2001-03-24 22:40:17 +01:00
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# $FreeBSD$
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#
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2001-09-21 07:59:19 +02:00
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2004-04-02 09:29:48 +02:00
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COMMENT = Scientific ports
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2008-05-24 08:51:36 +02:00
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SUBDIR += 2d-rewriter
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2006-09-07 03:24:33 +02:00
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SUBDIR += InsightToolkit
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2011-03-07 11:57:09 +01:00
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SUBDIR += R-cran-AMORE
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2011-09-18 04:47:50 +02:00
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SUBDIR += R-cran-DCluster
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2011-09-17 08:55:27 +02:00
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SUBDIR += R-cran-Epi
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bayesm covers many important models used in marketing and micro-econometrics
applications. The package includes: Bayes Regression (univariate or
multivariate dep var), Bayes Seemingly Unrelated Regression (SUR), Binary and
Ordinal Probit, Multinomial Logit (MNL) and Multinomial Probit (MNP),
Multivariate Probit, Negative Binomial (Poisson) Regression, Multivariate
Mixtures of Normals (including clustering), Dirichlet Process Prior Density
Estimation with normal base, Hierarchical Linear Models with normal prior and
covariates, Hierarchical Linear Models with a mixture of normals prior and
covariates, Hierarchical Multinomial Logits with a mixture of normals prior
and covariates, Hierarchical Multinomial Logits with a Dirichlet Process
prior and covariates, Hierarchical Negative Binomial Regression Models,
Bayesian analysis of choice-based conjoint data, Bayesian treatment of linear
instrumental variables models, and Analysis of Multivariate Ordinal survey
data with scale usage heterogeneity (as in Rossi et al, JASA (01)).
WWW: http://www.perossi.org/home/bsm-1
2011-03-07 13:04:35 +01:00
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SUBDIR += R-cran-bayesm
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2015-11-08 06:46:50 +01:00
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SUBDIR += R-cran-cmprsk
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2012-02-11 03:26:29 +01:00
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SUBDIR += R-cran-e1071
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2011-09-28 09:33:03 +02:00
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SUBDIR += R-cran-eco
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2011-12-15 02:20:35 +01:00
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SUBDIR += R-cran-epicalc
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2015-11-08 07:15:14 +01:00
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SUBDIR += R-cran-etm
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- Add a new port: science/R-cran-snow
The snow package provides support for simple parallel computing on a
network of workstations using R. A master R process calls makeCluster
to start a cluster of worker processes; the master process then uses
functions such as clusterCall and clusterApply to execute R code on
the worker processes and collect and return the results on the master.
This framework supports many forms of "embarrassingly parallel"
computations.
Snow can use one of four communications mechanisms: sockets, PVM, MPI,
or NetWorkSpaces (NWS). NWS support was provided by Steve Weston.
PVM clusters use the rpvm package; MPI clusters use package Rmpi; NWS
clusters use package nws. If pvm is used, then pvm must be started,
either using a pvm console (e.g the pvm text console or the graphical
xpvm console, both available with pvm) or from R using functions
provided by rpvm. Similarly, LAM-MPI must be started, e.g. using
lamboot, for MPI clusters that use Rmpi and LAM-MPI. If NWS is used,
the NetWorkSpaces server must be running. SOCK clusters are the
easiest approach for using snow on a single multi-core computer as
they require no additional software.
WWW: http://cran.r-project.org/web/packages/snow/
2012-01-31 14:14:19 +01:00
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SUBDIR += R-cran-snow
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2012-04-19 14:43:14 +02:00
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SUBDIR += R-cran-som
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2006-01-25 18:34:35 +01:00
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SUBDIR += afni
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2009-05-23 00:16:46 +02:00
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SUBDIR += avogadro
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2010-05-12 15:25:37 +02:00
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SUBDIR += bddsolve
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Code_Saturne is EDF's general purpose computational fluid dynamics
software. Developed since 1997 at EDF R&D, it is based on a co-located
Finite Volume approach that accepts meshes with any type of
cell (tetrahedral, hexahedral, prismatic, pyramidal, polyhedral, ...)
and any type of grid structure (unstructured, blockstructured, hybrid,
conforming or with hanging nodes, ...).
