Blixem is an interactive browser of pairwise alignments that have
been stacked up in a "master-slave" multiple alignment; it is not
a 'true' multiple alignment but a 'one-to-many' alignment.
Belvu is a multiple sequence alignment viewer and phylogenetic tool.
Dotter is a graphical dot-matrix program for detailed comparison
of two sequences.
WWW: http://www.sanger.ac.uk/resources/software/seqtools/
PR: ports/183801
Submitted by: Kurt Jaeger <fbsd-ports opsec.eu>
pure-stlvec and pure-stlmap. These addons provide Pure interfaces to a
selection of containers provided by the C++ Standard Library, specialized
to hold pointers to arbitrary Pure expressions.
WWW: http://docs.pure-lang.googlecode.com/hg/pure-stllib.html
PR: ports/165865
Submitted by: Zhihao Yuan <lichray@gmail.com>
Approved by: wg (mentor)
- Update to 0.16.12
- Rename from net-p2p/libtorrent-rasterbar-16 to net-p2p/libtorrent-rasterbar
- Remove conflict with deprecated Port
- Add pkg-message
- Support STAGEDIR
net-p2p/libtorrent-rasterbar-python
- Rename from net-p2p/libtorrent-rasterbar-python-16 to net-p2p/libtorrent-rasterbar-python
- Change comment and MASTERDIR
- Change dependency to net-p2p/libtorrent-rasterbar
- Add SLAVE_PORT=yes
Approved by: wg (mentor)
2013-11-01 sysutils/mktool
2013-11-01 databases/ruby-memcache: Development has been abandoned upstream
2013-11-01 deskutils/blogtk: This is dead upstream and is no longer being maintained
2013-10-22 games/magicmaze: Does not work with Ruby 1.9
2013-10-10 lang/ruby18: Please use lang/ruby19
2013-10-10 www/rubygem-mongrel_cluster: Does not work with Ruby 1.9
2013-10-10 www/rubygem-mongrel: Does not work with Ruby 1.9
2013-10-10 www/rubygem-rails-app-installer: Does not work with Ruby 1.9
2013-10-22 www/typo: Does not work with Ruby 1.9
2013-10-10 devel/rubygem-linecache: Does not work with Ruby 1.9
2013-10-21 devel/rubygem-rascut: Does not work with Ruby 1.9
2013-10-21 devel/rubygem-ruby-debug-ide: Does not work with Ruby 1.9
2013-10-21 devel/rubygem-ruby-debug: Does not work with Ruby 1.9
2013-10-21 japanese/gorua: Does not work with Ruby 1.9
2013-10-10 x11-toolkits/ruby-gtk: Does not work with Ruby 1.9
- use PKGNAMESUFFIX instead LATEST_LINK
- whitespace cleanup
- svn mv */bugzilla to */bugzilla40
- add vuxml entry
4.4.1, 4.2.7, and 4.0.11 Security Advisory
Wednesday Oct 16th, 2013
Summary
=======
Bugzilla is a Web-based bug-tracking system used by a large number of
software projects. The following security issues have been discovered
in Bugzilla:
* A CSRF vulnerability in process_bug.cgi affecting Bugzilla 4.4 only
can lead to a bug being edited without the user consent.
* A CSRF vulnerability in attachment.cgi can lead to an attachment
being edited without the user consent.
* Several unfiltered parameters when editing flagtypes can lead to XSS.
* Due to an incomplete fix for CVE-2012-4189, some incorrectly filtered
field values in tabular reports can lead to XSS.
All affected installations are encouraged to upgrade as soon as
possible.
