Charlie Li 9a80a6ee5e devel/py-setuptools: convert individual consumers to ${PY_SETUPTOOLS} ... Currently a no-op, but in the future outputs the correct setuptools port depending on whether USES_PYTHON=distutils is specified. With hat: python PR: 270510, 270358		2023-07-17 20:53:09 -04:00
..
abyss	biology/abyss: Fix build with llvm15	2023-06-07 09:25:09 +02:00
ad2vcf	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
artemis	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
atac-seq	*: Bump PORTREVISIONs for math/mpc update to 1.3.1	2023-04-23 09:09:58 +00:00
augustus	*/*: bump PORTREVISION after the upgrade of SuiteSparse	2023-07-01 18:11:11 +02:00
avida	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
babel	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
bamtools	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
bamutil	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
barrnap	biology/barrnap: Update descr	2022-11-24 19:12:18 -08:00
bbmap	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
bcf-score	biology/bcf-score: Unbreak build with clang 16	2023-07-16 08:19:06 -05:00
bcftools	biology/bcftools: Update to 1.17	2023-02-24 17:30:58 -06:00
bedtools	biology/bedtools: Update to 2.31.0	2023-04-28 20:03:07 -05:00
bfc	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
bifrost	biology/bifrost: Portability fixes	2023-07-16 08:40:30 -05:00
bio-mocha	biology/bio-mocha: Update to 1.16	2023-01-05 17:21:03 -06:00
bioawk	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
biococoa	audio/opus: bump consumers after update to 1.4	2023-04-25 17:17:15 +02:00
biolibc	biology/biolibc: Update to 0.2.4.3	2023-06-10 07:15:29 -05:00
biolibc-tools	biology/biolibc-tools: Update to 0.1.4.6	2023-06-10 06:57:56 -05:00
bioparser	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
biosig	*/*: bump PORTREVISION after the upgrade of SuiteSparse	2023-07-01 18:11:11 +02:00
biosoup	biology/biosoup: Update 0.10.0-2 → 0.11.0	2023-05-19 00:54:16 -07:00
biostar-tools	audio/opus: bump consumers after update to 1.4	2023-04-25 17:17:15 +02:00
bolt-lmm	*/*: bump all direct Boost cunsumers	2023-04-27 21:25:55 +03:00
bowtie	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
bowtie2	biology/bowtie2: Update to 2.5.1	2023-01-21 16:30:48 -06:00
bwa	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
canu	*/*: Refactor java/openjdk7 removal	2023-04-04 13:10:53 -05:00
cd-hit	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
cdbfasta	biology/cdbfasta: Update to 2023.07.10	2023-07-11 10:40:27 -05:00
checkm	all: remove explicit versions in USES=python for "3.x+"	2023-06-27 21:34:34 +02:00
chip-seq	biology/chip-seq: Metaport for ChIP-Seq analysis	2023-06-14 16:23:37 -05:00
clustal-omega	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
clustalw	biology/clustalw: Unbreak build for clang 16	2023-07-15 18:18:42 -05:00
cufflinks	*/*: bump all direct Boost cunsumers	2023-04-27 21:25:55 +03:00
cytoscape	biology/cytoscape: Broken on armv6, armv7	2022-12-10 23:41:04 -08:00
ddocent	*: Bump PORTREVISIONs for math/mpc update to 1.3.1	2023-04-23 09:09:58 +00:00
diamond	biology/diamond: Update to 2.1.8	2023-07-08 00:45:48 -03:00
dsr-pdb	*/*: bump all direct Boost cunsumers	2023-04-27 21:25:55 +03:00
edlib	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
emboss	biology/emboss: Ignore with mysql 8.0	2023-02-01 04:39:38 -06:00
erminej	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
exonerate	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
fasda	biology/fasda: Update to 0.1.3	2023-06-10 06:57:56 -05:00
fasta	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
fasta3	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
fastahack	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
fastdnaml	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
fastool	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