Its basic capabilities enable the handling of either incompressible or
expandable flows with or without heat transfer and turbulence (mixing
length, 2-equation models, v2f, Reynolds stress models, Large Eddy
Simulations, ...).
<http://rd.edf.com/code_saturne/>
2007-06-17 23:04:54 +02:00
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SUBDIR += bft
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2007-05-25 00:16:03 +02:00
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SUBDIR += bodr
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2009-03-16 07:07:37 +01:00
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SUBDIR += brian
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2005-01-22 16:01:02 +01:00
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SUBDIR += buddy
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2004-02-27 23:35:23 +01:00
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SUBDIR += cdcl
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2006-01-28 21:40:56 +01:00
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SUBDIR += cdf
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CDO is a collection of command line Operators to manipulate and analyse Climate
model Data. Supported file formats are GRIB, netCDF, SERVICE, EXTRA and IEG.
There are more than 250 operators available. The following table gives a short
overview about the main categories.
* File information (info, sinfo, diff, ...)
* File operations (copy, cat, merge, split*, ...)
* Selection (selcode, selvar, sellevel, seltimestep, ...)
* Missing values (setctomiss, setmisstoc, setrtomiss)
* Arithmetic (add, sub, mul, div, ...)
* Mathematical functions (sqrt, exp, log, sin, cos, ...)
* Comparision (eq, ne, le, lt, ge, gt, ...)
* Conditions (ifthen, ifnotthen, ifthenc, ifnotthenc)
* Field statistic (fldsum, fldavg, fldstd, fldmin, fldmax, ...)
* Vertical statistic (vertsum, vertavg, vertstd, vertmin, ...)
* Time range statistic (timavg, yearavg, monavg, dayavg, ...)
* Ensemble statistic (enssum, ensavg, ensstd, ensmin, ...)
* Regression (detrend)
* Field interpolation (remapbil, remapcon, remapdis, ...)
* Vertical interpolation (ml2pl, ml2hl)
* Time interpolation (inttime, intyear)
WWW: http://www.mpimet.mpg.de/fileadmin/software/cdo/
PR: ports/98099
Submitted by: Sunpoet Po-Chuan Hsieh <sunpoet@sunpoet.net>
2006-06-11 10:41:34 +02:00
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SUBDIR += cdo
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2007-04-01 11:00:23 +02:00
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SUBDIR += cgnslib
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2014-04-29 15:28:31 +02:00
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SUBDIR += cgribex
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Checkmol is a command-line utility program which reads molecular
structure files in different formats and analyzes the input
molecule for the presence of various functional groups and structural
elements. At present, approx. 200 different functional groups are
recognized. This output can be easily placed into a database table,
permitting the creation of chemical databases with a functional group
search option. Checkmol also outputs a set of statistical values derived
from a given molecule, which can also be used for quick retrieval from a
database. These values include: the number of atoms, bonds, and rings,
the number of differently hybridized carbon, oxgen, and nitrogen atoms,
the number of C=O double bonds, the number of rings of different sizes,
the number of rings containing nitrogen, oxygen, sulfur, the number of
aromatic rings, the number of heterocyclic rings, etc. The combination
of all of these values for a given molecule represents some kind of
"fingerprint" which is useful for rapid pre-selection in a database
structure/substructure search prior to a full atom-by-atom match.
WWW: http://merian.pch.univie.ac.at/~nhaider/cheminf/cmmm.html
PR: ports/138670
Feature safe:yes
Submitted by: Fernan Aguero <fernan at iib.unsam.edu.ar>
2009-09-19 11:53:55 +02:00
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SUBDIR += checkmol
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2007-05-25 00:18:10 +02:00
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SUBDIR += chemical-mime-data
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2001-03-30 21:23:00 +02:00
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SUBDIR += chemtool
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2003-10-04 04:30:06 +02:00
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SUBDIR += chemtool-devel
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2001-05-08 02:03:05 +02:00
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SUBDIR += clhep
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2008-05-01 23:04:57 +02:00
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SUBDIR += colt
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2006-07-28 05:38:04 +02:00
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SUBDIR += crf++
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2005-02-24 21:26:31 +01:00
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SUBDIR += dcl
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2005-01-21 20:03:52 +01:00
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SUBDIR += devisor
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2012-04-17 19:35:33 +02:00
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SUBDIR += dlpoly-classic
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Code_Saturne is EDF's general purpose computational fluid dynamics
software. Developed since 1997 at EDF R&D, it is based on a co-located
Finite Volume approach that accepts meshes with any type of
cell (tetrahedral, hexahedral, prismatic, pyramidal, polyhedral, ...)
