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Author SHA1 Message Date
Josselin Poiret ad55ccf9b1
installer: Make dump archive creation optional and selective.
* gnu/installer.scm (installer-program): Let the installer customize
the dump archive.
* gnu/installer/dump.scm (prepare-dump, make-dump): Split make-dump in
prepare-dump, which copies the files necessary for the dump, and
make-dump which creates the archive.
* gnu/installer/record.scm (installer): Add report-page field.  Change
documented return value of exit-error.
* gnu/installer/newt.scm (exit-error): Change arguments to be a string
containing the error.  Let the user choose between exiting and
initiating a dump.
(report-page): Add new variable.
* gnu/installer/newt/page.scm (run-dump-page): New variable.
* gnu/installer/newt/dump.scm: Delete it.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2022-02-02 16:46:44 +01:00
Mathieu Othacehe 0d37a5df7e
installer: Add crash dump upload support.
Suggested-by: Josselin Poiret <dev@jpoiret.xyz>

* gnu/installer/dump.scm: New file.
* gnu/installer/newt/dump.scm: New file.
* gnu/local.mk (INSTALLER_MODULES): Add them.
* gnu/installer/record.scm (<installer>)[dump-page]: New field.
* gnu/installer/steps.scm (%current-result): New variable.
(run-installer-steps): Update it.
* gnu/installer.scm (installer-program): Add tar and gip to the installer
path. Add guile-webutils and gnutls to the Guile extensions. Generate and send
the crash dump report.
* gnu/installer/newt.scm (exit-error): Add a report argument. Display the
report id.
(dump-page): New procedure.
(newt-installer): Update it.
2022-02-02 16:46:42 +01:00
Guillaume Le Vaillant 787b13a5d9
gnu: librecad: Fix build with boost 1.76.
Fixes <https://issues.guix.gnu.org/53694>.

* gnu/packages/patches/librecad-support-for-boost-1.76.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/engineering.scm (librecad)[source]: Use it.
2022-02-01 20:06:25 +01:00
Ludovic Courtès 1ebc702923
gnu: Add Lokke.
* gnu/packages/guile.scm (guile-3.0-for-lokke): New variable.
* gnu/packages/guile-xyz.scm (lokke): New variable.
* gnu/packages/patches/guile-3.0.7-psyntax-nil.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2022-02-01 00:24:22 +01:00
Danny Milosavljevic a0bf73143b
gnu: ruby-mustache: Fix race condition.
* gnu/packages/patches/ruby-mustache-1.1.1-fix-race-condition-tests.patch:
New file.
* gnu/packages/ruby.scm (ruby-mustache)[source]<#:origin>: Add it.
* gnu/local.mk (dist_patch_DATA): Add it.
2022-01-31 16:38:53 +01:00
Ricardo Wurmus 9686c828ed
gnu: python-seaborn: Fix build.
* gnu/packages/python-xyz.scm (python-seaborn)[source]: Add patch.
[arguments]: Add build phase 'patch-more-tests.
* gnu/packages/patches/python-seaborn-2690.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2022-01-31 16:07:40 +01:00
Marius Bakke 9b8839099e
gnu: Remove unused patch.
* gnu/packages/patches/openssl-CVE-2019-1559.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
2022-01-30 17:04:34 +01:00
Marius Bakke 2932c421a3
gnu: OpenSSL: Add 3.0.
* gnu/packages/tls.scm (openssl-3.0): New variable.
* gnu/packages/patches/openssl-3.0-c-rehash-in.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
2022-01-30 17:04:34 +01:00
Liliana Marie Prikler 6589966b97
gnu: audacity: Add fallback to locate ffmpeg via pkg-config.
* gnu/packages/patches/audacity-ffmpeg-fallback.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it here.
* gnu/packages/audio.scm (audacity)[patches]: Use it here.
[inputs]: Add back ffmpeg.
2022-01-30 08:11:00 +01:00
Eric Bavier 1949c8b206
gnu: cpulimit: Fix build with glibc-2.32.
* gnu/packages/patches/cpulimit-with-glib-2.32.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/admin.scm (cpulimit)[source]: Use it.
2022-01-29 00:53:31 -06:00
Maxim Cournoyer 1916d6df6f
gnu: jami-libclient: Properly return the list of audio managers.
* gnu/packages/patches/jami-libclient-audio-managers.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/jami.scm (jami)[source]: Move all patches to...
(%jami-sources): here and add the newly added patch.
2022-01-27 14:01:34 -05:00
Maxim Cournoyer 95a74533f1
gnu: jami: Reduce memory consumption in conversation view.
This fixes <https://git.jami.net/savoirfairelinux/jami-client-qt/-/issues/649>.

* gnu/packages/patches/jami-images-loading.patch: New patch.
* gnu/packages/patches/jami-memory-usage.patch: Likewise.
* gnu/local.mk (dist_patch_DATA): Register them.
* gnu/packages/jami.scm (jami)[source]: Apply them.
2022-01-27 10:51:54 -05:00
Leo Famulari 16ce73d87f
gnu: util-linux: Fix CVE-2021-3995 and CVE-2021-3996.
* gnu/packages/patches/util-linux-CVE-2021-3995.patch,
gnu/packages/patches/util-linux-CVE-2021-3996.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/linux.scm (util-linux)[replacement]: New field.
(util-linux/fixed): New variable.
2022-01-26 13:02:09 -05:00
Ludovic Courtès 3993d33d1c
gnu: polkit: Fix CVE-2021-4034.
* gnu/packages/patches/polkit-CVE-2021-4034.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/polkit.scm (polkit-mozjs)[replacement]: New field.
* gnu/packages/polkit.scm (polkit-mozjs/fixed): New variable.
2022-01-26 17:54:59 +01:00
Liliana Marie Prikler ee751690ce
gnu: gnome-builder: Fix build.
* gnu/packages/patches/gnome-builder-update-libportal.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it here.
* gnu/packages/gnome.scm (gnome-builder)[patches]: Use it here.
[inputs, native-inputs]: Add python.
2022-01-23 12:10:37 +01:00
Marius Bakke c940b0e38e
gnu: behave: Update to 1.2.7.dev2.
* gnu/packages/check.scm (behave): Update to 1.2.7.dev2.
[source]: Switch to GIT-FETCH.  Remove patches.
[arguments]: Remove #:test-target.  Add #:phases.
[propagated-inputs]: Add PYTHON-COLORAMA and PYTHON-CUCUMBER-TAG-EXPRESSIONS.
* gnu/packages/patches/behave-skip-a-couple-of-tests.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
2022-01-22 10:23:01 +01:00
Morgan Smith d0744d8650
gnu: jacal: Update to 1c7.
* gnu/packages/patches/jacal-fix-texinfo.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Delete this.
* gnu/packages/maths.scm (jacal)[source]: Delete this patch.
[version]: Update to 1c7.

Signed-off-by: Oleg Pykhalov <go.wigust@gmail.com>
2022-01-22 12:07:55 +03:00
Remco van 't Veer a7fb50b577
gnu: sssd: Fix build with samba-4.15.3.
* gnu/packages/patches/sssd-fix-samba-4.15.3.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add this.
* gnu/packages/sssd.scm [source]: Add this.
[native-inputs]: Add AUTOCONF.
[arguments]: Add add-config-in phase.

Signed-off-by: Oleg Pykhalov <go.wigust@gmail.com>
2022-01-22 11:28:21 +03:00
Maxim Cournoyer ef451d9164
gnu: gnome-todo: Update to 41.0 and enable tests.
* gnu/packages/patches/gnome-todo-libportal.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/gnome.scm (gnome-todo): Update to 41.0.
[source]: Apply patch.
[arguments]: Use G-exp.
[tests?]: Delete field, enabling tests.
[phases]: Move check phase after install phase.
{pre-check}: Add phase.
[native-inputs]: Re-style.
[inputs]: Likewise.
[description]: Re-indent.
2022-01-22 01:16:23 -05:00
Zhu Zihao 8ed6a8884c
gnu: nix: Update to 2.4.
* gnu/packages/package-management.scm (nix): Update to 2.4.

[source]: Switch to Github repository since upstream no longer provides
tarball.
[native-inputs]: Add autoconf, autoconf-archive, automake, bison, flex, gcc,
googletest, jq, libtool.
[inputs]: Add libarchive, libcpuid, lowdown, zlib.

* gnu/packages/patches/nix-dont-build-html-doc.diff: New file.
* gnu/local.mk(dist_patch_DATA): Add corresponding entry.

Signed-off-by: Oleg Pykhalov <go.wigust@gmail.com>
2022-01-21 16:45:33 +03:00
Felix Gruber 8159cd08d2
gnu: dune-istl: Update to 2.7.1.
* gnu/packages/maths.scm (dune-istl): Update to 2.7.1.
  [arguments]: Parallelize build-tests phase.
  [source](patches) Remove patch that is no longer needed.
* gnu/packages/patches/dune-istl-2.7-fix-non-mpi-tests.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove above patch.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-01-20 15:28:14 +01:00
Mathieu Othacehe 12aeeea4c4
gnu: pulseview: Fix build
* gnu/packages/patches/pulseview-glib-2.68.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/electronics.scm (pulseview): Register it. Also disable the
tests which are failing and remove a trailing #t.
2022-01-20 14:20:13 +01:00
Leo Famulari d331bd0a39
gnu: wpa-wupplicant: Update to 2.10 [security fixes].
See the upstream advisory for more information on the security fixes
contained in these updates:

https://w1.fi/security/2022-1/sae-eap-pwd-side-channel-attack-update-2.txt

* gnu/packages/admin.scm (wpa-supplicant-minimal): Update to 2.10.
[source]: Remove obsolete patches.
* gnu/packages/patches/wpa-supplicant-CVE-2021-27803.patch,
gnu/packages/patches/wpa-supplicant-CVE-2021-30004.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.

Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
2022-01-16 01:00:05 +01:00
Liliana Marie Prikler 03cdd729c6
gnu: audacity: Update to 3.1.3
* gnu/packages/patches/audacity-add-include.patch: Delete file.
* gnu/packages/patches/audacity-build-with-system-portaudio.patch:
Delete file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/audio (audacity): Update to 3.1.3
[inputs]: Use wxwidgets-3.1.  Add linux-libre-headers, libjpeg-turbo, sqlite,
portaudio.
[#:configure-flags]: Update to disable conan during build, prefer system
libraries, and disable features that phone home.
[#:phases]: Add fix-cmake-rpath to ensure correct DT_RUNPATHs.
Adjust comment-out-revision-indent and use-upstream-headers.
[native-search-paths]: Add AUDACITY_MODULES_PATH and AUDACITY_PATH.
2022-01-19 20:47:04 +01:00
Marius Bakke 883227dde1
gnu: python-pydot: Update to 1.4.2.
* gnu/packages/graphviz.scm (python-pydot): Update to 1.4.2.
[source](patches): Remove.
* gnu/packages/patches/python-pydot-regression-test.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
2022-01-18 19:35:55 +01:00
Maxim Cournoyer 6edcf688c0
gnu: gnome-control-center: Update to 41.2.
* gnu/packages/patches/gnome-control-center-libexecdir.patch: Add patch.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/gnome.scm (gnome-control-center): Update to 41.2.
[source]: Apply patch.
[phases]{no-polkit-magic}: New phase.
[native-inputs]: Use new style.  Add python.
[propagated-inputs]: Use new style.  Replace gdk-pixbuf by librsvg.
2022-01-18 12:33:22 -05:00
John Kehayias 5387a9c00e
gnu: Add xmonad-next and ghc-xmonad-contrib-next.
Fixes: <https://issues.guix.gnu.org/issue/52784>.

* gnu/packages/wm.scm (xmonad-next): New variable. Compared to xmonad: Update
to 0.17.0.
[inputs]: Add GHC-DATA-DEFAULT-CLASS, remove GHC-EXTENSIBLE-EXCEPTIONS,
GHC-DATA-DEFAULT, GHC-SEMIGROUPS, and GHC-UTF8-STRING.
[native-inputs]: Add GHC-QUICKCHECK and GHC-QUICKCHECK-CLASSES.
(ghc-xmonad-contrib-next): New variable. Compared to ghc-xmonad-contrib:
Update to 0.17.0.
[propagated-inputs]: Remove GHC-OLD-TIME, GHC-EXTENSIBLE-EXCEPTIONS,
GHC-SEMIGROUPS.
[native-inputs]: Add GHC-QUICKCHECK and GHC-HSPEC.
(xmonad): Inherit from xmonad-next.
(ghc-xmonad-contrib): Inherit from ghc-xmonad-contrib-next.
* gnu/packages/patches/xmonad-next-dynamic-linking.patch: New patch. Update of
xmonad-dynamic-linking.patch to apply to xmonad-next.
* gnu/local.mk: Add it.

Signed-off-by: Lars-Dominik Braun <lars@6xq.net>
2022-01-17 20:29:39 +01:00
Marius Bakke 5da4cbfbd9
gnu: password-store: Ensure compatibility with tree@2.0.
Fixes <https://bugs.gnu.org/53238>, et.al.

* gnu/packages/patches/password-store-tree-compat.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/password-utils.scm (password-store)[source](patches): New field.
2022-01-17 18:23:13 +01:00
Maxim Cournoyer 276f40fdc3
Merge branch 'version-1.4.0'
With resolved conflicts in:
	gnu/packages/gnome.scm
	gnu/packages/openstack.scm
	gnu/packages/python-xyz.scm
2022-01-17 11:47:09 -05:00
Leo Famulari 8636d02955
gnu: binutils: Fix CVE-2021-45078.
This is for the release branch.

Should we also use a graft for the master branch? It would be even
better if we could add a binutils-next package that users could install,
in my opinion.

