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ad2vcf
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biology/ad2vcf: Fix typo in DESCR
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2023-06-22 11:26:26 +00:00 |
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arka
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biology: Replace RMD160 checksums with BLAKE2s checksums
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2021-10-26 10:03:36 +00:00 |
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atac-seq
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biology/atac-seq: Update to 1.4
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2024-01-10 16:10:17 +00:00 |
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azara
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Bump all dependent packages of wayland (belatedly)
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2022-08-11 05:08:00 +00:00 |
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balance-tui
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biology/balance-tui: update to 0.1.2
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2023-06-06 19:25:14 +00:00 |
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bcftools
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*: recursive bump for Python 3.11 as new default
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2023-08-14 05:23:45 +00:00 |
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beagle
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biology: Replace RMD160 checksums with BLAKE2s checksums
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2021-10-26 10:03:36 +00:00 |
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bedtools
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biology/bedtools: Update to 2.31.1
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2023-11-08 16:46:44 +00:00 |
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biolibc
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biology/biolibc: Update to 0.2.6
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2023-10-28 20:31:40 +00:00 |
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biolibc-tools
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biolibc-tools: fix installation of manpages for users of a custom PKGMANDIR
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2023-12-21 08:50:24 +00:00 |
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bioperl
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*: recursive bump for perl 5.38
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2023-07-06 09:38:07 +00:00 |
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bodr
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*: recursive bump for icu 74.1
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2023-11-08 13:18:02 +00:00 |
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bowtie2
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biology/bowtie2: Update to 2.5.3
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2024-01-18 23:30:12 +00:00 |
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bwa
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biology/bwa: Add support for aarch64 via devel/simde
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2023-05-18 14:05:15 +00:00 |
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canu
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revbump for boost-libs
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2023-12-29 18:24:34 +00:00 |
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cdhit
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*: recursive bump for perl 5.36
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2022-06-28 11:30:51 +00:00 |
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chemtool
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*: recursive bump for cairo dependency changes
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2023-11-14 14:01:17 +00:00 |
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chip-seq
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biology/chip-seq: Update to 1.2
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2023-12-23 16:35:38 +00:00 |
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clustalw
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biology: Replace RMD160 checksums with BLAKE2s checksums
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2021-10-26 10:03:36 +00:00 |
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coalesce
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biology: Replace RMD160 checksums with BLAKE2s checksums
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2021-10-26 10:03:36 +00:00 |
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coordgenlibs
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revbump for boost-libs
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2023-12-29 18:24:34 +00:00 |
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fasda
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biology/fasda: Update to 0.1.5
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2023-10-28 20:33:41 +00:00 |
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fastDNAml
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biology: Replace RMD160 checksums with BLAKE2s checksums
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2021-10-26 10:03:36 +00:00 |
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fastp
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biology/fastp: Update to 0.22.0
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2023-06-01 13:03:53 +00:00 |
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fastq-trim
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fastq-trim: fix installation when using custom PKGMANDIR
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2023-12-24 10:18:27 +00:00 |
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fastqc
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*: recursive bump for perl 5.36
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2022-06-28 11:30:51 +00:00 |
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fastx-toolkit
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biology/fastx-toolkit: Unbreak build on Darwin
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2023-09-25 18:01:35 +00:00 |
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filter-fastq
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*: recursive bump for Python 3.11 as new default
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2023-08-14 05:23:45 +00:00 |
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fluctuate
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biology: Replace RMD160 checksums with BLAKE2s checksums
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2021-10-26 10:03:36 +00:00 |
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gabedit
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*: recursive bump for cairo dependency changes
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2023-11-14 14:01:17 +00:00 |
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generand
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Change MAINTAINER= to OWNER= on mission-critical packages
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2022-12-28 15:27:15 +00:00 |
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genesplicer
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biology: Replace RMD160 checksums with BLAKE2s checksums
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2021-10-26 10:03:36 +00:00 |
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gffread
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biology/gffread: GFF/GTF format conversions, filtering, etc
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2022-11-06 23:01:17 +00:00 |
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glimmer
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biology: Replace RMD160 checksums with BLAKE2s checksums
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2021-10-26 10:03:36 +00:00 |
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gp
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biology: Replace RMD160 checksums with BLAKE2s checksums
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2021-10-26 10:03:36 +00:00 |
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gromacs
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*: recursive bump for icu 74.1
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2023-11-08 13:18:02 +00:00 |
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hisat2
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*: recursive bump for Python 3.11 as new default
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2023-08-14 05:23:45 +00:00 |
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hmmer
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update homepage and master site
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2023-12-29 00:38:59 +00:00 |
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htslib
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*: recursive bump for icu 74.1
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2023-11-08 13:18:02 +00:00 |
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igv
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Switch USE_JAVA2 from 9 to 11, as actually requires 11
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2023-11-18 15:02:53 +00:00 |
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kallisto
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biology/kallisto: Update to 0.50.1
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2023-11-04 14:35:07 +00:00 |
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libpll
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biology/libpll: only works on Linux
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2024-01-24 17:35:53 +00:00 |
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lucy
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biology: Replace RMD160 checksums with BLAKE2s checksums
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2021-10-26 10:03:36 +00:00 |
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maeparser
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revbump for boost-libs
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2023-12-29 18:24:34 +00:00 |
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microsynteny-tools
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microsynteny-tools: propagate python limitations
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2023-11-06 20:21:32 +00:00 |
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miniasm
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miniasm: Honour LDFLAGS. Hopefully fixes build on platforms where zlib