[1] even bugzilla40 gets upstream fixes an upgrade to bugzilla42/44 is recommend
Security: vid e135f0c9-375f-11e3-80b7-20cf30e32f6d
CVE-2013-1733
CVE-2013-1734
CVE-2013-1742
CVE-2013-1743
- As OpenGL rendering now works, remove the -devel suffix
- Enable staging
- Use new LIB_DEPENDS format
- Add new UPNP option
- Handle -liconv removal on -CURRENT
2013-10-10 www/ruby-nora: Does not work with Ruby 1.9
www/aswiki
2013-10-10 textproc/ruby-amrita: Does not work with Ruby 1.9
2013-10-15 security/flowtag: Does not work with Ruby 1.9
2013-10-10 lang/ruby-lua4: Does not work with Ruby 1.9
2013-10-15 dns/dnsdoctor: Does not work with Ruby 1.9
2013-10-10 audio/ruby-xmms: Does not work with Ruby 1.9
2013-10-10 databases/ruby-interbase: Does not work with Ruby 1.9
2013-10-10 databases/ruby-bdb1: Does not work with Ruby 1.9
2013-10-10 devel/ruby-fam: Does not work with Ruby 1.9
2013-10-10 devel/ruby-rcov: Does not work with Ruby 1.9
2013-10-10 devel/ruby-rudl: Does not work with Ruby 1.9
2013-10-10 devel/ruby-gemfinder: Does not work with Ruby 1.9
2013-10-10 devel/ruby-sysvipc: Does not work with Ruby 1.9
2013-10-10 devel/rubygem-sdl: Does not work with Ruby 1.9
2013-10-10 devel/rubygem-ncurses: Does not work with Ruby 1.9
2013-10-10 devel/rubygem-parsetree: Does not work with Ruby 1.9
2013-10-10 devel/ruby-sexp: Does not work with Ruby 1.9
2013-10-10 devel/rubygem-getopt-declare: Does not work with Ruby 1.9
2013-10-10 devel/ruby-slang: Does not work with Ruby 1.9
2013-10-10 japanese/ruby-slang: Does not work with Ruby 1.9
2013-10-10 devel/ruby-gettext: Does not work with Ruby 1.9
2013-10-10 devel/ruby-jttui: Does not work with Ruby 1.9
2013-10-10 devel/ruby-mmap: Does not work with Ruby 1.9
2013-10-10 devel/ruby-racc: Does not work with Ruby 1.9
2013-10-10 devel/rubygem-rparsec: Does not work with Ruby 1.9
2013-10-10 devel/rubygem-zoom: Does not work with Ruby 1.9
2013-10-10 games/ruby-exmars: Does not work with Ruby 1.9
2013-10-10 graphics/ruby-pgplot: Does not work with Ruby 1.9
2013-10-10 graphics/ruby-opengl: Does not work with Ruby 1.9
2013-10-10 graphics/rubygem-turing: Does not work with Ruby 1.9
2013-10-10 japanese/ruby-chasen: Does not work with Ruby 1.9
2013-10-10 japanese/ruby-gyokuro: Does not work with Ruby 1.9
2013-10-10 japanese/ruby-rdic: Does not work with Ruby 1.9
2013-10-10 lang/ruby-mode.el: Does not work with Ruby 1.9
2013-10-10 misc/rubygem-ohcount: Does not work with Ruby 1.9
2013-10-10 net-im/rubygem-xmpp4r: Does not work with Ruby 1.9
2013-10-10 security/ruby-acl: Does not work with Ruby 1.9
2013-10-10 textproc/ruby-xslt: Does not work with Ruby 1.9
2013-10-10 textproc/ruby-erbscan: Does not work with Ruby 1.9
2013-10-10 textproc/ruby-mwdom: Does not work with Ruby 1.9
2013-10-10 textproc/ruby-xmlscan-old: Does not work with Ruby 1.9
2013-10-10 textproc/rubygem-formosa: Does not work with Ruby 1.9
2013-10-10 textproc/rubygem-htmltools: Does not work with Ruby 1.9
2013-10-10 www/ruby-cruisecontrolrb: Does not work with Ruby 1.9
2013-10-10 www/rubygem-rubyfulsoup: Does not work with Ruby 1.9
2013-10-10 x11/ruby-gtktrayicon: Does not work with Ruby 1.9
project has been taken over by a new developer and renamed:
http://www.bigsister.ch/doxygenfilter/news.html
- Update to 1.61
- Support staging
PR: ports/167134
Submitted by: Sergey Golyashov <svvord@mail.ru>
and this was forgotten.
This should unbreak portupgrade, which gets confused about the old entry.
PR: ports/182812
Submitted by: Alexey <alexey@kouznetsov.com>
- add stage support
- move from net-mgmt/nrpe2 -> net-mgmt/nrpe
to reflect the port and package name
Changes:
2.15 - 09/06/2013
-----------------
- Now compiles on HP-UX (Grant Byers)
- Added support for IPv6 (Leo Baltus, Eric Stanley)
- This port is no longer being used anywhere and was causing conflict with
www/py-beautifulsoup32, consider using it instead
Approved by: portmgr (bapt)
2013-10-01 sysutils/puppet26: End of Life from april 2013. Upgrade to 2.7 or 3.x.
2013-10-01 www/varnish2: No update since january 2011. Upgrade to Varnish 3.
- Added sysutils/pcbsd-utils-qt4
- Retired some old ports replaced by these
* ports-mgmt/pbi-manager
* sysutils/libpcbsd
* sysutils/pbreg
* sysutils/warden
A port of a tool which tries to guess the primary partition table of a PC-type
hard disk in case the primary partition table in sector 0 is damaged, incorrect
or deleted. The guessed table can be written to a file or device.
Supported (guessable) filesystem or partition types: DOS/Windows FAT, Linux
ext2 and swap, OS/2 HPFS, Windows NTFS, FreeBSD and Solaris/x86 disklabels,
Minix FS, Reiser FS
WWW: http://brzitwa.de/mb/gpart/index.html (outdated)
The following kde-l10n-* language ports were dropped from KDE4 several
releases ago and have not been restored: csb, eo, fy, gu, id, kn, mai,
mk, ml. Since there is no indication they will be restored any time
soon, let's just remove these IGNORED ports.