fastp	biology/fastp: Update to 0.23.4	2023-05-31 10:40:00 -05:00
fastq-trim	biology/fastq-trim: Update to 0.1.2	2022-12-11 15:24:05 -06:00
fastqc	biology/fastqc: Update to 0.12.1	2023-03-04 18:17:20 -06:00
fasttree	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
fastx-toolkit	biology/fastx-toolkit: Unbreak build on 14-CURRENT	2023-03-07 11:28:13 -06:00
figtree	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
flash	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
fluctuate	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
freebayes	biology/freebayes: Drop redundant tabixpp dep	2023-01-22 10:42:34 -06:00
garlic	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
gatk	biology/gatk: Update 4.3.0.0 → 4.4.0.0	2023-06-04 15:02:58 -07:00
gcta	*: Bump PORTREVISIONs for math/mpc update to 1.3.1	2023-04-23 09:09:58 +00:00
gemma	*: Bump PORTREVISIONs for math/mpc update to 1.3.1	2023-04-23 09:09:58 +00:00
generand	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
gff2ps	biology/gff2ps: drop maintainership	2023-05-21 16:20:36 +00:00
gffread	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
gmap	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
gperiodic	accessibility/at-spi2-core: update to 2.46.0	2023-03-02 06:23:10 +01:00
graphlan	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
groopm	all: remove explicit versions in USES=python for "3.x+"	2023-06-27 21:34:34 +02:00
haplohseq	biology/haplohseq: Fix build on FreeBSD 14	2023-07-09 11:37:39 -05:00
hhsuite	*: Bump PORTREVISIONs for math/mpc update to 1.3.1	2023-04-23 09:09:58 +00:00
hisat2	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
hmmer	all: remove explicit versions in USES=python for "3.x+"	2023-06-27 21:34:34 +02:00
htslib	biology/htslib: fix build on armv7	2023-04-18 23:55:29 +02:00
hyphy	biology/hyphy: fix build on armv7	2023-06-30 14:00:28 +02:00
igv	audio/opus: bump consumers after update to 1.4	2023-04-25 17:17:15 +02:00
infernal	all: remove explicit versions in USES=python for "3.x+"	2023-06-27 21:34:34 +02:00
iolib	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
iqtree	*: Bump PORTREVISIONs for math/mpc update to 1.3.1	2023-04-23 09:09:58 +00:00
jalview	biology/jalview: Fix build by using gradle-7.6.1 instead of gradle-8.0.1	2023-06-18 02:58:53 -07:00
jellyfish	biology/jellyfish: Bump PORTREVISION for biology/htslib update	2023-01-05 19:24:44 -06:00
kallisto	biology/kallisto: Tag only for 64-bit architectures	2023-07-14 11:12:06 -05:00
kmcp	biology/kmcp: Update 0.9.2 → 0.9.3	2023-07-17 00:09:00 -07:00
lamarc	biology/lamarc: Refactor after wxgtk28 removal	2022-12-31 04:54:58 +01:00
libbigwig	biology/libbigwig: Update 0.4.6 → 0.4.7	2023-07-17 00:09:00 -07:00
libcombine	biology/libcombine: Fix build with libsbml 5.20.0	2023-05-27 12:24:05 +08:00
libgff	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
libgtextutils	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
libneurosim	all: remove explicit versions in USES=python for "3.x+"	2023-06-27 21:34:34 +02:00
libnuml	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
libsbml	all: remove explicit versions in USES=python for "3.x+"	2023-06-27 21:34:34 +02:00
libsedml	biology/libsedml: Fix build with libsbml 5.20.0	2023-05-27 12:24:05 +08:00
linux-foldingathome	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
locarna	biology/locarna: Fix tests	2023-07-17 09:22:42 -07:00
mafft	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
mapm3	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
mashmap	biology/mashmap: New port: Fast approximate aligner for long DNA sequences	2023-07-10 18:44:34 -07:00
megahit	biology/megahit: Add cmake patch to respect ports build flags	2022-11-24 08:10:13 -06:00
metaeuk	biology/metaeuk: Add NATIVE option	2023-07-14 17:31:14 -07:00
migrate	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