and any type of grid structure (unstructured, blockstructured, hybrid,
conforming or with hanging nodes, ...).
Its basic capabilities enable the handling of either incompressible or
expandable flows with or without heat transfer and turbulence (mixing
length, 2-equation models, v2f, Reynolds stress models, Large Eddy
Simulations, ...).
<http://rd.edf.com/code_saturne/>
2007-06-17 23:04:54 +02:00
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SUBDIR += ecs
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2010-09-08 05:09:31 +02:00
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SUBDIR += epte
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2006-03-15 11:36:29 +01:00
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SUBDIR += fastcap
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2006-03-15 11:38:00 +01:00
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SUBDIR += fasthenry
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2013-10-08 21:31:32 +02:00
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SUBDIR += fisicalab
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2013-02-20 18:30:45 +01:00
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SUBDIR += fvcom
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SUBDIR += fvcom-mpi
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Code_Saturne is EDF's general purpose computational fluid dynamics
software. Developed since 1997 at EDF R&D, it is based on a co-located
Finite Volume approach that accepts meshes with any type of
cell (tetrahedral, hexahedral, prismatic, pyramidal, polyhedral, ...)
and any type of grid structure (unstructured, blockstructured, hybrid,
conforming or with hanging nodes, ...).
Its basic capabilities enable the handling of either incompressible or
expandable flows with or without heat transfer and turbulence (mixing
length, 2-equation models, v2f, Reynolds stress models, Large Eddy
Simulations, ...).
<http://rd.edf.com/code_saturne/>
2007-06-17 23:04:54 +02:00
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SUBDIR += fvm
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2003-04-08 02:04:57 +02:00
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SUBDIR += gchemutils
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2004-11-15 23:18:09 +01:00
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SUBDIR += getdp
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2003-05-04 04:33:52 +02:00
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SUBDIR += ghemical
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2006-07-28 05:36:25 +02:00
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SUBDIR += ghmm
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2005-10-31 19:48:23 +01:00
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SUBDIR += gnudatalanguage
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2004-02-01 04:09:52 +01:00
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SUBDIR += gramps
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2014-08-29 19:31:42 +02:00
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SUBDIR += grib_api
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2004-10-19 03:36:11 +02:00
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SUBDIR += gromacs
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2006-03-19 21:51:14 +01:00
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SUBDIR += gsmc
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2006-09-27 21:59:46 +02:00
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SUBDIR += gtamsanalyzer
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Gwyddion is a modular SPM (Scanning Probe Microsopy) data visualization and
analysis tool written with Gtk+.
It can be used for all most frequently used data processing operations
including: leveling, false color plotting, shading, filtering, denoising, data
editing, integral transforms, grain analysis, profile extraction, fractal
analysis, and many more. The program is primarily focused on SPM data analysis
(e.g. data obtained from AFM, STM, NSOM, and similar microscopes). However, it
can also be used for analysis of SEM (Scanning Electron Microscopy) data or any
other 2D data.