* gnu/packages/patches/binutils-CVE-2021-45078.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/base.scm (binutils)[source]: Use it.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2022-01-10 11:46:57 -05:00
Maxim Cournoyer b78f0cbff4
gnu: gtk: Update to 4.4.1.
* gnu/packages/patches/gtk-introspection-test.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/gtk.scm (gtk): Update to 4.4.1.
[origin]: Apply new patch.
[phases]{pre-check}: Set TZDIR.
[native-inputs]: Add graphene, python-pygobject and tzdata.
2022-01-10 11:44:37 -05:00
Maxim Cournoyer 7ecc2e3d2b
gnu: shadow: Update to 4.9.
* gnu/packages/admin.scm (shadow): Update to 4.9.
[source]: Remove hurd patch, merged upstream.
[phases]{fix-linking-to-pam}: New phase.
* gnu/packages/patches/shadow-hurd-pctrl.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): De-register it.
2022-01-10 11:44:35 -05:00
Leo Famulari 1684ed6537
gnu: Remove leftover patches for Blender 2.79.
This is a followup to commit 23da063ea3.

* gnu/packages/patches/blender-2.79-gcc8.patch,
gnu/packages/patches/blender-2.79-gcc9.patch,
gnu/packages/patches/blender-2.79-newer-ffmpeg.patch,
gnu/packages/patches/blender-2.79-oiio2.patch,
gnu/packages/patches/blender-2.79-python-3.7-fix.patch,
gnu/packages/patches/blender-2.79-python-3.8-fix.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.
2022-01-09 16:35:20 -05:00
Tobias Geerinckx-Rice 360379200d
Revert "gnu: tree: Fix problem with no output when fd3 is present."
This reverts commit bd4f314bba.
2022-01-09 01:00:00 +01:00
raingloom 63d7e31f20
gnu: passwordsafe: Update to 5.1.
* gnu/packages/gnome.scm (passwordsafe): Update to 5.1.
* gnu/packages/patches/passwordsafe-meson-remove-extra-argument.patch:
  New file.
* gnu/local.mk: Add it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-01-15 23:27:34 +01:00
Danny Milosavljevic 40d5931a60
gnu: libsigrokdecode: Fix build with python 3.9.
* gnu/packages/patches/libsigrokdecode-python3.9-fix.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/electronics.scm (libsigrokdecode)[native-inputs]: Add
automake, autoconf.
[source](patches): New field.
2022-01-15 23:03:31 +01:00
Hartmut Goebel e0ba031ab2
gnu: Add python-piexif.
* gnu/packages/python-xyz.scm (python-piexif): New variable.
* gnu/packages/patches/python-piexif-fix-tests-with-pillow-7.2.patch: New file.
* gnu/packages/python-xyz.scm (dist_patch_DATA): Add it.
2022-01-15 21:35:05 +01:00
Marius Bakke bd4f314bba
gnu: tree: Fix problem with no output when fd3 is present.
* gnu/packages/patches/tree-disable-stddata.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/admin.scm (tree)[source](patches): New field.
2022-01-15 15:18:31 +01:00
Maxim Cournoyer 9d5f14751f
gnu: jami: Fix crash on exit.
* gnu/packages/patches/jami-fix-crash-on-quit.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/jami.scm (jami): Apply it.
2022-01-14 17:36:12 -05:00
Guix Together 564d4e1b3c
gnu: Add myrddin.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add myrddin.scm.
* gnu/packages/myrddin.scm: New file.

Co-authored-by: jgart <jgart@dismail.de>
Co-authored-by: Jorge Acereda <jacereda@gmail.com>
Co-authored-by: Raghav Gururajan <rg@raghavgururajan.name>
Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2022-01-14 22:14:56 +01:00
Leo Famulari 873fda504c
gnu: Calibre: Fix a build failure with recent zeroconf.
Fixes <https://issues.guix.gnu.org/53247>.

* gnu/packages/patches/calibre-fix-zeroconf.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/ebook.scm (calibre)[source]: Use it.
2022-01-14 14:45:17 -05:00
Efraim Flashner a9558ec5e8
gnu: quassel: Update to 0.14.0.
* gnu/packages/irc.scm (quassel): Update to 0.14.0.
[source]: Remove patch.
[inputs]: Add boost, perl, sonnet.
* gnu/packages/patches/quassel-qt-514-compat.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2022-01-14 11:41:20 +02:00
Alex Devaure 2c9902cae9
gnu: lua: Add version 5.4.3.
* gnu/packages/lua.scm (lua-5.4): New variable.
* gnu/packages/patches/lua-5.4-liblua-so.patch,
gnu/packages/patches/lua-5.4-pkgconfig.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2022-01-13 23:11:20 +01:00
kiasoc5 904a6567a8
gnu: bubblewrap: Update to 0.5.0.
* gnu/packages/patches/bubblewrap-fix-locale-in-tests.patch: Add it.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/virtualization.scm (bubblewrap): Update to 0.5.0.
[source]: Add patch.
[arguments]: Adjust test substitutions.
[inputs]: Remove labels.
[native-inputs]: Remove labels.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-01-13 23:11:19 +01:00
Maxim Cournoyer 1ed66d1461
gnu: jami: Update to 20211223.2.37be4c3.
* gnu/packages/patches/pjproject-correct-the-cflags-field.patch: Delete file.
* gnu/packages/patches/pjproject-fix-pkg-config-ldflags.patch: Likewise.
* gnu/local.mk (dist_patch_DATA): De-register them.
* gnu/packages/jami.scm (%jami-version): Update version string.
(%jami-sources): Adjust snippet.
(jami-apply-custom-patches): Use G-Exp.
(pjproject-jami): Use Savoir-faire Linux's fork and update to 2.11-0.e1f389d.
[phases]: Adjust and update accordingly.
(%ffmpeg-default-configure-flags): Capitalize and reword comments.
(ffmpeg-jami)[native-inputs]: Delete field.
[tests?]: Add comment and move into the SUBSTITUTE-KEYWORD-ARGUMENTS use.
[phases]: Use G-Exp and update the list of patches.
(libring): Deprecate and rename to...
(libjami): ... this.  Move the arguments field before the inputs.
[tests?]: Add explanatory comment.
[configure-flags]: Add '--disable-agent', with explanatory comment.
[phases]{change-directory}: Rename to...
{change-directory/maybe}: ... this, to attempt but not enforce a directory
change so as to also support using a Git checkout as source.
{add-lib-dir}: Remove phase.
[inputs]: Use new style.
[native-inputs]: Add cppunit.
(libringclient): Deprecate and rename to...
{jami-libclient}: ... this.
[configure-flags]: Enable LIBWRAP.
[phases]{change-directory/maybe}: Renamed from change-directory, for reasons
described above.
[inputs]: Adjust accordingly.
(jami-gnome): Move the input fields below the arguments field.
[phases]{change-directory/maybe}: Renamed from change-directory, for reasons
described above.
[inputs]: Rename libringclient to jami-libclient and use new style.
[native-inputs]: Use new style.
[propagated-inputs]: Delete field.
(jami-qt): Deprecate and rename to...
(jami): ... this.
[phases]{change-directory/maybe}: Renamed from change-directory, for reasons
described above.
[native-inputs]: Add python.
[inputs]: Adjust accordingly.
[propagated-inputs]: Delete field.
2022-01-13 00:57:52 -05:00
Maxim Cournoyer f787ccca42
gnu: pjproject: Apply patch to install the libpjsua2 shared library.
* gnu/packages/patches/pjproject-install-libpjsua2.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/telephony.scm (pjproject): Apply it.
2022-01-13 00:57:52 -05:00
Pierre Langlois a9678953ea
gnu: nautilus: Fix build with libportal-0.5.
* gnu/packages/patches/nautilus-add-libportal-gtk3.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gnome.scm (nautilus)[source]: Use it.
2022-01-11 23:57:44 +00:00
Marius Bakke 30c3ab3807
gnu: QEMU: Update to 6.2.0.
* gnu/packages/patches/qemu-CVE-2021-20203.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/virtualization.scm (qemu): Update to 6.2.0.
[source](patches): Remove obsolete patch.
2022-01-11 18:36:40 +01:00
Guillaume Le Vaillant f7afefba00
gnu: epiphany: Fix build with libportal-0.5.
* gnu/packages/patches/epiphany-update-libportal-usage.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gnome.scm (epiphany)[source]: Use it.
2022-01-11 16:09:06 +01:00
Daniel Meißner 0957f20cb7
gnu: eog: Fix build with libportal-0.5.
After the update to libportal-0.5 in 294476022f
eog fails with:

../eog-40.3/src/eog-util.c:48:10: fatal error: libportal/portal-gtk3.h: No such file or directory

This was already fixed upstream and this commits extracts the patch.

* gnu/packages/patches/eog-update-libportal-usage.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/gnome.scm(eog)[origin]: Add new patch.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2022-01-11 15:45:51 +01:00
Ricardo Wurmus 9966f98b1b
gnu: Add htslib-for-stringtie.
* gnu/packages/bioinformatics.scm (htslib-for-stringtie): New variable.
* gnu/packages/patches/htslib-for-stringtie.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2022-01-11 14:19:53 +01:00
Attila Lendvai a485e1e663
gnu: Add gpaste.
* gnu/packages/gnome-xyz.scm (gpaste): New variable.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2022-01-11 11:16:51 +01:00
Felix Gruber 80f616139c
gnu: dealii: Update to 9.3.2.
* gnu/packages/maths.scm (dealii): Update to 9.3.2.
  [source]: Add dealii-fix-compiliation-with-boost-1.78.patch and
  dealii-fix-sundials.patch.
  [inputs]: Use simplified format.
  [native-inputs]: Use simplified format.
* gnu/packages/patches/dealii-fix-compiliation-with-boost-1.78.patch:
  New file.
* gnu/packages/patches/dealii-fix-sundials.patch: New file.
* gnu/local.mk: Add new patch files.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2022-01-11 10:43:47 +01:00
Tobias Geerinckx-Rice 13f4c905b2
gnu: chez-scheme: Update to 9.5.6.
* gnu/packages/chez.scm (chez-scheme): Update to 9.5.6.
[source]: Remove patch.
[arguments]: Don't explicitly return #t from phases.
* gnu/packages/patches/chez-scheme-build-util-paths-backport.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2022-01-09 21:58:34 +01:00
Marius Bakke 4a943cfdbe
gnu: ungoogled-chromium: Update to 97.0.4692.71-1.
* gnu/packages/patches/ungoogled-chromium-system-ffmpeg.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/chromium.scm (%guix-patches): Add it.
(%chromium-version): Set to 97.0.4692.71-1.
(%ungoogled-origin, ungoogled-chromium): Update hashes.
2022-01-07 17:15:38 +01:00
Lars-Dominik Braun 927c589256
gnu: xpra: Install Cython-built libraries.
xpra would fail to start, because shared objects were
not installed. It’s not clear why it stopped working,
but it seems it was not the upgrade I reverted in commit
ab6d56d01d to fix #52869. Sorry for the
confusion :(

* gnu/packages/patches/xpra-4.2-install_libs.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/xorg.scm (xpra)[source]: Add new patch.
[arguments]: Ensure 'build phase runs and passes #:configure-flags
to setup.py.
2022-01-07 08:58:40 +01:00
Tobias Geerinckx-Rice b4263f12ed
gnu: tremc: Fix execution with recent Python.
* gnu/packages/bittorrent.scm (tremc)[source]: Add patch.
* gnu/packages/patches/tremc-fix-decodestring.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.

Reported by gnoo in #guix
2022-01-06 19:36:40 +01:00
John Kehayias b1cf1d44f4
gnu: Add openrgb.
* gnu/packages/hardware.scm (openrgb): New variable.
* gnu/packages/patches/openrgb-unbundle-hueplusplus.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.

Signed-off-by: Leo Famulari <leo@famulari.name>
2022-01-06 13:18:27 -05:00
John Kehayias fb8568857f
gnu: Add hueplusplus.
* gnu/packages/hardware.scm (hueplusplus): New variable.
* gnu/packages/patches/hueplusplus-mbedtls.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2022-01-06 13:18:19 -05:00
Taiju HIGASHI b0d25a7118
gnu: tootle: Fix build.
* gnu/packages/patches/tootle-glib-object-naming.patch,
gnu/packages/patches/tootle-reason-phrase.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/mastodon.scm (tootle)[source]: Use them.
[inputs]: Use LIBSOUP-MINIMAL-2 instead of LIBSOUP.

Co-authored-by: Ludovic Courtès <ludo@gnu.org>
2022-01-05 23:44:18 +01:00
Tobias Geerinckx-Rice 14564f5847
gnu: linuxdcpp: Reanimate.
* gnu/packages/direct-connect.scm (linuxdcpp)[source]: Add patch and
snippet to fix build.
* gnu/packages/patches/linuxdcpp-openssl-1.1.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2022-01-05 03:54:03 +01:00
Mathieu Othacehe 84207eea2c
gnu: Add python-pdoc3.
* gnu/packages/patches/python-pdoc3-tests.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/local.mk (python-pdoc3): New variable.
2022-01-04 12:45:29 +01:00
Felix Gruber a83dc5022b
gnu: widelands: Fix build against boost 1.77.
Widelands fails to build with boost 1.77 due to a missing include in one
of Wideland's header files that was previously indirectly included by
boost 1.76.

* gnu/packages/patches/widelands-add-missing-map-include.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/games.scm (widelands)[source]: Add patch.

Signed-off-by: Leo Famulari <leo@famulari.name>
2022-01-01 23:22:59 -05:00
Timmy Douglas bff99f6b63
gnu: Add crun.
* gnu/packages/containers.scm (crun): New variable.
* gnu/local.mk: add containers.scm

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-01-01 19:06:53 +01:00
Simon South aac3a33d1e
gnu: ragel: Fix build of knot on aarch64-linux.
Apply a patch backported from Ragel's "ragel-6" branch that allows it to
reliably generate usable code on aarch64-linux where the C/C++ "char" type is
unsigned by default, fixing the build of Knot on this platform.

* gnu/packages/patches/ragel-char-signedness.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/ragel.scm (ragel)[arguments]: Add custom phase for AArch64 that
applies the patch.
[native-inputs]: Add "patch" and patch file on AArch64.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2022-01-01 15:11:51 +01:00
Hartmut Goebel e057383848
gnu: Add libsequoia.
* gnu/packages/sequoia.scm (sequoia-package-origin): New variable.
  (libsequoia): New variable.
* gnu/packages/patches/sequoia-fix-ffi-Makefile.patch,
  gnu/packages/patches/sequoia-remove-store.patch New files.
* gnu/local.mk (dist_patch_DATA): Add them.
2021-12-30 21:32:44 +01:00
Blake Shaw 7022eb6ea0
gnu: Add notcurses.
* gnu/packages/notcurses.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.