minimap2	biology/minimap2: Update to 2.25	2023-04-29 09:53:40 -05:00
mmseqs2	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
molden	*: Bump PORTREVISIONs for math/mpc update to 1.3.1	2023-04-23 09:09:58 +00:00
mothur	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
mrbayes	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
mummer	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
muscle	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
ncbi-blast+	all: remove explicit versions in USES=python for "3.x+"	2023-06-27 21:34:34 +02:00
ncbi-cxx-toolkit	biology/ncbi-cxx-toolkit: Update 26.0.1 → 27.0.0	2023-06-26 21:41:39 -07:00
ncbi-entrez-direct	all: Bump PORTREVISION after lang/go{119,120} update	2023-04-08 10:13:25 -05:00
ncbi-toolkit	biology/ncbi-toolkit: Fix build with llvm15	2023-06-06 22:45:25 +02:00
ncbi-vdb	*: Bump PORTREVISIONs for math/mpc update to 1.3.1	2023-04-23 09:09:58 +00:00
ngs-sdk	biology/ngs-sdk: Update 2.11.2 → 3.0.1	2023-06-26 15:51:40 -07:00
p5-AcePerl	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
p5-Bio-ASN1-EntrezGene	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
p5-Bio-Cluster	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
p5-Bio-Coordinate	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
p5-Bio-Das	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
p5-Bio-Das-Lite	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
p5-Bio-DB-EMBL	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
p5-Bio-DB-NCBIHelper	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
p5-Bio-FeatureIO	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
p5-Bio-GFF3	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
p5-Bio-Glite	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
p5-Bio-Graphics	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
p5-Bio-MAGETAB	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
p5-Bio-NEXUS	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
p5-Bio-Phylo	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
p5-Bio-SCF	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
p5-Bio-Variation	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
p5-BioPerl	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
p5-BioPerl-Run	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
p5-transdecoder	biology/p5-transdecoder: Update to 5.7.0	2023-01-30 16:30:54 -06:00
p5-TrimGalore	all: remove explicit versions in USES=python for "3.x+"	2023-06-27 21:34:34 +02:00
paml	biology/paml: Update to 4.10.7	2023-07-08 00:46:53 -03:00
pbbam	biology/pbbam: Bump PORTREVISION for biology/htslib update	2023-01-05 19:25:09 -06:00
pbseqan	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
peak-classifier	all: remove explicit versions in USES=python for "3.x+"	2023-06-27 21:34:34 +02:00
pear-merger	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
phrap	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
phred	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
phyml	biology/phyml: fix build on non-x86	2023-05-08 10:25:50 +02:00
picard-tools	*/*: Refactor java/openjdk7 removal	2023-04-04 13:10:53 -05:00
plink	*: Bump PORTREVISIONs for math/mpc update to 1.3.1	2023-04-23 09:09:58 +00:00
pooler	biology/pooler: update to 1.86	2022-12-19 08:56:15 +01:00
primer3	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
prodigal	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
prodigy-lig	all: remove explicit versions in USES=python for "3.x+"	2023-06-27 21:34:34 +02:00
protomol	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
psi88	*: Bump PORTREVISIONs for math/mpc update to 1.3.1	2023-04-23 09:09:58 +00:00
py-bcbio-gff	biology/py-bcbio-gff: Update to 0.7.0	2023-03-16 17:32:06 -05:00
py-biom-format	all: remove explicit versions in USES=python for "3.x+"	2023-06-27 21:34:34 +02:00