WWW: http://gwyddion.net/
PR: ports/101773
Submitted by: David Necas <yeti@gwyddion.net>
2006-08-13 00:34:57 +02:00
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SUBDIR += gwyddion
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2011-03-18 20:42:35 +01:00
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SUBDIR += h5utils
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2010-01-02 03:54:00 +01:00
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SUBDIR += harminv
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2004-02-25 23:55:01 +01:00
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SUBDIR += hdf
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SUBDIR += hdf5
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2010-01-03 06:02:13 +01:00
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SUBDIR += hs-bio
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2004-12-29 21:46:47 +01:00
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SUBDIR += isaac-cfd
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2010-06-29 03:22:16 +02:00
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SUBDIR += jstrack
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2011-10-17 02:03:42 +02:00
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SUBDIR += kalzium
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2010-08-23 20:15:03 +02:00
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SUBDIR += kst2
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2005-05-15 23:44:02 +02:00
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SUBDIR += lamprop
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2003-04-04 09:28:22 +02:00
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SUBDIR += libctl
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2006-07-03 09:30:45 +02:00
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SUBDIR += libghemical
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2006-12-29 08:41:44 +01:00
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SUBDIR += libint
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2009-10-07 13:10:21 +02:00
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SUBDIR += libkml
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2007-07-28 09:10:54 +02:00
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SUBDIR += liblinear
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2008-08-21 00:35:40 +02:00
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SUBDIR += liboglappth
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2009-08-14 22:02:07 +02:00
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SUBDIR += libquantum
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2001-12-19 04:44:59 +01:00
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SUBDIR += libsvm
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2004-12-11 05:52:40 +01:00
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SUBDIR += libsvm-python
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2015-10-26 11:10:10 +01:00
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SUBDIR += libxc
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2006-12-22 04:38:47 +01:00
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SUBDIR += linsmith
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2010-05-20 11:43:14 +02:00
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SUBDIR += massxpert
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2005-05-22 17:50:06 +02:00
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SUBDIR += mbdyn
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2015-01-05 10:15:55 +01:00
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SUBDIR += mcstas
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2015-01-05 10:38:16 +01:00
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SUBDIR += mcstas-comps
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2006-09-25 01:09:26 +02:00
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SUBDIR += medit
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2010-01-25 01:27:10 +01:00
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SUBDIR += meep
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2012-07-07 17:15:08 +02:00
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SUBDIR += mei
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2014-06-30 07:44:47 +02:00
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SUBDIR += metaf2xml
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2006-04-30 14:05:08 +02:00
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SUBDIR += minc2
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2009-09-19 13:02:46 +02:00
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SUBDIR += mol2ps
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2015-01-04 14:55:52 +01:00
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SUBDIR += mpb
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2001-09-12 18:36:24 +02:00
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SUBDIR += mpqc
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2002-07-16 08:53:52 +02:00
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SUBDIR += mpqc-mpich
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Code_Saturne is EDF's general purpose computational fluid dynamics
software. Developed since 1997 at EDF R&D, it is based on a co-located
Finite Volume approach that accepts meshes with any type of
cell (tetrahedral, hexahedral, prismatic, pyramidal, polyhedral, ...)
and any type of grid structure (unstructured, blockstructured, hybrid,
conforming or with hanging nodes, ...).
Its basic capabilities enable the handling of either incompressible or
expandable flows with or without heat transfer and turbulence (mixing
length, 2-equation models, v2f, Reynolds stress models, Large Eddy
Simulations, ...).
