan-SE biology/tRNAscan-SE: Update to 2.0.11 2022-10-12 12:45:24 +01:00
ucsc-userapps all: remove explicit versions in USES=python for "3.x+" 2023-06-27 21:34:34 +02:00
ugene Mk/Uses: always use colon for build/run suffix 2022-09-11 12:20:14 +02:00
unikmer all: Bump PORTREVISION after lang/go{119,120} update 2023-04-08 10:13:25 -05:00
vcf-split biology/vcf-split: Update to 0.1.5-4 2022-12-11 14:11:33 -06:00
vcf2hap Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
vcflib biology/vcflib: Update to 1.0.7 2023-02-09 09:35:32 -06:00
vcftools biology/vcftools: Unbreak build with clang 16 2023-07-15 20:29:00 -05:00
velvet Remove WWW entries moved into port Makefiles 2022-09-07 23:58:51 +02:00
viennarna biology/viennarna: Remove unnecessary library from .pc file; Correct pkg-descr 2023-07-16 14:38:39 -07:00
vsearch biology/vsearch: Update to 2.23.0 2023-07-08 14:10:45 -05:00
vt biology/vt: Bump PORTREVISION for biology/htslib update 2023-01-05 19:19:19 -06:00
wfa2-lib */*: Sunset 12.3-RELEASE from ports tree 2023-03-30 18:59:51 -05:00
wise */*: llvm15 build fixes 2023-05-17 18:30:15 +02:00
Makefile biology/locarna: New port: LocARNA provides several tools for the structural analysis of RNA 2023-07-16 14:54:52 -07:00