PR: ports/180552
Approved by: rakuco (KDE)
2013-08-28 lang/gdc: Broken for more than 6 month
2013-08-31 net-im/cli-msn: MSN Messenger service terminated 30 APR 2013
2013-09-01 x11-toolkits/wxd: Depends on deprecated lang/gdc
2013-09-01 security/openvpn22: Please migrate to a newer OpenVPN version
2013-09-01 devel/dsss: Depends on expired lang/gdc
2013-09-01 graphics/qcamview: Broken on FreeBSD 8 and newer
2013-09-01 www/cacheboy15-devel: Broken on FreeBSD 8 and newer
2013-09-01 graphics/spcaview: Broken on FreeBSD 8 and newer
2013-09-01 comms/uticom: Broken on FreeBSD 8 and newer
2013-09-01 net/ipex: Broken on FreeBSD 8 and newer
2013-09-01 graphics/phpsview: Broken on FreeBSD 8 and newer
2013-09-01 misc/usbrh: Broken on FreeBSD 8 and newer
2013-09-01 net/atmsupport: Broken on FreeBSD 8 and newer
2013-09-01 comms/ib-kmod: Broken on FreeBSD 8 and newer
2013-09-01 net/libproxy-mozjs: Does not work with newer libxul
2013-09-01 www/helixplugin: Does not work with newer libxul
2013-09-01 deskutils/chmsee: Does not work with newer libxul
2013-09-01 www/moonshine: Does not work with newer libxul
2013-09-01 x11/ggiterm: Unmaintained and broken
2013-09-01 graphics/libggigcp: Unmaintained
2013-09-01 graphics/libggimisc: Unmaintained
2013-09-01 graphics/libggiwmh: Unmaintained
2013-09-01 devel/libgiigic: Unmaintained
2013-09-01 games/koth: Unmaintained
Update dependent packages with more recent releases.
Remove old and bit-rotted ones.
Switch to using clang 3.3 and libobjc2 1.7 by default, so modern Objective-C features work out of the box and remove a lot of configurable options for sub-optimal (and, often, unsupported / deprecated upstream) configurations.
Take maintainership of GNUstep-related ports.
Several of the ports left in have scary warnings which mean that they are likely broken in lots of cases. Future commits will fix them.
Approved by: bapt
2013-08-27 lang/ldc-devel: Broken for more than 6 month
2013-08-27 www/mod_smooth_streaming: Broken for more than 6 month
2013-08-27 www/p5-Apache2-Scoreboard: Broken for more than 6 month
2013-08-27 sysutils/avfs: Broken for more than 6 month
2013-08-27 multimedia/mp4split: Broken for more than 6 month
2013-08-27 net-mgmt/noc: Broken for more than 6 month
2013-08-27 sysutils/empower: Broken for more than 6 month
2013-08-27 emulators/xgngeo: Broken for more than 6 month
2013-08-27 graphics/geglmm: Broken for more than 6 month
2013-08-27 sysutils/libumberlog: Broken for more than 6 month
2013-08-27 net/wizd: Broken for more than 6 month
2013-08-27 net-p2p/nicotine-plus: Broken for more than 6 month
2013-08-27 palm/barry: Broken for more than 6 month
2013-08-27 x11-themes/kde-icons-noia-warm: Broken for more than 6 month
2013-08-27 news/lottanzb: Broken for more than 6 month
2013-08-27 textproc/xaira: Broken for more than 6 month
2013-08-27 graphics/f90gl: Broken for more than 6 month
2013-08-27 multimedia/linux-gspca-kmod: Broken for more than 6 month
2013-08-27 x11/cl-clx-sbcl: Broken for more than 6 month
2013-08-27 math/dislin: Broken for more than 6 month
2013-08-27 irc/smuxi: Broken for more than 6 month
2013-08-24 mail/p5-Mail-CClient: Broken for more than 6 month
2013-08-24 net/slbd: Broken on FreeBSD 8 and newer
2013-08-24 comms/hso-kmod: Broken on FreeBSD 8 and newer
OptionsNG-fied.
- Convert makefile header to new format.
- Remove shlib version from LIB_DEPENDS.
- Remove M17N option and make m17n feature always on. It is because
configure script enables m17n feature by default and there is no
practical advantage of disabling it.
- Remove www/w3m-m17n and www/w3m-m17-img because they are now identical
with www/w3m and www/w3m-img.
- Add entry of removed ports to MOVED.
- Update CONFLICTS.
- Adjust dependency of www/emacs-w3m.
- Bump PORTREVISON of w3m ports and www/emacs-w3m.
PR: ports/178189
Submitted by: Yasuhiro KIMURA <yasu@utahime.org>