<http://rd.edf.com/code_saturne/>
2007-06-17 23:04:54 +02:00
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SUBDIR += ncs
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2006-01-30 23:19:24 +01:00
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SUBDIR += netcdf
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2014-05-03 05:18:06 +02:00
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SUBDIR += netcdf-cxx
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2014-05-03 05:20:47 +02:00
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SUBDIR += netcdf-fortran
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2007-04-28 12:58:01 +02:00
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SUBDIR += nifticlib
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2003-01-05 18:04:59 +01:00
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SUBDIR += openbabel
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2014-02-21 16:39:56 +01:00
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SUBDIR += openkim
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2015-06-04 16:07:31 +02:00
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SUBDIR += orthanc
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2015-10-06 17:54:48 +02:00
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SUBDIR += orthanc-dicomweb
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2015-07-28 16:48:32 +02:00
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SUBDIR += orthanc-postgresql
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2015-07-28 16:45:55 +02:00
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SUBDIR += orthanc-webviewer
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2006-08-03 09:29:03 +02:00
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SUBDIR += p5-Algorithm-SVMLight
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2010-04-02 17:33:52 +02:00
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SUBDIR += p5-Chemistry-3DBuilder
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2010-04-02 17:24:14 +02:00
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SUBDIR += p5-Chemistry-Bond-Find
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2010-04-02 17:25:12 +02:00
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SUBDIR += p5-Chemistry-Canonicalize
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2002-02-08 07:15:14 +01:00
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SUBDIR += p5-Chemistry-Elements
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2010-04-02 17:32:52 +02:00
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SUBDIR += p5-Chemistry-File-MDLMol
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2010-04-02 17:32:24 +02:00
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SUBDIR += p5-Chemistry-File-Mopac
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2009-05-17 14:51:49 +02:00
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SUBDIR += p5-Chemistry-File-PDB
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2010-04-02 17:33:24 +02:00
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SUBDIR += p5-Chemistry-File-SLN
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2010-04-02 17:34:39 +02:00
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SUBDIR += p5-Chemistry-File-SMARTS
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2010-04-02 17:35:47 +02:00
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SUBDIR += p5-Chemistry-File-SMILES
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2010-04-02 17:28:04 +02:00
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SUBDIR += p5-Chemistry-File-VRML
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2010-04-02 17:28:42 +02:00
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SUBDIR += p5-Chemistry-File-XYZ
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2010-04-02 17:31:34 +02:00
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SUBDIR += p5-Chemistry-FormulaPattern
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2010-04-02 17:35:23 +02:00
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SUBDIR += p5-Chemistry-InternalCoords
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2010-04-02 17:26:37 +02:00
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SUBDIR += p5-Chemistry-Isotope
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2009-05-17 15:00:50 +02:00
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SUBDIR += p5-Chemistry-MacroMol
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2010-04-02 17:29:58 +02:00
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SUBDIR += p5-Chemistry-MidasPattern
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2010-04-02 17:29:35 +02:00
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SUBDIR += p5-Chemistry-Mok
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2009-05-17 01:29:15 +02:00
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SUBDIR += p5-Chemistry-Mol
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2010-04-02 17:25:56 +02:00
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SUBDIR += p5-Chemistry-Pattern
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2010-04-02 17:32:03 +02:00
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SUBDIR += p5-Chemistry-Reaction
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2010-04-02 17:27:22 +02:00
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SUBDIR += p5-Chemistry-Ring
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2011-03-10 07:15:55 +01:00
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SUBDIR += p5-Geo-BUFR
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2010-12-29 09:50:40 +01:00
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SUBDIR += p5-Geo-Coordinates-Converter
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2011-06-12 18:18:59 +02:00
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SUBDIR += p5-Geo-Coordinates-Converter-iArea
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2009-03-22 16:18:46 +01:00
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SUBDIR += p5-Geo-ReadGRIB
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2010-01-15 08:20:43 +01:00
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SUBDIR += p5-Geo-WebService-Elevation-USGS
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2015-11-21 00:34:39 +01:00
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SUBDIR += p5-Mcstas-Tools
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2010-04-02 17:36:26 +02:00
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SUBDIR += p5-PerlMol
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2010-09-09 02:26:13 +02:00
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SUBDIR += p5-Physics-Unit
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2006-09-28 21:17:57 +02:00
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SUBDIR += paje
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2005-06-14 07:41:20 +02:00
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SUBDIR += paraview
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2007-04-30 15:44:51 +02:00
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SUBDIR += pnetcdf
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2009-02-28 20:58:19 +01:00
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SUBDIR += psychopy
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Add new port: science/pulseview
PR: 179854
Submitted by: uffe (uffe.org)
Major QA: marino
==================================================================
The sigrok project aims at creating a portable, cross-platform,
Free/Libre/Open-Source signal analysis software suite that supports
various device types, such as logic analyzers, MSOs, oscilloscopes,
multimeters, LCR meters, sound level meters, thermometers, hygrometers,
anemometers, light meters, DAQs, dataloggers, function generators,
spectrum analyzers, power supplies, GPIB interfaces, and more.