Signed-off-by: Leo Famulari <leo@famulari.name>
2021-12-29 13:19:22 -05:00
Ricardo Wurmus 9e644d979d
gnu: tensorflow: Install C headers.
* gnu/packages/machine-learning.scm (tensorflow)[arguments]: Add build phase
'patch-cmake-file-to-install-c-headers; move setting of LDFLAGS from
'build-pip-package to 'unpack-third-party-sources; move 'build-pip-package
after 'install phase.
[source]: Add patch.
* gnu/packages/patches/tensorflow-c-api-fix.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2021-12-28 19:05:32 +01:00
Eric Bavier 2c451db39a
gnu: cool-retro-term: Fix build with gcc@10.
* gnu/packages/patches/cool-retro-term-wctype.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/terminals.scm (cool-retro-term)[source]: Add
'cool-retro-term-wctype.patch'.
2021-12-27 22:53:46 -06:00
Ricardo Wurmus e742437211
gnu: Add llvm-13.
* gnu/packages/llvm.scm (llvm-13, clang-runtime-13, clang-13,
clang-toolchain-13): New variables.
(llvm-12): Inherit from llvm-13.
* gnu/packages/patches/clang-13.0-libc-search-path.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2021-12-27 13:21:05 +01:00
Marius Bakke 52d945d382
gnu: fifengine: Fix build.
* gnu/packages/patches/fifengine-boost-compat.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/games.scm (fifengine)[source](patches): Add it.
[arguments]: Remove defunct Python module import.
2021-12-26 00:58:27 +01:00
Ricardo Wurmus 96ccb89bef
gnu: Remove icedtea-6.
* gnu/packages/java.scm (icedtea-6): Remove variable.
* gnu/packages/patches/icedtea-6-extend-hotspot-aarch64-support.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove patch.
2021-12-23 20:27:46 +01:00
Mathieu Othacehe 05a9d1f378
Remove VM generation dead-code.
This code duplicates the (gnu system image) and (gnu build image) code. Using
VM for image generation is not needed, not portable and really slow. Remove
all the VM image generation code to make sure that only the image API is used.

* gnu/build/vm.scm: Remove it. Move the qemu-command procedure to ...
* gnu/build/marionette.scm: ... here.
* gnu/local.mk (GNU_SYSTEM_MODULES): Adapt it.
* tests/modules.scm: Ditto.
* gnu/tests/install.scm: Ditto.
* gnu/system/vm.scm: Adapt it and remove expression->derivation-in-linux-vm,
qemu-img, system-qemu-image/shared-store and system-docker-image procedures.
* doc/guix.texi (G-Expressions): Adapt it.
2021-12-23 10:54:00 +01:00
Ricardo Wurmus 5894b1210d
gnu: opencv: Update to 4.5.4.
* gnu/packages/patches/opencv-fix-build-of-grfmt_jpeg2000.cpp.patch: Delete file.
* gnu/packages/patches/opencv-rgbd-aarch64-test-fix.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove patches.
* gnu/packages/image-processing.scm (opencv): Update to 4.5.4.
[source]: Remove patch; keep bundled quirc.
[arguments]: Build without ade; update build phase 'disable-broken-tests;
remove build phase 'add-ilmbase-include-path.
[native-inputs]: Update source hashes for opencv-contrib and opencv-extra.
[inputs]: Use new style; add imath and openblas; replace openexr-2 with
openexr.
[description]: Reformat first paragraph.
2021-12-20 23:23:40 +01:00
Josselin Poiret 360c10ba7e
gnu: xdg-desktop-portal-wlr: Add binary dependencies.
* gnu/packages/patches/xdg-desktop-portal-wlr-harcoded-length.patch:
Add it.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/freedesktop.scm (xdg-desktop-portal-wlr): Add
dependencies on bash-minimal, grim and slurp, and hardcode the paths
in source.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2021-12-19 13:17:30 +01:00
Tobias Geerinckx-Rice de01d08bdf
gnu: bear: Update to 3.0.17.
* gnu/packages/build-tools.scm (bear): Update to 3.0.17.
[source]: Remove patch, and…
[arguments]: …replace it with a new 'disable-TEST_BEFORE_INSTALL phase.
Don't explicitly return #t from other phases.
* gnu/packages/patches/bear-disable-preinstall-tests.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2021-12-19 00:36:29 +01:00
Remco van 't Veer 08b0f5c2a5
gnu: sssd: Fix build with glibc-2.33
* gnu/packages/patches/sssd-collision-with-external-nss-symbol.patch: Commit from sssd repo
* gnu/packages/sssd.scm: Add patch

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-12-18 22:51:54 +01:00
Olivier Dion 2068e3ccd9
gnu: Add Dyninst.
* gnu/packages/instrumentation.scm: New file
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-12-18 22:51:54 +01:00
Hartmut Goebel d4ecdc3328
gnu: trytond: Ensure all modules are found.
If the python package matching trytond is not installed alongside to trytond,
PYTHONPATH is not set (or pointing to a wrong version) and trytond (and the
trytond tools) would not find the trytond modules.

This change introduces a new native-search-path GUIX_TRYTOND_MODULES_PATH.
Trytond gets patched to honor this environment variable.

Thanks to Maxim Cournoyer, whose code for guix-pythonpath-search-path
was the template for guix-trytonpath-search-path.

* gnu/packages/patches/trytond-add-guix_trytond_path.patch: New file.
* gnu/local.mk: (dist_patch_DATA): Add it.
* gnu/packages/tryton.scm (trytond): Use it.
  [native-search-paths]: New element.
  (guix-trytonpath-search-path): New function.
2021-12-18 15:13:57 +01:00
Hartmut Goebel 939e3813d0
gnu: trytond: Fix import of trytond modules.
For adding modules, trytond uses entry-points, anyhow relying on the
modules being named "trytond.modules.xxx" and being placed in the same
filesystem path as "trytond.modules".

The package "trytond.modules" is not a namespace module, anyhow trytond
modules must be sub-modules of "trytond.modules". This works well if all
packages are installed into the same filesystem path "…/trytond/modules":
The Python importer will find all sub_modules at this place.

Anyhow, in Guix, modules don't share the same filesystem path and the
Python importer will not find them.

Solution is to add all trytond module's locations to
"trytond.modules._path__". This will make "trytond.module" behave much
like a namespace module and the importer pick up the module.

* gnu/packages/patches/trytond-add-egg-modules-to-path.patch: New file.
* gnu/packages/tryton.scm (trytond): Use it.
* gnu/local.mk (dist_patch_DATA): Add it
2021-12-18 15:13:56 +01:00
Josselin Poiret via Guix-patches via f98edfa816
gnu: build: Register missing patches.
* gnu/local.mk (dist_patch_DATA): Add gcc-cross-gxx-include-dir.patch,
gcc-10-cross-environment-variables.patch,
gnome-session-support-elogind.patch,
icedtea-7-hotspot-aarch64-use-c++98.patch,
libvirt-create-machine-cgroup.patch, openjdk-14-builtins.patch,
python-babel-fix-parse-future-test.patch,
rust-wl-clipboard-rs-newer-wl.patch, streamlink-update-test.patch.

Signed-off-by: Tobias Geerinckx-Rice <me@tobias.gr>
2021-12-18 00:45:38 +01:00
Marius Bakke e0559c5314
gnu: grfcodec: Fix build with GCC 10.
* gnu/packages/patches/grfcodec-gcc-compat.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/game-development.scm (grfcodec)[source](patches): New field.
[arguments]: Remove trailing #t.
2021-12-17 19:07:17 +01:00
Maxim Cournoyer a7c5df90a9
gnu: xf86-video-qxl: Fix build.
* gnu/packages/patches/xf86-video-qxl-fix-build.patch: Add patch.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/xorg.scm (xf86-video-qxl): Apply it.
2021-12-16 23:49:50 -05:00
Liliana Marie Prikler 47843a14a4
gnu: telepathy-glib: Update to 0.24.2.
* gnu/packages/glib.scm (telepathy-glib): Update to 0.24.2.
[source]: Drop upstreamed patches.
* gnu/packages/patches/telepathy-glib-channel-memory-leak.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
2021-12-17 04:43:08 +01:00
Tobias Geerinckx-Rice df8a93044c
gnu: Remove unreferenced nss/fixed.
* gnu/packages/nss.scm (nss/fixed): Remove variable.
* gnu/packages/patches/nss-CVE-2021-43527.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2021-12-17 03:07:52 +01:00
Marius Bakke 1f4319886a
gnu: python-magic: Work around crash on .crx files.
* gnu/packages/patches/python-magic-python-bytecode.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/python-xyz.scm (python-magic)[source](patches): Add it.
[inputs]: Add FILE-NEXT.
[arguments]: While at it, remove input labels.
* gnu/packages/diffoscope.scm (diffoscope)[native-inputs]: Add FILE-NEXT.
2021-12-16 22:21:13 +01:00
Marius Bakke 745d6cb7d3
gnu: ungoogled-chromium: Unexpire accelerated video decoding.
* gnu/packages/patches/ungoogled-chromium-accelerated-video-decode.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/chromium.scm (%guix-patches): Add it.
2021-12-16 22:21:12 +01:00
Marius Bakke 48a1bb314d
gnu: ungoogled-chromium: Enable RUNPATH validation.
* gnu/packages/patches/ungoogled-chromium-RUNPATH.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/chromium.scm (%guix-patches): Add it.
(ungoogled-chromium)[arguments]: Remove #:validate-runpath?.
2021-12-16 22:21:12 +01:00
Tobias Geerinckx-Rice 88b4dcdabe
gnu: php: Properly fix openssl_x509_checkpurpose_basic.phpt.
* gnu/packages/php.scm (php)[source]: Add patch.
* gnu/packages/patches/php-openssl_x509_checkpurpose_basic.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.

Thanks to Diego Nicola Barbato <dnbarbato@posteo.de>
2021-12-16 19:06:50 +01:00
Lars-Dominik Braun 44e1300994
gnu: Add js-mathjax-3.
* gnu/packages/javascript.scm (js-mathjax-3): New variable.
* gnu/packages/patches/mathjax-disable-webpack.patch,
gnu/packages/patches/mathjax-no-a11y.patch: New patches.
* gnu/local.mk (dist_patch_DATA): Register them.
2021-12-16 08:58:07 +01:00
Tobias Geerinckx-Rice 7166417ea6
gnu: spice-vdagent: Fix build with glib >= 2.68.
* gnu/packages/spice.scm (spice-vdagent)[source]: Add patch.
* gnu/packages/patches/spice-vdagent-glib-2.68.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2021-12-15 03:04:54 +01:00
Tobias Geerinckx-Rice a0fd9a3532
gnu: i7z: Fix building with GCC >= 10.
* gnu/packages/hardware.scm (i7z)[source]: Add patch.
* gnu/packages/patches/i7z-gcc-10.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2021-12-14 19:35:23 +01:00
Marius Bakke 99e0c4bc74
gnu: python-versioneer: Add support for Guix build directories.
* gnu/packages/patches/python-versioneer-guix-support.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/python-xyz.scm (python-versioneer)[source](patches): New field.
2021-12-13 23:28:58 +01:00
Ludovic Courtès 1052ae5f03
Merge branch 'master' into core-updates-frozen 2021-12-13 11:49:15 +01:00
Ludovic Courtès 867dcbe3a1
gnu: python-pyflakes@2.2: Adjust tests for Python 3.9.
* gnu/packages/patches/python-pyflakes-test-location.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/python-xyz.scm (python-pyflakes-2.2): Use it.
2021-12-12 22:16:33 +01:00
Foo Chuan Wei d1072f21ba
gnu: sbcl-aserve: Add HTML5 elements to htmlgen.
* gnu/patches/sbcl-aserve-add-HTML-5-elements.patch: New file.
* gnu/patches/sbcl-aserve-fix-rfe12668.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/lisp-xyz.scm (sbcl-aserve)[source]: Use them.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2021-12-12 10:24:52 +01:00
Petr Hodina 610645b175
gnu: i3status-rust: Add missing inputs.
* gnu/packages/rust-apps (i3status-rust)[inputs]: Add alsa-utils,
  bash-minmal, coreutils, ibus, iproute, kdeconnect, lm-sensors, setxkbmap,
  speedtest-cli, xdg-utils, xrandr.
  [arguments]: Add phase to wrap-program bin/i3status-rs.
* gnu/local.mk: Add patch (change not applied in
  575fcd3045)

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-12-11 15:35:44 +01:00
Mathieu Othacehe 32750e8c3e
Merge remote-tracking branch 'signed/master' into core-updates 2021-12-10 21:49:25 +01:00
Philip McGrath 7c2d84df1c
gnu: sendgmail: Don't limit domain name of sender.
There are three open pull requests adding this functionality:

  - https://github.com/google/gmail-oauth2-tools/pull/17 (October 2019)
  - https://github.com/google/gmail-oauth2-tools/pull/26 (May 2020)
  - https://github.com/google/gmail-oauth2-tools/pull/37 (May 2021)
    (The patch here is identical to #26, so I just closed this one.)

Meanwhile, the most recent commit to the upstream repository was in
May 2019: that was the commit that first added `sendgmail`.

This commit adjusts Guix's `sendgmail`, following Postel's advice,
to make the command "liberal in its receiving behavior" (RFC 760):
it always accepts email addresses with any domain name, as in #26,
and it accepts (and ignores) the `-gsuite` flag used in #17.