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2023-07-09 08:31:06 +00:00 |
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minimap2
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*: recursive bump for Python 3.11 as new default
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2023-08-14 05:23:45 +00:00 |
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molsketch
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*: recursive bump for cairo dependency changes
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2023-11-14 14:01:17 +00:00 |
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mopac
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mopac: pkgsrc-users can't be OWNER, make it MAINTAINER
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2023-12-15 13:50:36 +00:00 |
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mpqc
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*: recursive bump for perl 5.36
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2022-06-28 11:30:51 +00:00 |
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mummer
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*: recursive bump for perl 5.36
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2022-06-28 11:30:51 +00:00 |
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ncbi-blast+
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*: recursive bump for icu 74.1
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2023-11-08 13:18:02 +00:00 |
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nut
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biology: Replace RMD160 checksums with BLAKE2s checksums
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2021-10-26 10:03:36 +00:00 |
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openbabel
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revbump for boost-libs
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2023-12-29 18:24:34 +00:00 |
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p5-Bio-ASN1-EntrezGene
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*: recursive bump for perl 5.38
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2023-07-06 09:38:07 +00:00 |
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pdbalign
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biology: Replace RMD160 checksums with BLAKE2s checksums
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2021-10-26 10:03:36 +00:00 |
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peak-classifier
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biology/peak-classifier: Update to 0.1.4.13
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2023-10-28 20:37:17 +00:00 |
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phylip
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biology: Replace RMD160 checksums with BLAKE2s checksums
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2021-10-26 10:03:36 +00:00 |
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plink
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biology/plink: Unbreak build on Darwin
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2023-12-24 16:26:42 +00:00 |
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plinkseq
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revbump for devel/abseil
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2024-01-30 18:29:16 +00:00 |
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primer3
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*: Mark packages that were originally identified as requiring
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2023-08-02 19:20:16 +00:00 |
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profit
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fetch from backup
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2023-12-23 02:13:49 +00:00 |
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puzzle
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biology: Replace RMD160 checksums with BLAKE2s checksums
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2021-10-26 10:03:36 +00:00 |
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py-bcbio-gff
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biology/py-bcbio-gff: Read and write GFF files
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2023-11-05 17:51:31 +00:00 |
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py-biopython
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py-biopython: add missing setuptools tool
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2023-11-15 08:58:06 +00:00 |
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py-cutadapt
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py-cutadapt: add missing tool
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2024-02-18 11:14:08 +00:00 |
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py-dna-features-viewer
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py-dna-features-viewer: Fix PYTHON_VERSIONS_INCOMPATIBLE.
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2023-11-06 20:05:34 +00:00 |
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py-dnaio
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py-dnaio: add missing tool
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2024-02-15 21:45:02 +00:00 |
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py-macs2
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py-macs2: add missing tool dependencies
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2023-12-25 10:21:17 +00:00 |
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py-macs3
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py-macs3: Fix PYTHON_VERSIONS_INCOMPATIBLE.
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2024-01-12 09:51:58 +00:00 |
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py-multiqc
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biology/py-multiqc: PYTHON_VERSIONS_INCOMPATIBLE+=38
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2023-07-23 00:26:31 +00:00 |
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py-pydicom
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py-pydicom: updated to 2.4.4
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2024-01-14 18:29:06 +00:00 |
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R-popbio
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biology: Replace RMD160 checksums with BLAKE2s checksums
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2021-10-26 10:03:36 +00:00 |
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racon
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*: remove pkg-config from tools where no buildlink3.mk file is included
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2022-07-25 11:12:18 +00:00 |
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rasmol
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*: Remove many GCC_REQD for particularly old GCCs
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2023-07-17 22:00:22 +00:00 |
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rna-seq
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*: recursive bump for Python 3.11 as new default
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2023-08-14 05:23:45 +00:00 |
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rna-star
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biology/rna-star: Fix build on Darwin 21.6.0 x86
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2023-08-29 21:49:56 +00:00 |
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samtools
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*: recursive bump for Python 3.11 as new default
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2023-08-14 05:23:45 +00:00 |
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seqtk
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seqtk: Add missing zlib dependency
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2023-07-09 08:41:40 +00:00 |
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sewer
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biology: Replace RMD160 checksums with BLAKE2s checksums
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2021-10-26 10:03:36 +00:00 |
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sra-tools
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sra-tools: add missing Python dependency
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2023-11-24 16:37:29 +00:00 |
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stacks
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*: recursive bump for Python 3.11 as new default
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2023-08-14 05:23:45 +00:00 |
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stride
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biology: Replace RMD160 checksums with BLAKE2s checksums
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2021-10-26 10:03:36 +00:00 |
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stringtie
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biology/stringtie: RNA-Seq assembly and quantification
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2023-08-12 14:58:35 +00:00 |
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trimmomatic
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biology: Replace RMD160 checksums with BLAKE2s checksums
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2021-10-26 10:03:36 +00:00 |
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vcf-split
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biology/vcf-split: Update to 0.1.5.10
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2023-10-28 20:39:31 +00:00 |
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vcf2hap
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biology/vcf2hap: Update to 0.1.6.7
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2023-10-28 20:41:05 +00:00 |
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vsearch
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biology/vsearch: Update to 2.27.0
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2024-01-23 13:26:59 +00:00 |
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xmakemol
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biology/xmakemol: import package from wip.
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2022-12-30 18:17:48 +00:00 |
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xylem
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biology: Replace RMD160 checksums with BLAKE2s checksums
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2021-10-26 10:03:36 +00:00 |
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Makefile
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biology/Makefile: Add py-macs3
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2024-01-10 15:17:50 +00:00 |