py-biopython	all: remove explicit versions in USES=python for "3.x+"	2023-06-27 21:34:34 +02:00
py-biosig	*: Bump PORTREVISIONs for math/mpc update to 1.3.1	2023-04-23 09:09:58 +00:00
py-bx-python	all: remove explicit versions in USES=python for "3.x+"	2023-06-27 21:34:34 +02:00
py-crossmap	all: remove explicit versions in USES=python for "3.x+"	2023-06-27 21:34:34 +02:00
py-cutadapt	all: remove explicit versions in USES=python for "3.x+"	2023-06-27 21:34:34 +02:00
py-deeptools	biology/py-deeptools: Update to 3.5.2	2023-06-19 07:09:17 -05:00
py-deeptoolsintervals	*/*: rename CHEESESHOP to PYPI in MASTER_SITES	2023-01-11 18:58:34 +03:00
py-dna-features-viewer	*: Bump PORTREVISIONs for math/mpc update to 1.3.1	2023-04-23 09:09:58 +00:00
py-dnaio	all: remove explicit versions in USES=python for "3.x+"	2023-06-27 21:34:34 +02:00
py-ete3	all: remove explicit versions in USES=python for "3.x+"	2023-06-27 21:34:34 +02:00
py-Genesis-PyAPI	all: remove explicit versions in USES=python for "3.x+"	2023-06-27 21:34:34 +02:00
py-gffutils	all: remove explicit versions in USES=python for "3.x+"	2023-06-27 21:34:34 +02:00
py-goatools	all: remove explicit versions in USES=python for "3.x+"	2023-06-27 21:34:34 +02:00
py-gtfparse	all: remove explicit versions in USES=python for "3.x+"	2023-06-27 21:34:34 +02:00
py-hits	all: remove explicit versions in USES=python for "3.x+"	2023-06-27 21:34:34 +02:00
py-libnuml	biology/py-libnuml: Allow build with swig 4.1.0+	2023-04-19 02:05:12 +08:00
py-libsedml	biology/py-libsedml: Allow build with swig 4.1.0+	2023-04-19 02:05:12 +08:00
py-loompy	all: remove explicit versions in USES=python for "3.x+"	2023-06-27 21:34:34 +02:00
py-macs2	all: remove explicit versions in USES=python for "3.x+"	2023-06-27 21:34:34 +02:00
py-mrcfile	*: Bump PORTREVISIONs for math/mpc update to 1.3.1	2023-04-23 09:09:58 +00:00
py-multiqc	all: remove explicit versions in USES=python for "3.x+"	2023-06-27 21:34:34 +02:00
py-ont-fast5-api	*: Bump PORTREVISIONs for math/mpc update to 1.3.1	2023-04-23 09:09:58 +00:00
py-orange3-bioinformatics	all: remove explicit versions in USES=python for "3.x+"	2023-06-27 21:34:34 +02:00
py-orange3-single-cell	all: remove explicit versions in USES=python for "3.x+"	2023-06-27 21:34:34 +02:00
py-pandas-charm	all: remove explicit versions in USES=python for "3.x+"	2023-06-27 21:34:34 +02:00
py-py2bit	*/*: rename CHEESESHOP to PYPI in MASTER_SITES	2023-01-11 18:58:34 +03:00
py-pybigwig	biology/py-pybigwig: Update to 0.3.21	2023-04-01 16:10:15 -05:00
py-pyfaidx	all: remove explicit versions in USES=python for "3.x+"	2023-06-27 21:34:34 +02:00
py-pyrodigal	all: remove explicit versions in USES=python for "3.x+"	2023-06-27 21:34:34 +02:00
py-pysam	all: remove explicit versions in USES=python for "3.x+"	2023-06-27 21:34:34 +02:00
py-PySCeS	biology/py-PySCeS: Update 1.0.3 → 1.1.0	2023-06-26 08:53:04 -07:00
py-python-libsbml	all: remove explicit versions in USES=python for "3.x+"	2023-06-27 21:34:34 +02:00
py-pywgsim	*/*: rename CHEESESHOP to PYPI in MASTER_SITES	2023-01-11 18:58:34 +03:00
py-resdk	devel/py-setuptools: convert individual consumers to ${PY_SETUPTOOLS}	2023-07-17 20:53:09 -04:00
py-scikit-bio	all: remove explicit versions in USES=python for "3.x+"	2023-06-27 21:34:34 +02:00
py-valerius	biology/py-valerius: New port: Python bioinformatics tools	2022-10-03 21:06:22 -07:00
py-xenaPython	all: remove explicit versions in USES=python for "3.x+"	2023-06-27 21:34:34 +02:00
pyfasta	all: remove explicit versions in USES=python for "3.x+"	2023-06-27 21:34:34 +02:00
python-nexus	all: remove explicit versions in USES=python for "3.x+"	2023-06-27 21:34:34 +02:00
rainbow	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
rampler	*: Bump PORTREVISIONs for math/mpc update to 1.3.1	2023-04-23 09:09:58 +00:00
readseq	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