* gnu/packages/patches/sendgmail-remove-domain-restriction.patch:
New file. This is the patch from #26.
* gnu/packages/patches/sendgmail-accept-ignored-gsuite-flag.patch:
New file, based on #17.
* gnu/local.mk (dist_patch_DATA): Add the new patches.
* gnu/packages/mail.scm (sendgmail)[source]: Apply the new patches.
Increment the "revision" argument to `git-version` from 0 to 1.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-12-10 15:32:45 +01:00
Efraim Flashner a66642f744
gnu: cdrkit-libre: Fix cross-compiling.
* gnu/packages/cdrom.scm (cdrkit-libre)[source]: Add patch.
* gnu/packages/patches/cdrkit-libre-cross-compile.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2021-12-10 12:57:35 +02:00
Ricardo Wurmus 0bf3c9abaa
gnu: metabat: Update to 2.15.
* gnu/packages/bioinformatics.scm (metabat): Update to 2.15.
[source]: Remove patch.
[build-system]: Use cmake-build-system.
[arguments]: Adjust to new build system.
* gnu/packages/patches/metabat-fix-compilation.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2021-12-09 11:50:10 +01:00
Tobias Geerinckx-Rice 4ca0e9d5f7
gnu: bind: Update to 9.16.23 [fixes CVE-2021-25218, CVE-2021-25219].
* gnu/packages/dns.scm (isc-bind): Update to 9.16.23.
[source]: Add patch.
* gnu/packages/patches/bind-re-add-attr-constructor-priority.patch:
New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2021-12-09 01:24:37 +01:00
Ludovic Courtès 3b8825421b
gnu: geeqie: Fix X11 error at startup.
Fixes <https://issues.guix.gnu.org/52089>.
Reported by Maxim Cournoyer <maxim.cournoyer@gmail.com>.
Patch provided by John Kehayias <john.kehayias@protonmail.com>.

* gnu/packages/patches/geeqie-clutter.patch: New file.
* gnu/packages/image-viewers.scm (geeqie)[sources]: Use it.
* gnu/local.mk (dist_patch_DATA): Add it.
2021-12-08 22:35:03 +01:00
Mark H Weaver 906dd9ff63
gnu: icecat: Update to 91.4.0-guix0-preview1 [security fixes].
Includes fixes for CVE-2021-43536, CVE-2021-43537, CVE-2021-43538,
CVE-2021-43539, CVE-2021-43541, CVE-2021-43542, CVE-2021-43543,
CVE-2021-43545, CVE-2021-43546, and MOZ-2021-0009.

* gnu/packages/gnuzilla.scm (%icecat-version, %icecat-build-id): Update.
(icecat-source): Remove icecat-CVE-2021-43527.patch, which is now included
in upstream icecat.  Update the gnuzilla commit, base version, and hashes.
* gnu/packages/patches/icecat-CVE-2021-43527.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2021-12-07 19:09:24 -05:00
Pierre Langlois 4afacd4546
gnu: helm: Fix build with GCC 9 and later.
* gnu/packages/music.scm (helm)[origin]: Add patch.
* gnu/packages/patches/helm-fix-gcc-9-build.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2021-12-06 20:41:18 +00:00
Efraim Flashner b6a726222a
gnu: go-github-com-golang-snappy: Adjust test-suite on 32-bit systems.
* gnu/packages/syncthing.scm (go-github-com-golang-snappy)[source]: Add
patch to skip a test on 32-bit systems.
* gnu/packages/patches/go-github-com-golang-snappy-32bit-test.patch: New
file.
* gnu/local.mk (dist_patch_DATA): Register it.
2021-12-06 14:04:30 +02:00
Ricardo Wurmus 9bc0f45df5
Merge remote-tracking branch 'origin/master' into core-updates-frozen 2021-12-05 19:17:41 +01:00
zimoun 9112bed608
gnu: libunwind-julia: Fix build on i686-linux.
* gnu/packages/julia.scm (libunwind)[origin]<patches>: Add patch.
* gnu/packages/patches/libunwind-julia-fix-GCC10-fno-common.patch: New file.
* gnu/local/mk (dist_patch_DATA): Register it.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-12-04 19:33:30 +02:00
Mark H Weaver 3e9dc2754e
gnu: icecat: Remove vestigial icecat-78-makeicecat.patch.
This is a followup to commit a63231003e.

* gnu/packages/patches/icecat-78-makeicecat.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2021-12-03 04:45:15 -05:00
Mark H Weaver d49e7a592f
gnu: icecat: Fix CVE-2021-43527.
* gnu/packages/patches/icecat-CVE-2021-43527.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gnuzilla.scm (icecat-source): Apply it.
2021-12-03 04:37:42 -05:00
Mark H Weaver 080a5de2ee
gnu: nss: Fix CVE-2021-43527 via graft.
* gnu/packages/patches/nss-CVE-2021-43527.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/nss.scm (nss/fixed): New variable
(nss)[replacement]: New field.
2021-12-03 04:37:21 -05:00
Ludovic Courtès 725d35aa9a
gnu: scalapack: Update to 2.1.0.
* gnu/packages/maths.scm (scalapack): Update to 2.1.0.
[source]: Remove "scalapack-blacs-mpi-deprecations.patch" and add
"scalapack-gcc-10-compilation.patch".
[arguments]: Add 'skip-faulty-test' phase.
* gnu/packages/patches/scalapack-blacs-mpi-deprecations.patch: Remove.
* gnu/packages/patches/scalapack-gcc-10-compilation.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
2021-12-01 23:30:15 +01:00
Attila Lendvai c7c4f80881
gnu: Update Trezor support.
* gnu/packages/patches/python-trezor-agent-fix-argv0.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Apply previous removal.
* gnu/packages/finance.scm (python-trezor-agent): Update to 0.14.4.
[source]: Remove now useless patch.
(python-mnemonic): Update to 0.20.
(python-trezor): Update to 0.12.4
(trezor-agent): Update to 0.11.0-1.
[source]: Add file-name field.
[arguments]: Remove trailing #T in phases.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-12-01 18:05:26 +01:00
Giacomo Leidi ce6ea46d40
gnu: Add dynaconf.
* gnu/packages/python-xyz.scm (dynaconf): New variable.
* gnu/packages/patches/dynaconf-Unvendor-dependencies.patch: New file.
* local.mk (dist_patch_DATA): Register it.

Signed-off-by: Efraim Flashner <efraim@flashner.co.il>
2021-12-01 13:58:07 +02:00
Mathieu Othacehe 854120d01f
gnu: Remove duplicated patch.
* gnu/local.mk (dist_patch_DATA): Remove duplicated line.
2021-12-01 09:23:51 +01:00
Mathieu Othacehe 6805ab3290
gnu: freecad: Fix build.
* gnu/packages/patches/freecad-boost-serialization.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/engineering.scm (freecad) [source]: Use it.
[arguments]{#:configure-flags}: Turn it into a GEXP and adapt it.
2021-11-30 21:27:13 +01:00
Mathieu Othacehe a5cdd82ecd
gnu: freecad: Switch to vtk-9.
Switch to vtk-9 with the relevant patch to be able to get rid of vtk-8.

* gnu/packages/patches/freecad-vtk9.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/engineering.scm (freecad)[source]: Use it.
2021-11-30 21:27:13 +01:00
Julien Lepiller d95a982cdd
gnu: coq: Update to 8.14.0.
* gnu/packages/coq.scm (coq): Update to 8.14.0.
(coq-bignums): Update to 8.14.0.
(coq-equations): Update to 1.3.
* gnu/packages/patches/coq-fix-envvars.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2021-11-30 03:52:00 +01:00
Mathieu Othacehe f22dfba530
gnu: agg: Fix build.
* gnu/packages/patches/agg-2.5-gcc8.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/graphics.scm (agg)[source]: Use it.
2021-11-29 14:58:39 +01:00
Attila Lendvai 25cb5bad5e
gnu: python-trezor-agent: Fix key generation with trezor-gpg init
* gnu/packages/finance.scm (trezor-agent): Add comment on why the
undoing of the wrapping is done, and also delete the irrelevant sideffect of
the now undone wrapping.
(python-trezor-agent): Add a patch that changes the python code to handle the
argv[0] changed by the wrapping.
* gnu/packages/patches/trezor-agent-fix-argv0.patch: New file.
* gnu/local.mk (dist_patch_DATA): Reference patch.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-11-28 21:31:08 +01:00
Pierre Langlois bf1e46e959
gnu: u-boot: Fix rk3399 boot from emmc.
* gnu/packages/bootloaders.scm (%u-boot-rk3399-enable-emmc-phy-patch): New
variable.
(u-boot)[origin]: Register it.
* gnu/packages/patches/u-boot-rk3399-enable-emmc-phy.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2021-11-27 15:03:33 +00:00
Mathieu Othacehe 3466c055e6
gnu: gnome-boxes: Add Guix logo support.
* gnu/packages/patches/gnome-boxes-add-guix-logo.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gnome.scm (gnome-boxes): Use it.
2021-11-27 13:43:54 +01:00
Ludovic Courtès c335c06115
gnu: tor: Address glibc 2.33 compatibility issue on i686.
* gnu/packages/patches/tor-sandbox-i686.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/tor.scm (tor): Use it.
2021-11-26 22:49:21 +01:00
Leo Famulari ef717037c8
gnu: pitivi: Fix build with Meson 0.60.
* gnu/packages/patches/pitivi-fix-build-with-meson-0.60.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/video.scm (pitivi)[source]: Use it.
2021-11-26 13:36:58 -05:00
zimoun 6312c68f70
gnu: julia: Allow parallel tests.
* gnu/packages/julia.scm (julia)[origin]<patches>: New patch.
* gnu/packages/patches/julia-allow-parallel-build.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2021-11-25 01:04:17 -05:00
jgart 6de284e832
gnu: racket: Update to 8.3.
* gnu/packages/racket.scm (racket-minimal, racket): Update to 8.3.
* gnu/packages/racket.scm (racket-minimal)[source]: Remove
racket-minimal-backport-1629887.patch from patches.
* gnu/packages/patches/racket-minimal-backport-1629887.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Unregister it.

Signed-off-by: Arun Isaac <arunisaac@systemreboot.net>
2021-11-24 23:59:37 +05:30
Ludovic Courtès 3e810b846a
gnu: glib-networking: Work around test failure on 32-bit platforms.
On 32-bit platforms with a 32-bit 'time_t', we'd get this test failure:

  GLib-Net:ERROR:../glib-networking-2.70.rc/tls/tests/certificate.c:689:test_certificate_not_valid_after: assertion failed (actual_str == EXPECTED_NOT_VALID_AFTER): ("2037-12-31T23:23:23Z" == "2046-07-25T18:13:10Z")

This commit includes the workaround implemented upstream.

* gnu/packages/patches/glib-networking-32-bit-time.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gnome.scm (glib-networking)[arguments]: New field.
2021-11-24 18:44:26 +01:00
Josselin Poiret c3fd310d8f
gnu: gdm: Pass GDK_PIXBUF_MODULE_FILE to sessions.
* gnu/packages/patches/gdm-pass-gdk-pixbuf-loader-env.patch: Add patch.
* gnu/local.mk (dist_patch_DATA): List it.
* gnu/packages/gnome.scm (gdm): Use it.
* gnu/services/xorg.scm (gdm-shepherd-service): Pass GDK_PIXBUF_MODULE_FILE.

Modified-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2021-11-24 01:02:37 -05:00
Ludovic Courtès c0e7242aa1
gnu: libgit2: Reintroduce 1.1.0.
* gnu/packages/version-control.scm (libgit2-1.1): New variable.
* gnu/packages/patches/libgit2-mtime-0.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2021-11-23 20:35:00 +01:00
Ludovic Courtès b15e543d30
Merge branch 'master' into core-updates-frozen 2021-11-23 11:29:38 +01:00
Maxim Cournoyer f42bc60454
gnu: guile-git: Patch to support latest libgit2.
* gnu/packages/patches/guile-git-adjust-for-libgit2-1.2.0.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/guile.scm (guile-git)[source]: Use it.
2021-11-22 23:56:05 -05:00
Maxim Cournoyer e0e2316420
gnu: libgit2: Update to 1.3.0.
* gnu/packages/patches/libgit2-mtime-0.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): De-register it.
* gnu/packages/version-control.scm (libgit2): Update to 1.3.0.
[source]: Remove patch and simplify snippet.
[phases]: Remove trailing #t.
2021-11-22 23:56:04 -05:00
Ricardo Wurmus eceecd8ab4
gnu: transmission-remote-gtk: Update to 1.4.2.
* gnu/packages/bittorrent.scm (transmission-remote-gtk): Update to 1.4.2.
[source]: Remove patch.
* gnu/packages/patches/transmission-remote-gtk-fix-appstream.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2021-11-22 22:55:39 +01:00
Jorge Gomez 10fad03fcf
gnu: Move visidata to (gnu packages spreadsheet).
See <http://issues.guix.gnu.org/47852>.

* gnu/packages/visidata.scm (visidata): Move from here…
* gnu/packages/spreadsheet.scm (visidata): …to here.
* gnu/local.mk (GNU_SYSTEM_MODULES): Adjust accordingly.

Signed-off-by: Leo Famulari <leo@famulari.name>
2021-11-22 16:16:28 -05:00
Jorge Gomez c4bc557c3a
gnu: Add sc-im.
* gnu/packages/spreadsheet.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add it.

Signed-off-by: Leo Famulari <leo@famulari.name>
2021-11-22 16:16:25 -05:00
Mathieu Othacehe e711ad3185
gnu: awesome: Fix build.
* gnu/packages/patches/awesome-4.3-fno-common.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/wm.scm (awesome)[source]: Use it.
[arguments]{set-paths}: Set HOME and XDG_CACHE_HOME variables.
2021-11-22 15:35:47 +00:00
Ludovic Courtès f862d7fb8d
gnu: network-manager: Build with Meson 0.60.
This is another way to address
<https://github.com/mesonbuild/meson/issues/9492> as suggested by
Nirbheek Chauhan and Paolo Bonzini.

* gnu/packages/patches/network-manager-meson.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gnome.scm (network-manager)[source]: Use it.
[arguments]: Remove #:meson.
2021-11-21 23:01:15 +01:00
Ludovic Courtès 248199863c
gnu: python-werkzeug: Reintroduce 1.0.1.
* gnu/packages/python-web.scm (python-werkzeug-1.0): New variable.
* gnu/packages/patches/python-werkzeug-tests.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2021-11-21 23:01:15 +01:00
Jan (janneke) Nieuwenhuizen b1fd953114
gnu: gdb: Build fix for the Hurd.
This allows (cross-)building gdb-minimal for the Hurd.