WWW: http://sigrok.org/
2014-08-01 01:22:41 +02:00
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SUBDIR += pulseview
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2010-01-09 13:19:58 +01:00
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SUBDIR += py-DendroPy
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2014-09-13 17:18:32 +02:00
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SUBDIR += py-cdo
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2013-06-15 21:08:39 +02:00
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SUBDIR += py-coards
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2009-07-13 16:07:16 +02:00
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SUBDIR += py-h5py
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2008-09-27 01:21:54 +02:00
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SUBDIR += py-hcluster
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2008-09-27 20:52:29 +02:00
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SUBDIR += py-mdp
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2009-04-23 19:02:20 +02:00
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SUBDIR += py-mlpy
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2009-02-23 21:18:45 +01:00
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SUBDIR += py-netCDF4
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2013-05-17 15:55:37 +02:00
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SUBDIR += py-obspy
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2005-07-18 18:22:48 +02:00
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SUBDIR += py-paida
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2013-09-02 13:27:42 +02:00
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SUBDIR += py-pupynere
|
2013-12-08 15:12:47 +01:00
|
|
|
SUBDIR += py-pyaixi
|
2009-01-16 01:09:20 +01:00
|
|
|
SUBDIR += py-pydicom
|
2014-09-04 18:24:31 +02:00
|
|
|
SUBDIR += py-pysal
|
2015-11-02 10:24:50 +01:00
|
|
|
SUBDIR += py-pyteomics
|
|
|
|
SUBDIR += py-pyteomics.biolccc
|
2015-12-31 14:41:14 +01:00
|
|
|
SUBDIR += py-scikit-fuzzy
|
2012-10-19 14:24:00 +02:00
|
|
|
SUBDIR += py-scikit-learn
|
2015-06-14 14:39:04 +02:00
|
|
|
SUBDIR += py-scikit-sparse
|
2011-02-20 04:54:04 +01:00
|
|
|
SUBDIR += py-scimath
|
2004-08-26 10:37:09 +02:00
|
|
|
SUBDIR += py-scipy
|
2011-07-01 22:23:41 +02:00
|
|
|
SUBDIR += py-ws2300
|
2009-11-19 14:44:38 +01:00
|
|
|
SUBDIR += pybrain
|
2008-06-03 11:41:36 +02:00
|
|
|
SUBDIR += pycdf
|
2010-05-19 07:31:44 +02:00
|
|
|
SUBDIR += pynn
|
2005-02-10 09:44:55 +01:00
|
|
|
SUBDIR += qcl
|
2010-01-13 20:26:59 +01:00
|
|
|
SUBDIR += qtresistors
|
2011-03-25 13:08:20 +01:00
|
|
|
SUBDIR += rubygem-ai4r
|
2014-09-13 17:18:54 +02:00
|
|
|
SUBDIR += rubygem-cdo
|
2015-03-09 17:58:12 +01:00
|
|
|
SUBDIR += rubygem-ruby-dcl
|
2015-05-24 17:35:51 +02:00
|
|
|
SUBDIR += rubygem-ruby-netcdf
|
The sigrok project aims at creating a portable, cross-platform,
Free/Libre/Open-Source signal analysis software suite that supports
various device types, such as logic analyzers, MSOs, oscilloscopes,
multimeters, LCR meters, sound level meters, thermometers,
hygrometers, anemometers, light meters, DAQs, dataloggers,
function generators, spectrum analyzers, power supplies,
GPIB interfaces, and more.
sigrok-cli is a command-line tool written in C, which uses both libsigrok
and libsigrokdecode to provide the basic sigrok functionality from the
command-line. Among other things, it's useful for scripting purposes.
WWW: http://sigrok.org/
PR: ports/179855
Submitted by: Uffe Jakobsen <uffe@uffe.org>
2014-01-03 01:13:11 +01:00
|
|
|
SUBDIR += sigrok-cli
|
Add new port: science/sigrok-firmware
PR: 188810
Submitted by: uffe
===============================================================
The sigrok project aims at creating a portable, cross-platform,
Free/Libre/Open-Source signal analysis software suite that supports
various device types, such as logic analyzers, MSOs, oscilloscopes,
multimeters, LCR meters, sound level meters, thermometers, hygrometers,
anemometers, light meters, DAQs, dataloggers, function generators,
spectrum analyzers, power supplies, GPIB interfaces, and more.