recombine	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
rna-seq	*: Bump PORTREVISIONs for math/mpc update to 1.3.1	2023-04-23 09:09:58 +00:00
ruby-bio	Mk/**ruby.mk: Switch from USE_RUBY=yes to USES=ruby	2023-01-14 17:08:33 -06:00
rubygem-bio	Mk/**ruby.mk: Switch from USE_RUBY=yes to USES=ruby	2023-01-14 17:08:33 -06:00
rubygem-bio-executables	Mk/**ruby.mk: Switch from USE_RUBY=yes to USES=ruby	2023-01-14 17:08:33 -06:00
rubygem-bio-old-biofetch-emulator	Mk/**ruby.mk: Switch from USE_RUBY=yes to USES=ruby	2023-01-14 17:08:33 -06:00
rubygem-bio-shell	Mk/**ruby.mk: Switch from USE_RUBY=yes to USES=ruby	2023-01-14 17:08:33 -06:00
sam2pairwise	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
samtools	biology/samtools: Update to 1.17	2023-02-24 17:27:21 -06:00
scrm	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
seaview	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
seqan	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
seqan-apps	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
seqan1	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
seqan3	*: Bump PORTREVISIONs for math/mpc update to 1.3.1	2023-04-23 09:09:58 +00:00
seqio	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
seqkit	biology/seqkit: Update 2.4.0 → 2.5.0	2023-07-16 21:37:53 -07:00
seqtk	biology/seqtk: Update to 1.4	2023-05-23 17:42:13 -05:00
sigviewer	*: Bump PORTREVISIONs for math/mpc update to 1.3.1	2023-04-23 09:09:58 +00:00
sim4	Remove WWW lines that have been moved into Makefiles	2022-09-08 17:46:38 +02:00
slclust	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
smithwaterman	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
snpeff	all: remove explicit versions in USES=python for "3.x+"	2023-06-27 21:34:34 +02:00
spoa	*: Bump PORTREVISIONs for math/mpc update to 1.3.1	2023-04-23 09:09:58 +00:00
sra-tools	*: Bump PORTREVISIONs for math/mpc update to 1.3.1	2023-04-23 09:09:58 +00:00
stacks	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
star	biology/star: Bump PORTREVISION for biology/htslib update	2023-01-05 19:27:16 -06:00
stringtie	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
subread	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
tabixpp	biology/tabixpp: Deprecate	2023-01-22 11:01:57 -06:00
taxonkit	biology/taxonkit: Update 0.14.1 → 0.14.2	2023-04-14 22:02:19 -07:00
treekin	*: Bump PORTREVISIONs for math/mpc update to 1.3.1	2023-04-23 09:09:58 +00:00
treepuzzle	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
trimadap	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
trimmomatic	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
tRNAscan-SE	biology/tRNAscan-SE: Update to 2.0.11	2022-10-12 12:45:24 +01:00
ucsc-userapps	all: remove explicit versions in USES=python for "3.x+"	2023-06-27 21:34:34 +02:00
ugene	Mk/Uses: always use colon for build/run suffix	2022-09-11 12:20:14 +02:00
unikmer	all: Bump PORTREVISION after lang/go{119,120} update	2023-04-08 10:13:25 -05:00
vcf-split	biology/vcf-split: Update to 0.1.5-4	2022-12-11 14:11:33 -06:00
vcf2hap	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
vcflib	biology/vcflib: Update to 1.0.7	2023-02-09 09:35:32 -06:00
vcftools	biology/vcftools: Unbreak build with clang 16	2023-07-15 20:29:00 -05:00
velvet	Remove WWW entries moved into port Makefiles	2022-09-07 23:58:51 +02:00
viennarna	biology/viennarna: Remove unnecessary library from .pc file; Correct pkg-descr	2023-07-16 14:38:39 -07:00
vsearch	biology/vsearch: Update to 2.23.0	2023-07-08 14:10:45 -05:00
vt	biology/vt: Bump PORTREVISION for biology/htslib update	2023-01-05 19:19:19 -06:00
wfa2-lib	*/*: Sunset 12.3-RELEASE from ports tree	2023-03-30 18:59:51 -05:00
wise	*/*: llvm15 build fixes	2023-05-17 18:30:15 +02:00
Makefile	biology/locarna: New port: LocARNA provides several tools for the structural analysis of RNA	2023-07-16 14:54:52 -07:00