* gnu/packages/patches/gdb-fix-gnu-nat-build.patch: New file, taken from
upstream.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/web.scm (gdb)[inputs]: When building for the Hurd, add it.
[arguments]: When building for the Hurd, apply it.
2021-11-21 22:27:14 +01:00
Julien Lepiller b0e76b0828
gnu: ocaml-qcheck: Update to 0.18.
* gnu/packages/ocaml.scm (ocaml-qcheck): Update to 0.18.
* gnu/packages/patches/ocaml-qcheck-fix-test-whitespace.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2021-11-20 17:08:06 +01:00
Julien Lepiller 0df82727a6
gnu: ocaml-ppx-variants-conv: Update to 0.14.2.
* gnu/packages/ocaml.scm (ocaml-ppx-variants-conv): Update to 0.14.2.
[origin]: Remove patch.
* gnu/packages/patches/ocaml-ppx-variants-ppxlib-api-change.patch:
Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2021-11-20 17:07:50 +01:00
Maxim Cournoyer afacad8b67
gnu: gnome-shell: Update to 41.0.
* gnu/packages/gnome.scm (gnome-shell): Update to 41.0.
[origin]: Remove patches and modules fields.
[phases]{pre-check}: Set HOME.
* gnu/packages/patches/gnome-shell-disable-test.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): De-register it.
2021-11-20 08:57:01 -05:00
Josselin Poiret 2db788fe74
gnu: elogind: Revert changes to polkit build time detection.
* gnu/packages/patches/elogind-revert-polkit-detection.patch: New file.
* gnu/packages/freedesktop.scm (elogind): Use it.
* gnu/local.mk (dist_patch_DATA): Add it.

Signed-off-by: Timothy Sample <samplet@ngyro.com>
2021-11-19 17:19:34 -05:00
Vivien Kraus d9e3c1b0b3
gnu: geary: Upgrade to 40.0
* gnu/packages/gnome.scm (geary): Upgrade to 40.0.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-11-19 14:26:15 +01:00
Timothy Sample abc9a9b745
gnu: polkit: Fix elogind configuration.
* gnu/packages/patches/polkit-configure-elogind.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/polkit.scm (polkit): Use it.
2021-11-19 00:55:21 -05:00
Jacob Hrbek 92d6f17dfd
gnu: Add shell2batch.
* gnu/packages/crates-io.scm (shell2batch): New variable.
* gnu/packages/patches/rust-shell2batch-lint-fix.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.

Signed-off-by: Julien Lepiller <julien@lepiller.eu>
2021-11-18 23:35:37 +01:00
Josselin Poiret 674dbeb436
gnu: xf86-video-nouveau: Use upstream patch for xorg-server 21.1.
* gnu/packages/patches/xf86-video-nouveau-fixup-ABI.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/xorg.scm (xf86-video-nouveau): Use it.

Signed-off-by: Timothy Sample <samplet@ngyro.com>
2021-11-18 10:47:05 -05:00
Josselin Poiret 5726411038
gnu: xf86-video-mach64: Patch to build with xorg-server 21.1.
* gnu/packages/patches/xf86-video-mach64-bool-to-boolean.patch: New
patch.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/xorg.scm (xf86-video-mach64): Use it.

Signed-off-by: Timothy Sample <samplet@ngyro.com>
2021-11-18 10:46:56 -05:00
Simon South b0eaa4f2d7
gnu: strace: Allow readlink, readlinkat tests to pass.
Modify the invocation of strace's "readlink" and "readlinkat" tests to prevent
them from failing due to an additional system call made by Guix's patched
version of glibc.

* gnu/packages/linux.scm (strace)[source]: Add patch.
[arguments]<#:phases>: Do not disable the "readlink" test now that it can
succeed.
* gnu/packages/patches/strace-readlink-tests.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-11-18 14:11:43 +01:00
Jack Hill 9322b4d30d
gnu: gnome-screenshot: Fix build with Meson 0.60.0.
* gnu/packages/patches/gnome-screenshot-meson-0.60.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gnome.scm (gnome-screenshot)[patches]: New field.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-11-18 09:53:16 +01:00
Ludovic Courtès 3a317f7476
Merge branch 'master' into core-updates-frozen 2021-11-17 23:43:14 +01:00
Greg Hogan 14f540593b
gnu: aws-checksums: Replace patch.
* gnu/packages/c.scm (aws-checksums): Replace patch.
[arguments]: Fix CMAKE_PREFIX_PATH.
[source]: Remove patch.
* gnu/packages/patches/aws-checksums-cmake-prefix.patch:
Delete file.
* gnu/local.mk: Remove it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-11-16 16:59:52 +01:00
Greg Hogan 963ebbc62c
gnu: aws-c-event-stream: Replace patch.
* gnu/packages/c.scm (aws-c-event-stream): Replace patch.
[arguments]: Fix CMAKE_PREFIX_PATH.
[source]: Remove patch.
* gnu/packages/patches/aws-c-event-stream-cmake-prefix.patch:
Delete file.
* gnu/local.mk: Remove it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-11-16 16:59:52 +01:00
Greg Hogan c769b8c2b5
gnu: aws-sdk-cpp: Update to 1.9.136.
* gnu/packages/cpp.scm (aws-sdk-cpp): Update to 1.9.136.
[arguments]: Fix CMAKE_PREFIX_PATH.
[source]: Remove patches.
* gnu/packages/patches/aws-sdk-cpp-cmake-prefix.patch,
gnu/packages/patches/aws-sdk-cpp-disable-network-tests.patch,
gnu/packages/patches/aws-sdk-cpp-disable-werror.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Remove them.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-11-16 16:59:51 +01:00
Greg Hogan 37db6db284
gnu: aws-crt-cpp: Update to 0.17.1.
* gnu/packages/c.scm (aws-crt-cpp): Update to 0.17.1.
[arguments]: Fix CMAKE_PREFIX_PATH, disable network tests.
[source]: Remove patches.
* gnu/packages/patches/aws-crt-cpp-cmake-prefix.patch,
gnu/packages/patches/aws-crt-cpp-disable-networking-tests.patch:
Delete files.
* gnu/local.mk: Remove them.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-11-16 16:59:51 +01:00
Greg Hogan d5c9f52a37
gnu: aws-c-mqtt: Replace patch.
* gnu/packages/c.scm (aws-c-mqtt): Replace patch.
[arguments]: Fix CMAKE_PREFIX_PATH.
[source]: Remove patch.
* gnu/packages/patches/aws-c-mqtt-cmake-prefix.patch: Delete file.
* gnu/local.mk: Remove it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-11-16 16:59:51 +01:00
Greg Hogan 2d61354788
gnu: aws-c-s3: Update to 0.1.26.
* gnu/packages/c.scm (aws-c-s3): Update to 0.1.26.
[arguments]: Fix CMAKE_PREFIX_PATH, disable network tests.
[source]: Remove patches.
* gnu/packages/patches/aws-c-s3-cmake-prefix.patch,
gnu/packages/patches/aws-c-s3-disable-networking-tests.patch:
Delete files.
* gnu/local.mk: Remove them.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-11-16 16:59:51 +01:00
Greg Hogan 05be89ac5b
gnu: aws-c-auth: Update to 0.6.4.
* gnu/packages/c.scm (aws-c-auth): Update to 0.6.4.
[arguments]: Fix CMAKE_PREFIX_PATH, disable network tests.
[source]: Add and remove patches.
* gnu/packages/patches/aws-c-auth-install-private-headers.patch:
New file.
* gnu/packages/patches/aws-c-auth-cmake-prefix.patch,
gnu/packages/patches/aws-c-auth-disable-networking-tests.patch:
Delete files.
* gnu/local.mk: Add and remove them.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-11-16 16:59:51 +01:00
Greg Hogan cff8a12a0a
gnu: aws-c-compression: Update to 0.2.14.
* gnu/packages/c.scm (aws-c-compression): Update to 0.2.14.
[arguments]: Fix CMAKE_PREFIX_PATH.
[source]: Remove patch.
* gnu/packages/patches/aws-c-compression-cmake-prefix.patch:
Delete file.
* gnu/local.mk: Remove it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-11-16 16:59:51 +01:00
Greg Hogan 1a0ed46097
gnu: aws-c-http: Update to 0.6.7.
* gnu/packages/c.scm (aws-c-http): Update to 0.6.7.
[arguments]: Fix CMAKE_PREFIX_PATH, disable network tests.
[source]: Remove patches.
* gnu/packages/patches/aws-c-http-cmake-prefix.patch,
gnu/packages/patches/aws-c-http-disable-networking-tests.patch:
Delete files.
* gnu/local.mk: Remove them.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-11-16 16:59:50 +01:00
Greg Hogan 4ff5cd6b06
gnu: aws-c-cal: Update to 0.5.12.
* gnu/packages/c.scm (aws-c-cal): Update to 0.5.12.
[arguments]: Fix CMAKE_PREFIX_PATH.
[source]: Remove patch.
* gnu/packages/patches/aws-c-cal-cmake-prefix.patch: Delete file.
* gnu/local.mk: Remove it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-11-16 16:59:50 +01:00
Greg Hogan 2a32dedfbf
gnu: aws-c-io: Update to 0.10.9.
* gnu/packages/c.scm (aws-c-io): Update to 0.10.9.
[arguments]: Fix CMAKE_PREFIX_PATH, disable network tests.
[source]: Remove patches.
* gnu/packages/patches/aws-c-io-cmake-prefix.patch,
gnu/packages/patches/aws-c-io-disable-networking-tests.patch:
Delete files.
* gnu/local.mk: Remove them.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-11-16 16:59:50 +01:00
phodina ce9b9e7cba
gnu: Add rust-adblock-0.4.
* gnu/packages/crates-io.scm (rust-adblock-0.4): New variable.
* gnu/packages/patches/rust-adblock-ignore-live-tests.patch: New file.
* gnu/local.mk: Add patch.

Signed-off-by: Nicolas Goaziou <mail@nicolasgoaziou.fr>
2021-11-15 11:39:17 +01:00
Vagrant Cascadian 6cdf4e5bf2
gnu: gd: Fix long patch filename.
This fixes the generation of a tarball with "make dist":

  tar: guix-1.3.0.10365-4c4f9/gnu/packages/patches/gd-Revert-fix-303-gdlib.pc-use-Requires-instead-of-Libs.patch:
  file name is too long (max 99); not dumped

* gnu/packages/patches/gd-Revert-fix-303-gdlib.pc-use-Requires-instead-of-Libs.patch:
  Rename patch to ...
* gnu/packages/patches/gd-Revert-fix-303-gdlib.pc.patch: ... this.
* gnu/packages/gd.scm (gd)[source]: Update patch filename.
* gnu/local.mk (dist_patch_DATA): Update patch filename.
2021-11-14 16:36:58 -08:00
Maxim Cournoyer acd827be09
gnu: evolution: Update to 3.42.1.
* gnu/packages/gnome.scm (evolution): Update to 3.42.1.  Remove trailing #t.
[source]: Remove patches.
[phases]{adjust-webkitgtk-version}: New phase.
* gnu/packages/patches/evolution-CVE-2020-11879.patch: Delete file.
* gnu/packages/patches/evolution-printableoptions.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): De-register them.
2021-11-12 22:44:56 -05:00
Maxim Cournoyer ce7d93ceda
gnu: evolution-data-server: Update to 3.42.1.
* gnu/packages/gnome.scm (evolution-data-server): Update to 3.42.1.
Delete trailing #t.
[origin]: Remove patches.
[phases]{adjust-webkitgtk-version}: New phase.
* gnu/packages/patches/evolution-data-server-CVE-2020-14928.patch: Likewise.
* gnu/packages/patches/evolution-data-server-CVE-2020-16117.patch: Likewise.
* gnu/packages/patches/evolution-data-server-libical-compat.patch: Likewise.
* gnu/packages/patches/evolution-data-server-locales.patch: Likewise.
* gnu/packages/patches/evolution-data-server-printableoptions.patch: Likewise.
* gnu/local.mk (dist_patch_DATA): De-register them.
2021-11-12 22:29:53 -05:00
Ryan Sundberg 39754503e8
gnu: genimage: Update to 14.
Update genimage from version 11 to 14. A patch is required for the
tests due to differences in ext tooling.