2014-08-04 00:37:51 +02:00
|
|
|
SUBDIR += sigrok-firmware
|
Add new port: science/sigrok-firmware-fx2lafw
PR: 188809
Submitted by: uffer
===============================================================
The sigrok project aims at creating a portable, cross-platform,
Free/Libre/Open-Source signal analysis software suite that supports
various device types, such as logic analyzers, MSOs, oscilloscopes,
multimeters, LCR meters, sound level meters, thermometers, hygrometers,
anemometers, light meters, DAQs, dataloggers, function generators,
spectrum analyzers, power supplies, GPIB interfaces, and more.
2014-08-04 00:24:50 +02:00
|
|
|
SUBDIR += sigrok-firmware-fx2lafw
|
Add new port: science/sigrok-firmware-utils
PR: 188808
Submitted by: uffer
===============================================================
The sigrok project aims at creating a portable, cross-platform,
Free/Libre/Open-Source signal analysis software suite that supports
various device types, such as logic analyzers, MSOs, oscilloscopes,
multimeters, LCR meters, sound level meters, thermometers, hygrometers,
anemometers, light meters, DAQs, dataloggers, function generators,
spectrum analyzers, power supplies, GPIB interfaces, and more.
2014-08-04 00:09:07 +02:00
|
|
|
SUBDIR += sigrok-firmware-utils
|
- New port silo-4.6.1
A mesh and field I/O library and scientific database
Silo is a library for reading and writing a wide variety of scientific
data to binary, disk files. The files Silo produces and the data within
them can be easily shared and exchanged between wholly independently
developed applications running on disparate computing platforms.
Consequently, Silo facilitates the development of general purpose tools
for processing scientific data. One of the more popular tools that process
Silo data files is the VisIt visualization tool.
Silo supports gridless (point) meshes, structured meshes, unstructured-zoo
and unstructured-arbitrary-polyhedral meshes, block structured AMR meshes,
constructive solid geometry (CSG) meshes, piecewise-constant (e.g.
zone-centered) and piecewise-linear (e.g. node-centered) variables defined
on the node, edge, face or volume elements of meshes as well as the
decomposition of meshes into arbitrary subset hierarchies including
materials and mixing materials. In addition, Silo supports a wide variety
of other useful objects to address various scientific computing
application needs.Although the Silo library is a serial library, it has
some key features which enable it to be applied quite effectively and
scalably in parallel.
PR: ports/125725
Submitted by: Pedro F. Giffuni <giffunip at tutopia.com>
2008-07-20 23:19:13 +02:00
|
|
|
SUBDIR += silo
|
2004-11-27 22:38:03 +01:00
|
|
|
SUBDIR += simlib
|
2014-07-03 23:02:10 +02:00
|
|
|
SUBDIR += simsmith
|
2011-10-17 02:03:42 +02:00
|
|
|
SUBDIR += step
|
2006-08-01 17:07:54 +02:00
|
|
|
SUBDIR += svmlight
|
2005-03-17 20:30:00 +01:00
|
|
|
SUBDIR += szip
|
2005-01-14 22:52:08 +01:00
|
|
|
SUBDIR += udunits
|
2005-12-10 22:45:28 +01:00
|
|
|
SUBDIR += v_sim
|
2011-01-06 03:39:32 +01:00
|
|
|
SUBDIR += veusz
|
2004-08-21 18:34:57 +02:00
|
|
|
SUBDIR += vmd
|
2013-04-17 00:46:18 +02:00
|
|
|
SUBDIR += voro++
|
2013-07-22 20:02:57 +02:00
|
|
|
SUBDIR += xfce4-equake-plugin
|
2001-09-12 18:36:24 +02:00
|
|
|
SUBDIR += xmakemol
|
2001-03-24 22:40:17 +01:00
|
|
|
|
|
|
|
.include <bsd.port.subdir.mk>
|