* gnu/local.mk (dist_patch_DATA): Replace patch reference.
* gnu/packages/genimage.scm: Update package source.
* gnu/packages/patches/genimage-mke2fs-test.patch: New patch file.
* gnu/packages/patches/genimage-signedness.patch: Delete obsolete patch.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2021-11-12 12:02:32 +00:00
Maxim Cournoyer f19ea27ad0
gnu: Add polkit-duktape.
* gnu/packages/polkit.scm (polkit): Disable a JavaScript related test, somehow
triggered in the polkit-duktape build.
(polkit-duktape): New variable.
* gnu/packages/patches/polkit-use-duktape.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2021-11-11 12:18:28 -05:00
Maxim Cournoyer 5f818705b4
gnu: Add cling.
* gnu/packages/cpp.scm (cling): New variable.
(llvm-cling): New private variable.
(clang-cling): Likewise.
* gnu/packages/patches/cling-use-shared-library.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Register it.
2021-11-11 12:18:25 -05:00
Maxim Cournoyer 5a1ddd146b
gnu: ldc: Update to 1.27.1.
* gnu/packages/dlang.scm (ldc-bootstrap): Rename to...
(ldc-bootstrap-0.17): ... this.  Fix indentation.  Disable tests.
[phases]: Remove test related patching.
{patch-phobos}: Rename to ...
{patch-paths}: ... this.
[inputs]: Remove llvm-6, which is propagated by clang-6.
(ldc-bootstrap-1.12): New variable, based on the previous ldc.
[source]: Use the official release tarball.
[build-type]: Set the build type to Release.
[configure-flags]: Pass the -GNinja configure flag.
[phases]{patch-paths}: Override to adjust for changed paths.
{build, install}: Override to use ninja.
[native-inputs]: Add ld-gold-wrapper.  Update llvm to version 11 and use
ldc-bootstrap-0.17 as the bootstrapping D compiler.  Add ninja.  Remove the
phobos-src, druntime-src and dmd-testsuite-src source inputs, now included in
the official release.
(ldc-bootstrap-1.24): Other intermediate variant for bootstrapping purposes.
(ldc): Update to 1.27.1.
[make-flags]: New argument.
[configure-flags]: Adjust.
[phases]{fix-compiler-rt-library-discovery}: New phase.
{patch-paths-in-tests}: Likewise.
{disable-problematic-tests}: Likewise.  Compared to before, many GDB tests are
reinstated.
{set-cc-and-cxx-to-use-clang}: New phase.
{tests}: Override.
[inputs]: Update clang to version 11. Bootstrap from a stage 1 version of
itself.
* gnu/packages/patches/ldc-bootstrap-disable-tests.patch: Delete file.
* gnu/packages/patches/ldc-disable-phobos-tests.patch: Likewise.
* gnu/local.mk: De-register them.
2021-11-11 12:18:25 -05:00
Maxim Cournoyer 2fc08ccde4
gnu: gdb: Update to 11.1 and remove gdb-9.2.
* gnu/packages/gdb.scm (gdb-10): Rename to...
(gdb-11): ... and update.  Update comment about disabled tests.
[origin]: Delete patch, integrated  upstream.
(gdb-9.2): Delete variable, no longer used.
(gdb): Set alias to gdb-11.
* gnu/packages/patches/gdb-hurd.patch: Delete file.
* gnu/packages/patches/gdb-9.2-sim-ppc-fno-common.patch: Likewise.
* gnu/local.mk (dist_patch_DATA): De-register them.
2021-11-11 12:18:24 -05:00
Maxim Cournoyer a248421cbd
gnu: curl: Update to 7.79.1.
* gnu/packages/curl.scm (curl): Update to 7.79.1.  Delete trailing #t.
[origin]: Remove the upstream curl-7.77-tls-priority-string.patch patch.
* gnu/packages/patches/curl-7.77-tls-priority-string.patch: Delete it.
* gnu/local.mk (dist_patch_DATA): De-register it.
2021-11-11 12:18:22 -05:00
Maxim Cournoyer 802307fe6f
gnu: meson: Patch to allow installing to independent prefixes.
Meson goes to lengths at preventing installation to directories outside of the
main installation prefix.  This isn't convenient or desirable in Guix; patch
it out using a patch maintained by Nix.

* gnu/packages/patches/meson-allow-dirs-outside-of-prefix.patch: Add patch.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/build-tools.scm (meson): Use it.
2021-11-11 12:18:12 -05:00
Maxim Cournoyer 33133a6ed3
gnu: rust: Bootstrap rust from 1.39.0 and optimize build time.
Only stage 1 (rather than stage 2) rustc and cargo are built and the
installation phase rewritten to not invoke the build tool, which helps to
shorten the build time to about 10 minutes per Rust on a fast machine.  The
total build time should take less than 4h30, down from the current 8 hours on
a Ryzen 3900X CPU.

* gnu/packages/patches/rust-reproducible-builds.patch: Delete file.
* gnu/packages/patches/rustc-1.39.0-src.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it, and un-register
rust-reproducible-builds.patch.
* gnu/packages/rust.scm (%mrustc-commit): New variable.
(%mrustc-source): Update to latest commit.
(rust-1.29): Morph into...
(rust-1.39): ... this.
[source]: Adjust the snippet, patches and patch-flags fields.
[inputs]: Replace llvm-7 by llvm (9).
[make-flags]: Add the RUSTC_VERSION, MRUSTC_TARGET_VER and OUTDIR_SUF make
variables.  Remove the RUSTCSRC make variable.
[phases]{copy-mrustc-and-patch}: Rename to...
{setup-mrustc-sources}: ... this.  A symbolic link is created inside the
mrustc directory, pointing to the Rust 1.39.0 sources.
{patch-makefiles}: Adjust directory.  Patch date and git definitions.  Edit
out the RUSTC_SRC_DL prerequisite.  Adjust the patching of a shebang.
{patch-cargo-checksums}: Adjust.
{configure-cargo-home}: New phase.
{configure}: Create and add a 'cc' shim to PATH.
{build}: Do not invoke make in parallel mode inside the run_rustc directory.
(rust-1.30): Morph into...
(rust-1.40): ... this, integrating the changes introduced between 1.30 and
1.40.
[modules]: Properly import (guix build cargo-utils).
[phases]{add-cc-shim-to-path}: New phase.
{configure}: Increase the codegen-units value to 256.
{build}: Only build stage 1 rustc and cargo, and group the commands into one
invocation.
{install}: Manually install the stage 1 build artifacts.
{patch-cargo-checksums}: Remove the ad-hoc use-modules, no longer needed.
[source]: Adjust.
[arguments]: Set validate-runpath? to #f.
[phases]{patch-cargo-checksums}: Remove phase.
{configure}: Repatriate the jemalloc configuration changes from 1.40.
[native-inputs]: Replace the rust-1.29 inputs by rust-1.39.  Use regular
jemalloc and llvm versions.
(rust-1.41)[phases]: Add the patch-cargo-checksums phase.
(rust-1.31, rust-1.32, rust-1.33, rust-1.34, rust-1.35, rust-1.36, rust-1.37)
(rust-1.38, rust-1.39, rust-1.40):  Delete variables.
(rust-1.46)[phases]{install}: Group build, test and install commands.
(rust-1.47)[phases]{build}: Override to adjust for the relocation of the
standard library source directory.
2021-11-11 12:18:10 -05:00
Thiago Jung Bauermann b04a20f77f
gnu: gcc-5: Fix powerpc64le-linux build
GCC 5 has a misaligned access to a vector pointer which causes a build failure
when using GCC 8 and later.  Backport upstream fix that was applied on the GCC
6 branch.

* gnu/packages/gcc.scm (gcc-5)[source]: Apply
gcc-5-fix-powerpc64le-build.patch.
* gnu/packages/patches/gcc-5-fix-powerpc64le-build.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2021-11-11 10:31:31 -05:00
Thiago Jung Bauermann 57fd6d511c
gnu: diffutils: Update to 3.8.
‘coreutils-gnulib-tests.patch’ is applied in the gnulib version shipped
with 3.8.

* gnu/packages/base.scm (diffutils): Update to 3.8.
[source]: Do not apply coreutils-gnulib-tests.patch.

Modified-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2021-11-11 10:31:30 -05:00
Thiago Jung Bauermann f234f5b0e1
gnu: diffutils: Fix signal processing.
diffutils has a race condition in its signal processing code which is easy to
trigger on powerpc64le-linux.  More often than not, it causes the ‘colors’
test to fail and therefore the build of the package fails as well.

Add the patch proposed in Debian bug 922552 which fixes the problem.

* gnu/packages/patches/diffutils-fix-signal-processing.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/base.scm (diffutils)[source]: Use it.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2021-11-11 10:31:30 -05:00
Thiago Jung Bauermann 4b4e35a771
gnu: gtk+-2: Fix ‘builder’ test.
The signal callbacks in the ‘builder’ testcase have wrong prototypes.
This causes it to fail the “/Builder/Signal Autoconnect” test on
powerpc64le-linux.

Solve the problem by backporting the upstream fix that was applied to
GTK+ 3.0.

* gnu/packages/patches/gtk2-fix-builder-test.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/gtk.scm (gtk+-2): Use it.

Signed-off-by: Maxim Cournoyer <maxim.cournoyer@gmail.com>
2021-11-11 10:31:30 -05:00
Maxim Cournoyer 0268db5671
gnu: gst-libav: Update to 1.18.5.
* gnu/packages/gstreamer.scm (gst-libav): Update to 1.18.5.
[source]: Remove patch, now integrated upstream.
* gnu/packages/patches/gst-libav-64channels-stack-corruption.patch: Delete file.
* gnu/local.mk: De-register it.
2021-11-11 10:31:27 -05:00
Maxim Cournoyer 5ce79ae740
gnu: gst-plugins-ugly: Update to 1.18.5.
* gnu/packages/gstreamer.scm (gst-plugins-ugly): Update to 1.18.5.
[source]: Remove patches.
* gnu/packages/patches/gst-plugins-ugly-fix-out-of-bound-reads.patch: Delete file.
* gnu/local.mk: De-register it.
2021-11-11 10:31:27 -05:00
Maxim Cournoyer 1b858b122a
gnu: gst-plugins-bad: Update to 1.18.5.
* gnu/packages/gstreamer.scm (gst-plugins-bad): Update to 1.18.5.
[source]: Remove patches.
Delete trailing #t.
* gnu/packages/patches/gst-plugins-bad-fix-overflow.patch: Delete file.
* gnu/local.mk: De-register it.
2021-11-11 10:31:27 -05:00
Maxim Cournoyer 7ea92af545
gnu: gst-plugins-good: Update to 1.18.5.
* gnu/packages/gstreamer.scm (gst-plugins-good): Update to 1.18.5.
[source]: Remove the CVE patches, included in the release.
* gnu/packages/patches/gst-plugins-good-CVE-2021-3497.patch: Delete file.
* gnu/packages/patches/gst-plugins-good-CVE-2021-3498.patch: Likewise.
* gnu/local.mk: De-register them.
2021-11-11 10:31:27 -05:00
Maxim Cournoyer a87cfa250d
gnu: gst-plugins-base: Update to 1.18.5.
* gnu/packages/gstreamer.scm (gst-plugins-base): Update to 1.18.5.
[source]: Remove patches.
[inputs]: Move wayland...
[propagated-inputs]: here.
* gnu/packages/patches/gst-plugins-base-fix-id3v2-invalid-read.patch: Delete
file.
* gnu/local.mk: De-register it.
2021-11-11 10:31:26 -05:00
Maxim Cournoyer d8a0fc90b5
Revert gstreamer update to 1.19.2.
This reverts commits from e49190cf2b to
b2fe4c44e3.

Reason: 1.19 is an unstable (development) release rather than a stable one.
2021-11-11 10:31:26 -05:00
Maxim Cournoyer e151f94467
gnu: polkit: Update to 0.120 and ungraft.
* gnu/packages/polkit.scm (polkit): Update to 0.120.
[origin]: Update URL and remove libsystemd-login substitution.  Remove
replacement.
[inputs]: Update mozjs-60 to mozjs-78.
[native-inputs]: Add libxslt and docbook-xsl for manpage generation.
[phases]{fix-manpage-generation}: New phase.
(polkit/fixed): Delete package.
* gnu/packages/patches/polkit-CVE-2021-3560.patch: Delete file.
* gnu/local.mk: De-register it.

Co-authored-by: Morgan Smith <Morgan.J.Smith@outlook.com>
2021-11-11 10:31:26 -05:00
Maxim Cournoyer d102bd7316
gnu: abseil-cpp: Remove googletest patch.
* gnu/packages/patches/abseil-cpp-fix-gtest.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): De-register it.
* gnu/packages/cpp.scm (abseil-cpp)[source]: Remove patch.

Co-authored-by: Greg Hogan <code@greghogan.com>
2021-11-11 10:31:25 -05:00
Maxim Cournoyer 8ee17f03a5
gnu: lib2geom: Update to 1.1.
* gnu/packages/graphics.scm (lib2geom): Update to 1.1.
[source]: Remove patches, modules and snippet fields.
[phases]: Remove trailing #t.
* gnu/packages/patches/lib2geom-fix-tests.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): De-register it.
2021-11-11 10:31:24 -05:00
Maxim Cournoyer 5be7ae7bf3
gnu: gst-libav: Update to 1.19.2.
* gnu/packages/gstreamer.scm (gst-libav): Update to 1.19.2.
[source]: Re-indent origin.  Delete patches field.
[meson]: Use meson-0.55.
* gnu/packages/patches/gst-libav-64channels-stack-corruption.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): De-register it.
2021-11-11 10:31:23 -05:00
Maxim Cournoyer b59ad1e176
gnu: gst-plugins-ugly: Update to 1.19.2.
* gnu/packages/gstreamer.scm (gst-plugins-ugly): Update to 1.19.2.  Delete
trailing #t.
[patches]: Delete field.
[meson]: Use meson-0.55.
* gnu/packages/patches/gst-plugins-ugly-fix-out-of-bound-reads.patch: Delete
file.
* gnu/local.mk (dist_patch_DATA): De-register it.
2021-11-11 10:31:23 -05:00
Maxim Cournoyer 543367ae89
gnu: gst-plugins-bad: Update to 1.19.2.
* gnu/packages/gstreamer.scm (gst-plugins-bad): Update to 1.19.2.
* gnu/packages/patches/gst-plugins-bad-fix-overflow.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): De-register it.
2021-11-11 10:31:23 -05:00
Maxim Cournoyer a9e83d7c7e
gnu: gst-plugins-good: Update to 1.19.2.
* gnu/packages/gstreamer.scm (gst-plugins-good): Update to 1.19.2.  Remove
trailing #t.
[patches]: Remove.
[meson]: Use meson-0.55.
* gnu/packages/patches/gst-plugins-good-CVE-2021-3497.patch: Delete file.
* gnu/packages/patches/gst-plugins-good-CVE-2021-3498.patch: Likewise.
* gnu/packages/patches/gst-plugins-good-fix-test.patch: Likewise.
* gnu/local.mk: De-register them.
2021-11-11 10:31:23 -05:00
Maxim Cournoyer 8f22b547ef
gnu: gst-plugins-base: Update to 1.19.2.
* gnu/packages/gstreamer.scm (gst-plugins-base): Update to 1.19.2
[origin]: Delete patches field.  Remove trailing #t.
[meson]: Use meson-0.55.
* gnu/packages/patches/gst-plugins-base-fix-id3v2-invalid-read.patch: Delete.
* gnu/local.mk (dist_patch_DATA): De-register.
2021-11-11 10:31:22 -05:00
Raghav Gururajan 7e3caf0077
gnu: farstream: Enable tests.
This patch depends on gstreamer's update to 1.18.4.

* gnu/packages/patches/farstream-gupnp.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/freedesktop.scm (farstream)[patches]: Use it.
[arguments](tests?): Remove argument.
[phases](disable-timeout-tests): New phase.
2021-11-11 10:31:20 -05:00
Vincent Legoll f1240adb9f
gnu: json-c: Update to 0.15.
* gnu/packages/web.scm (json-c): Update to 0.15.
[source]: Remove obsolete patch 'json-c-CVE-2020-12762.patch'.
* gnu/packages/patches/json-c-CVE-2020-12762.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.

Signed-off-by: Leo Famulari <leo@famulari.name>
2021-11-11 10:31:15 -05:00
Efraim Flashner 1c94392a13
Merge remote-tracking branch 'origin/master' into core-updates-frozen 2021-11-08 09:06:14 +02:00
Efraim Flashner dd87bbb2b7
gnu: python-poppler-qt5: Fix building.
* gnu/packages/pdf.scm (python-poppler-qt5)[source]: Add patch.
* gnu/packages/patches/python-poppler-qt5-fix-build.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
2021-11-06 23:32:54 +02:00
Marius Bakke 1525443e02
gnu: ceph: Update to 16.2.6.
* gnu/packages/storage.scm (ceph): Update to 16.2.6.
[source](patches): Add two new patches.  Remove one obsolete.
[source](snippet): Unbundle fmt.
[arguments]: Remove -DWITH_PYTHON3 from #:configure-flags. Add
-DWITH_SYSTEMD.  Adjust RUNPATH substitution, and the wrap-python-scripts
phase, for upstream changes.  Remove trailing #t's.
[inputs]: Remove PYTHON-SIX and PYTHON-WRAPPER.  Add FMT, ICU4C,
PYTHON-PYYAML, PYTHON, and SQLITE.
* gnu/packages/patches/ceph-fix-snappy-breaking-change.patch: Delete file.
* gnu/packages/patches/ceph-boost-compat.patch,
gnu/packages/patches/ceph-rocksdb-compat.patch: New files.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
2021-11-06 17:41:41 +01:00
Tobias Geerinckx-Rice 5c1ad6b924
gnu: libblockdev: Update to 2.26.
* gnu/packages/disk.scm (libblockdev): Update to 2.26.
[source]: Remove patch.
* gnu/packages/patches/libblockdev-glib-compat.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2021-11-03 18:44:06 +01:00
Efraim Flashner 075df3d3e2
Merge remote-tracking branch 'origin/master' into core-updates-frozen 2021-11-03 14:27:51 +02:00
Tobias Geerinckx-Rice 0489e488de
gnu: inkscape@1.1: Update to 1.1.1.
* gnu/packages/inkscape.scm (inkscape-1.1): Update to 1.1.1.
[source]: Remove patch.  Don't explicitly return #t from snippet.
[arguments]: Don't explicitly return #t from phases.
* gnu/packages/patches/inkscape-1.1-fix-build-witch-gcc7.5.patch:
Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2021-11-03 11:19:57 +01:00
Jelle Licht 87e57cbecb
gnu: emacs-exwm: Remove obsolete patch.
* gnu/packages/patches/emacs-exwm-fix-fullscreen-states.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/emacs-xyz.scm (emacs-exwm)[source]: Remove patch.
2021-11-02 20:56:36 +01:00
Efraim Flashner bc5155b952
Merge remote-tracking branch 'origin/master' into core-updates-frozen 2021-10-31 14:49:47 +02:00
Liliana Marie Prikler 9f2c5e901e
gnu: Add zig.
* gnu/packages/patches/zig-disable-libc-note-test.patch,
gnu/packages/patches/zig-use-system-paths.patch: New files.
* gnu/packages/zig.scm: New file.
* gnu/local.mk (GNU_SYSTEM_MODULES, dist_patch_DATA): Adjust accordingly.
2021-10-31 09:02:01 +01:00
Timotej Lazar 142344b6ef
gnu: qemu: Add Guix support to QEMU guest agent.
QEMU guest agent hardcodes paths to /sbin/hwclock and /sbin/shutdown. Patch
the source to try binaries under /run/current-system/profile/sbin first.

* gnu/packages/patches/qemu-fix-agent-paths.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register the patch.
* gnu/packages/virtualization.scm (qemu)[origin]: Apply it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-10-30 19:16:23 +02:00
Efraim Flashner c1ca85323d
gnu: mupdf: Update to 1.19.0.
* gnu/packages/pdf.scm (mupdf): Update to 1.19.0.
[source]: Remove patches. Add directory to be saved in snippet
* gnu/packages/patches/mupdf-CVE-2021-3407.patch,
gnu/packages/patches/mupdf-fix-linkage.patch: Remove files.
* gnu/local.mk (dist_patch_DATA): Remove them.
2021-10-28 13:02:28 +03:00
Mark H Weaver b7a0935420
gnu: icecat: Update to 91.2.0-guix0-preview1.
* gnu/packages/gnuzilla.scm (mozilla-compare-locales)
(all-mozilla-locales, %icecat-version, %icecat-build-id): Update.
(icecat-source): Update upstream source hash.  Update to latest gnuzilla
commit.  Remove the hack that provided 'rename' as 'prename'; set RENAME_CMD
environment variable instead.  Add python to PATH.  Set PYTHONPATH
appropriately.  Adapt substitutions for the reorganized 'makeicecat' script.
Run 'makeicecat' outside of the IceCat source directory.
(icecat)[inputs]: Add cairo, font-dejavu, libpng-apng, libvpx, pciutils,
hunspell, libnotify, sqlite, and zlib.  Update icu4c to version 69.
[native-inputs]: Update rust and cargo to 1.51.  Update rust-cbindgen to 0.19.
Update llvm and clang to 11.  Add m4.  Remove autoconf.
[description]: Update embedded version number to 91.
[arguments]: Remove "#:out-of-source? #t".  Add "#:validate-runpath? #f".  In
configure-flags, add "--enable-application=browser", "--enable-rust-simd",
"--enable-release", "--enable-optimize", "--enable-strip",
"--disable-elf-hack", "--with-system-png", and "--with-system-zlib".  Adjust
the set of modules.  Remove the 'link-libxul-with-libraries' and 'bootstrap'
phases.  Remove the sandbox whitelist population code from the
'fix-ffmpeg-runtime-linker' phase.  Add a new 'build-sandbox-whitelist' phase.
The new whitelist code now adds <font-dejavu>/share/fonts to the whitelist,
and also the runpaths of all libraries in the 'mesa' package.  Update the
'configure' phase to use clang-11 and llvm-11 for compilation (previously we
used gcc), to create a 'mozconfig' file and run './mach configure' (previously
we passed flags to './configure').  Update the 'build' and 'install' phases to
use './mach'.  Update and simplify the 'neutralise-store-references' phase.
Move the 'install-desktop-entry' phase to happen after 'wrap-program', whereas
previously it was run after 'configure'.  In the 'wrap-program' phase, add
libpng-apng and libnotify to LD_LIBRARY_PATH.
(mozilla-78-compare-locales, all-mozilla-78-locales, %icecat-78-version)
(icecat-78-source): New variables, containing the previous values of
mozilla-compare-locales, all-mozilla-locales, %icecat-version, and
icecat-source, respectively.
(icedove)[source]: Use 'icecat-78-source'.
* gnu/packages/patches/icecat-makeicecat.patch: Adapt to the reorganized
'makeicecat' script.
* gnu/packages/patches/icecat-78-makeicecat.patch: New file,
containing previous contents of icecat-makeicecat.patch.
* gnu/local.mk: Add icecat-78-makeicecat.patch.
2021-10-27 18:33:34 -04:00
Vagrant Cascadian af4ce7bd41
gnu: diffoscope: Update to 188.
* gnu/packages/patches/diffoscope-fix-test_item3_deflate_llvm_bitcode.patch:
  Rename patch to...
* gnu/packages/patches/diffoscope-fix-llvm-test.patch: This.
* gnu/local.mk (dist_patch_DATA): Update patch name.
* gnu/packages/diffoscope.scm (diffoscope): Update to 188.
  [source]: Update patch name.
  [arguments]: Add skip-python-tests phase.
  Add fpc-external-tool phase.
  Add use-dumppdf-py phase.
  [native-inputs]: Add fpc.
2021-10-27 08:58:42 -07:00
John Kehayias 9c4244cc73
gnu: flatpak: Add patch to fix paths.
* gnu/packages/package-management.scm (flatpak)[source]: Add patch.
* gnu/packages/patches/flatpak-fix-path.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-10-25 21:01:21 +02:00
Ludovic Courtès b87fe805aa
gnu: python-peachpy: Make output deterministic.
Fixes <https://issues.guix.gnu.org/50672>.

This makes users of python-peachpy bit-reproducible, such as nnpack.

* gnu/packages/patches/python-peachpy-determinism.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/python-xyz.scm (python-peachpy)[source]: Use it.

Co-authored-by: Kyle Meyer <kyle@kyleam.com>
2021-10-25 14:32:59 +02:00
Vagrant Cascadian 65be27dcfd
gnu: u-boot: Update to 2021.10.
* gnu/packages/bootloaders.scm (%u-boot-allow-disabling-openssl-patch): New variable.
  (u-boot): Update to 2021.10.
  Add patch fixing build without openssl.
  (u-boot-qemu-riscv64-smode):
  Add patch fixing build without openssl.
  (u-boot-tools): Adjust phases to disable CONFIG_TOOLS_LIBCRYPTO.
  (make-u-boot-package): Add phase disabling CONFIG_TOOLS_LIBCRYPTO.
* gnu/packages/patches/u-boot-allow-disabling-openssl.patch: New patch.
* gnu/local.mk (dist_patch_DATA): Add patch.
2021-10-24 13:51:37 -07:00
Timothy Sample ab8c08c519
gnu: disarchive: Update to 0.3.0.
* gnu/packages/backup.scm (disarchive): Update to 0.3.0.
[source]: Remove cross-compilation patch.
[arguments]: Remove field.
* gnu/packages/patches/disarchive-cross-compilation.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2021-10-24 14:56:30 -04:00
Mathieu Othacehe e486b2b674
Merge remote-tracking branch 'signed/master' into core-updates 2021-10-18 14:37:26 +00:00
Artem Chernyak 878744c5e3
gnu: udiskie: Update to 2.3.3.
* gnu/packages/patches/udiskie-no-appindicator.patch: Remove file.
* gnu/local.mk: Remove it.
* gnu/packages/freedesktop.scm (udiskie): Update to 2.3.3.
  [source]: Remove udiskie-no-appindicator patch.
  [inputs]: Add libindicator.

Signed-off-by: Guillaume Le Vaillant <glv@posteo.net>
2021-10-18 16:35:38 +02:00
Vinicius Monego 8c55fdf80a
gnu: Add mixxx.
* gnu/packages/music.scm (mixxx): New variable.
* gnu/packages/patches/mixxx-link-qtscriptbytearray-qtscript.patch,
gnu/packages/patches/mixxx-system-googletest-benchmark.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.

Signed-off-by: Leo Famulari <leo@famulari.name>
2021-10-16 17:32:25 -04:00
Greg Hogan ef0c65969b
gnu: aws-sdk-cpp: Update to 1.9.92.
* gnu/packages/patches/aws-sdk-cpp-cmake-prefix.patch,
gnu/packages/patches/aws-sdk-cpp-disable-networking-tests.patch,
gnu/packages/patches/aws-sdk-cpp-disable-werror.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/cpp.scm (aws-sdk-cpp): Update to 1.9.92.
[source]: Use patches.
[inputs, propagated-inputs]: Update AWS dependencies to Common Runtime.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-10-16 00:01:59 +02:00
Greg Hogan 5ed42eb9a0
gnu: Add aws-crt-cpp.
* gnu/packages/cpp.scm (aws-crt-cpp): New variable.
* gnu/packages/patches/aws-crt-cpp-cmake-prefix.patch,
gnu/packages/patches/aws-crt-cpp-disable-networking-tests.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-10-16 00:01:59 +02:00
Greg Hogan 2a0fcc31f7
gnu: Add aws-c-mqtt.
* gnu/packages/c.scm (aws-c-mqtt): New variable.
* gnu/packages/patches/aws-c-mqtt-cmake-prefix.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-10-16 00:01:59 +02:00
Greg Hogan b3c1c37d74
gnu: Add aws-c-s3.
* gnu/packages/c.scm (aws-c-s3): New variable.
* gnu/packages/patches/aws-c-s3-cmake-prefix.patch,
gnu/packages/patches/aws-c-s3-disable-networking-tests.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-10-16 00:01:58 +02:00
Greg Hogan 1f1bb634c3
gnu: Add aws-c-auth.
* gnu/packages/c.scm (aws-c-auth): New variable.
* gnu/packages/patches/aws-c-auth-cmake-prefix.patch,
gnu/packages/patches/aws-c-auth-disable-networking-tests.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-10-16 00:01:58 +02:00
Greg Hogan 2069238cb3
gnu: Add aws-c-compression.
* gnu/packages/c.scm (aws-c-compression): New variable.
* gnu/packages/patches/aws-c-compression-cmake-prefix.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-10-16 00:01:58 +02:00
Greg Hogan d9b8cfd6c6
gnu: Add aws-c-http.
* gnu/packages/c.scm (aws-c-http): New variable.
* gnu/packages/patches/aws-c-http-cmake-prefix.patch,
gnu/packages/patches/aws-c-http-disable-networking-tests.patch: New files.
* gnu/local.mk (dist_patch_DATA): Add them.

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-10-16 00:01:58 +02:00
Greg Hogan 64aaf61762
gnu: aws-c-io: Update to 0.10.5.
* gnu/packages/c.scm (aws-c-io): Update to 0.10.5.
* gnu/packages/patches/aws-c-io-disable-networking-tests.patch: Update.
* gnu/local.mk: Fix formatting.

aws-c-io 0.10.5

Signed-off-by: Ludovic Courtès <ludo@gnu.org>
2021-10-16 00:01:58 +02:00
Tobias Geerinckx-Rice dfa2e5b44b
gnu: alpine: Update to 2.25.
* gnu/packages/mail.scm (alpine): Update to 2.25.
[source]: Add patch.  Don't explicitly return #t from snippet.
[arguments]: Nor from phases.
* gnu/packages/patches/alpine-fix-privacy-policy-crash.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
2021-10-15 17:30:57 +02:00
Guillaume Le Vaillant 2f0986b0f7
gnu: libhx: Update to 4.1.
* gnu/packages/patches/libhx-fix-double-free-bug.patch: Remove file.
* gnu/local.mk (dist_patch_DATA): Remove it.
* gnu/packages/c.scm (libhx): Update to 4.1.
  [source]: Remove patch.
2021-10-15 11:16:58 +02:00
Marius Bakke 0f77e50139
Merge branch 'master' into core-updates-frozen 2021-10-14 00:01:12 +02:00
Marius Bakke 711ee48f81
gnu: ganeti: Prepare for Sphinx 4.0.
* gnu/packages/patches/ganeti-sphinx-compat.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/virtualization.scm (ganeti)[source](patches): Add it.
2021-10-13 23:37:46 +02:00
Guillaume Le Vaillant c1ea1a94c3
gnu: libhx: Fix runtime bug.
There is a bug in libhx causing pam-mount to crash when trying to mount user
directories at login. Upstream has a patch to fix this issue.

* gnu/packages/patches/libhx-fix-double-free-bug.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/c.scm (libhx)[source]: Use it.
2021-10-13 14:15:14 +02:00
Tobias Geerinckx-Rice 848581ae9b
gnu: cpufrequtils: Update to 008.
* gnu/packages/linux.scm (cpufrequtils): Update to 008.
[source]: Remove patch.
[arguments]: Add many #:configure-flags to mitigate downgrade from
Autotools.  Don't ./configure.
[native-inputs]: Remove unused sysfsutils-1.  Add gettext-minimal.
[home-page]: Change to a working mirror.
* gnu/packages/patches/cpufrequtils-fix-aclocal.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Remove it.
2021-10-13 01:20:19 +02:00
Marius Bakke 702bc2b899
gnu: QEMU: Remove obsolete patch.
* gnu/packages/virtualization.scm (qemu)[source](patches): Remove Sphinx
compatibility patch, which worked around a bug in Sphinx that has since been
fixed.
* gnu/packages/patches/qemu-sphinx-compat.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
2021-10-12 21:49:44 +02:00
Marius Bakke 0b5e128750
gnu: QEMU: Update to 6.1.0.
* gnu/packages/virtualization.scm (qemu): Update to 6.1.0.
[source](patches): Remove obsolete patch.
[arguments]: Adjust substitutions for upstream changes.
[native-inputs]: Add PYTHON-SPHINX-RTD-THEME.
* gnu/packages/patches/qemu-meson-compat.patch: Delete file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
2021-10-12 21:49:44 +02:00
Mathieu Othacehe a1eca979fb
Merge remote-tracking branch 'origin/master' into core-updates-frozen. 2021-10-12 17:46:23 +00:00
Marius Bakke 0105f33a4d
gnu: ganeti: Adjust to GHC 8.10 / Stackage 18.10.
* gnu/packages/patches/ganeti-haskell-compat.patch: New file.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
* gnu/packages/virtualization.scm (ganeti)[source](patches): Add it.
[arguments]: Add phase patch-version-constraints.
2021-10-11 21:53:31 +02:00
Marius Bakke 93f69b02a2
gnu: ganeti: Update to 3.0.1.
* gnu/packages/virtualization.scm (ganeti): Update to 3.0.1.
[source](patches): Remove obsolete.
* gnu/tests/ganeti.scm (%ganeti-os): Adjust network configuration so QEMU port
forwarding can work.
(run-ganeti-test): Remove unused port mapping.  Adjust and enable previously
failing test.
* gnu/packages/patches/ganeti-deterministic-manual.patch,
gnu/packages/patches/ganeti-drbd-compat.patch,
gnu/packages/patches/ganeti-os-disk-size.patch: Delete files.
* gnu/local.mk (dist_patch_DATA): Adjust accordingly.
2021-10-11 18:59:44 +02:00
Mathieu Othacehe d5073fd113
gnu: Add platform support.
* gnu/platform.scm: New file.
* gnu/platforms/arm.scm: Ditto.
* gnu/platforms/hurd.scm: Ditto.
* gnu/local.mk (GNU_SYSTEM_MODULES): Add them.

Signed-off-by: Mathieu Othacehe <othacehe@gnu.org>
2021-10-11 12:05:39 +00:00
Oleg Pykhalov fee0bced7f
home: services: configuration: Support file-like objects.
* gnu/home/services/configuration.scm (interpose): Operate only with file-like
objects.
(string-or-gexp?): Delete procedure.
(serialize-string-or-gexp): Rename to 'serialize-file-like'.
(text-config?): Call 'file-like' intead of 'string-or-gexp?'.
* guix/scripts/home/import.scm:
(generate-bash-module+configuration): Don't call slurp-file-gexp.
* gnu/home/services/configuration.scm: Move content ...
* gnu/services/configuration.scm: here.
* gnu/home/services/shells.scm: Delete (gnu home services configuration).
* gnu/home/services/xdg.scm: Same.
* gnu/local.mk: Same.
* tests/guix-home.sh:
Test home-bash-service-type and extension with home-bash-extension.
2021-10-09 19:24:19 +03:00
Oleg Pykhalov 0e8d2df0f1
Move (gnu home-services) to (gnu home services).
* gnu/home-services.scm (%guix-home-root-directory): Replace
gnu/home-services.scm with "gnu/home/services.scm".
Rename to gnu/home/services.scm.
* gnu/local.mk
(GNU_SYSTEM_MODULES): Rename gnu/home-services.scm to gnu/home/services.scm.
* doc/he-config-bare-bones.scm:
Replace (gnu home-services) with (gnu home services).
* gnu/home.scm: Same.
* gnu/home/services/fontutils.scm: Same.
* gnu/home/services/mcron.scm: Same.
* gnu/home/services/shells.scm: Same.
* gnu/home/services/shepherd.scm: Same.
* gnu/home/services/symlink-manager.scm: Same.
* gnu/home/services/xdg.scm: Same.
* guix/scripts/home.scm: Same.
* guix/self.scm: Same.
2021-10-09 19:24:18 +03:00
Ludovic Courtès b37fe44b7d
gnu: clang@11, clang@12: Do not refer to /lib on foreign distros.
Partly fixes <https://issues.guix.gnu.org/51088>.

* gnu/packages/patches/clang-11.0-libc-search-path.patch: Update.
* gnu/packages/patches/clang-12.0-libc-search-path.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/llvm.scm (clang-12): Use it.
2021-10-09 01:02:19 +02:00
Ludovic Courtès 66caab54b9
gnu: clang@7, clang@8: Do not refer to /lib on foreign distros.
Partly fixes <https://issues.guix.gnu.org/51088>.

* gnu/packages/patches/clang-7.0-libc-search-path.patch: Update.
* gnu/packages/patches/clang-8.0-libc-search-path.patch: New file.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/llvm.scm (clang-8): Use it.
2021-10-09 01:02:18 +02:00
Oleg Pykhalov ba8ddb3480
gnu: Move (gnu home-services) to (gnu home services).
* gnu/home-services/configuration.scm: Move the content ...
* gnu/home/services/configuration.scm: ... here.
* doc/guix.texi:
Replace (gnu home-services mcron) with (gnu home services mcron).
Replace (gnu home-services) with (gnu home services).
* gnu/home.scm:
Replace (gnu home-services fontutils) with (gnu services fontutils).
Replace (gnu home-services shells) with (gnu home services shells).
Replace (gnu home-services symlink-manager) with
(gnu home services symlink-manager).
Replace (gnu home-services xdg) with (gnu home services xdg).
* gnu/home-services/fontutils.scm: Rename to gnu/services/fontutils.scm.
* gnu/home-services/mcron.scm: Move to gnu/home/services/mcron.scm.
Replace (gnu home-services shepherd) with (gnu home services shepherd).
* gnu/home-services.scm (%service-type-path):
Search home services in "gnu/services".
* gnu/home-services/shells.scm: Replace (gnu home-services configuration) with
(gnu home services configuration).
Rename to gnu/home/services/shells.scm.
Replace (gnu home-services utils) with (gnu home services utils).
* gnu/home-services/shepherd.scm: Move to gnu/home/services/shepherd.scm.
* gnu/home-services/symlink-manager.scm:
Rename to gnu/home/services/symlink-manager.scm.
* gnu/home-services/utils.scm: Rename to gnu/home/services/utils.scm.
* gnu/home-services/xdg.scm: Rename to gnu/home/services/xdg.scm.
* guix/scripts/home/import.scm:
Replace (gnu home-services bash) with (gnu home services bash).
* gnu/home-services.scm: Update documentation string.
* doc/he-config-bare-bones.scm:
Apply new (gnu home-services ...) modules location.
* gnu/local.mk (GNU_SYSTEM_MODULES): Same.
2021-10-08 15:36:18 +03:00
Lars-Dominik Braun c8a7ba621b
gnu: pigx-scrnaseq: Remove dependency on pandoc-citeproc.
* gnu/packages/patches/pigx-scrnaseq-no-citeproc.patch: Add patch.
* gnu/local.mk: Register it.
* gnu/packages/bioinformatics.scm (pigx-scrnaseq)[source]: Use it.
[native-inputs]: Add automake/autoconf.
2021-10-08 09:13:55 +02:00
Lars-Dominik Braun 26488f63b8
gnu: pigx-rnaseq: Remove dependency on pandoc-citeproc.
* gnu/packages/patches/pigx-rnaseq-no-citeproc.patch: Add patch.
* gnu/local.mk: Register it.
* gnu/packages/bioinformatics.scm (pigx-rnaseq)[source]: Use it.
[native-inputs]: Add automake/autoconf.
2021-10-08 09:13:55 +02:00
Lars-Dominik Braun 07f2e4993b
gnu: pigx-chipseq: Remove dependency on pandoc-citeproc.
* gnu/packages/patches/pigx-chipseq-no-citeproc.patch: Add patch.
* gnu/local.mk: Register it.
* gnu/packages/bioinformatics.scm (pigx-chipseq)[source]: Use it.
[native-inputs]: Add automake/autoconf.
2021-10-08 09:13:54 +02:00
Lars-Dominik Braun e51a3f4a72
gnu: pigx-sars-cov2-ww: Remove dependency on pandoc-citeproc.
* gnu/packages/patches/pigx-sars-cov2-ww-no-citeproc.patch: Add patch.
* gnu/local.mk: Register it.
* gnu/packages/bioinformatics.scm (pigx-sars-cov2-ww)[source]: Use it.
[native-inputs]: Add automake/autoconf.
2021-10-08 09:13:54 +02:00
Lars-Dominik Braun fb1ffc53ba
gnu: pigx-bsseq: Remove dependency on pandoc-citeproc.
* gnu/packages/patches/pigx-bsseq-no-citeproc.patch: Add patch.
* gnu/local.mk: Register it.
* gnu/packages/bioinformatics.scm (pigx-bsseq)[source]: Use it.
[native-inputs]: Add automake/autoconf.
2021-10-08 09:13:54 +02:00
Lars-Dominik Braun 7eb9fe4e53
gnu: ngless: Fix build.
Apply upstream patch to restore compatibility with current Stackage.

* gnu/packages/patches/ngless-unliftio.patch: New file.
* gnu/local.mk (dist_patch_DATA): Register it.
* gnu/packages/bioinformatics.scm (ngless): Use it.
2021-10-08 09:13:53 +02:00
Xinglu Chen ed044023d7
gnu: idris: Fix build.
Backport some commits from upstream.

* gnu/packages/patches/idris-build-with-haskeline-0.8.patch:
* gnu/packages/patches/idris-build-with-megaparsec-9.patch: New patches
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/idris.scm (idris): Use them.

Signed-off-by: Lars-Dominik Braun <lars@6xq.net>
2021-10-08 09:13:53 +02:00
Lars-Dominik Braun 2a1b6c0dbf
gnu: hedgewars: Fix build.
* gnu/packages/patches/hedgewars-network-bsd.patch: Import upstream patch.
* gnu/local.mk (dist_patch_DATA): Add it.
* gnu/packages/games.scm (hedgewars): Use it.
2021-10-08 09:13:53 +02:00
Lars-Dominik Braun a389190855
gnu: cabal-install: Build with GHC 8.10.
* gnu/packages/patches/cabal-install-base16-bytestring1.0.patch: New patch.
* gnu/packages/patches/cabal-install-ghc8.10.patch: Ditto.
* gnu/local.mk (dist_patch_DATA): Add them.
* gnu/packages/haskell-apps.scm (cabal-install) [source]: Use them.
2021-10-08 09:13:53 +02:00
Lars-Dominik Braun b97f549b14
gnu: Update Haskell ecosystem.
Bump packages’ versions to the lastest Stackage or Hackage
release. Since packages are interdependent, do so in a single commit.

525 packages have been updated.

These packages have been removed, because they fail to build, have no
newer version available and no dependencies:

corrode
ghc-easytest
ghc-edisonapi
ghc-edisoncore
ghc-pandoc-types
ghc-regex-tdfa-text

These have been removed, because they are no longer required:

ghc-happy-1.19.9
ghc-prettyprinter-1.6
ghc-protolude-0.3

ghc-pandoc-citeproc and pandoc-citeproc have been removed, because pandoc
does not use them any more.

Co-authored-by: Xinglu Chen <public@yoctocell.xyz>
2021-10-08 09:13:52 +02:00
Julien Lepiller a3d528fa24
gnu: ocaml-cairo2: Update to 0.6.2.
* gnu/packages/ocaml.scm (ocaml-cairo2): Update to 0.6.2.
* gnu/packages/patches/ocaml-cairo2-caml_ba_array-fix.patch: Remove
file.
* gnu/local.scm (dist_patch_DATA): Remove it.
2021-10-08 04:34:07 +02:00